RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 PDE4AP27815 886 aa8.72□□□□□ -1.01
CD44-202ENST00000278385 TMEM121BQ9BXQ6 578 aaPredicted RBP8.7□□□□□ -1.02
CD44-202ENST00000278385 PRKCSHP14314 528 aaPredicted RBP8.69□□□□□ -1.02
CD44-202ENST00000278385 SLAIN1Q8ND83 568 aa8.69□□□□□ -1.02
CD44-202ENST00000278385 TSHZ2Q9NRE2 1034 aa8.67□□□□□ -1.02
CD44-202ENST00000278385 POTEB2H3BUK9 544 aa8.65□□□□□ -1.02
CD44-202ENST00000278385 SNPHO15079 494 aa8.65□□□□□ -1.02
CD44-202ENST00000278385 LARP6Q9BRS8 491 aaKnown RBP8.64□□□□□ -1.03
CD44-202ENST00000278385 VSIG10Q8N0Z9 540 aa8.63□□□□□ -1.03
CD44-202ENST00000278385 GPHNQ9NQX3 736 aaPredicted RBP8.63□□□□□ -1.03
CD44-202ENST00000278385 DDX27Q96GQ7 796 aaKnown RBP8.62□□□□□ -1.03
CD44-202ENST00000278385 C2orf72A6NCS6 295 aa8.61□□□□□ -1.03
CD44-202ENST00000278385 RIMBP2O15034 1052 aa8.61□□□□□ -1.03
CD44-202ENST00000278385 POTEJP0CG39 1038 aa8.59□□□□□ -1.03
CD44-202ENST00000278385 CRISPLD2Q9H0B8 497 aa8.59□□□□□ -1.03
CD44-202ENST00000278385 DOK7Q18PE1 504 aa8.58□□□□□ -1.04
CD44-202ENST00000278385 PPP1R15BQ5SWA1 713 aa8.58□□□□□ -1.04
CD44-202ENST00000278385 ZNF710Q8N1W2 664 aa8.58□□□□□ -1.04
CD44-202ENST00000278385 OTUD5Q96G74 571 aa8.58□□□□□ -1.04
CD44-202ENST00000278385 FOXK1P85037 733 aa8.57□□□□□ -1.04
CD44-202ENST00000278385 CADPS2Q86UW7 1296 aa8.57□□□□□ -1.04
CD44-202ENST00000278385 PLPP6Q8IY26 295 aa8.57□□□□□ -1.04
CD44-202ENST00000278385 BCANQ96GW7 911 aa8.57□□□□□ -1.04
CD44-202ENST00000278385 ARXQ96QS3 562 aa8.57□□□□□ -1.04
CD44-202ENST00000278385 TBC1D12O60347 775 aa8.56□□□□□ -1.04
CD44-202ENST00000278385 ZNF316A6NFI3 1004 aaPredicted RBP8.55□□□□□ -1.04
CD44-202ENST00000278385 P3H3Q8IVL6 736 aa8.55□□□□□ -1.04
CD44-202ENST00000278385 NCKAP5LQ9HCH0 1330 aa8.54□□□□□ -1.04
CD44-202ENST00000278385 DSG2Q14126 1118 aa8.54□□□□□ -1.04
CD44-202ENST00000278385 KIF3CO14782 793 aa8.53□□□□□ -1.04
CD44-202ENST00000278385 MFSD10Q14728 455 aa8.53□□□□□ -1.04
CD44-202ENST00000278385 E2F4Q16254 413 aa8.53□□□□□ -1.04
CD44-202ENST00000278385 TMEM92Q6UXU6 159 aa8.53□□□□□ -1.04
CD44-202ENST00000278385 MAP3K9P80192 1104 aa8.5□□□□□ -1.05
CD44-202ENST00000278385 ZSWIM6Q9HCJ5 1215 aa8.48□□□□□ -1.05
CD44-202ENST00000278385 UPF1Q92900 1129 aaKnown RBP eCLIP8.47□□□□□ -1.05
CD44-202ENST00000278385 SLC34A2O95436 690 aa8.46□□□□□ -1.06
CD44-202ENST00000278385 FAM163AQ96GL9 167 aaPredicted RBP8.46□□□□□ -1.06
CD44-202ENST00000278385 KDM2AQ9Y2K7 1162 aa8.45□□□□□ -1.06
CD44-202ENST00000278385 TIMELESSQ9UNS1 1208 aa8.44□□□□□ -1.06
CD44-202ENST00000278385 CAMK2BQ13554 666 aa8.42□□□□□ -1.06
CD44-202ENST00000278385 PTCD2Q8WV60 388 aaKnown RBP8.42□□□□□ -1.06
CD44-202ENST00000278385 ARHGEF1Q92888 912 aaKnown RBP8.42□□□□□ -1.06
CD44-202ENST00000278385 PCDHGA4Q9Y5G9 962 aa8.42□□□□□ -1.06
CD44-202ENST00000278385 SPDYE16A6NNV3 312 aaPredicted RBP8.41□□□□□ -1.06
CD44-202ENST00000278385 TULP1O00294 542 aaPredicted RBP8.41□□□□□ -1.06
CD44-202ENST00000278385 NBR1Q14596 966 aa8.41□□□□□ -1.06
CD44-202ENST00000278385 ARSIQ5FYB1 569 aa8.4□□□□□ -1.06
CD44-202ENST00000278385 OXER1Q8TDS5 423 aa8.4□□□□□ -1.06
CD44-202ENST00000278385 DPYSL4O14531 572 aa8.39□□□□□ -1.07
CD44-202ENST00000278385 HOXB3P14651 431 aaPredicted RBP8.39□□□□□ -1.07
CD44-202ENST00000278385 TPRNQ4KMQ1 711 aa8.39□□□□□ -1.07
CD44-202ENST00000278385 KCNV2Q8TDN2 545 aa8.38□□□□□ -1.07
CD44-202ENST00000278385 PSDA5PKW4 1024 aaPredicted RBP8.37□□□□□ -1.07
CD44-202ENST00000278385 EVI5O60447 810 aa8.37□□□□□ -1.07
CD44-202ENST00000278385 HOXB1P14653 301 aaPredicted RBP8.37□□□□□ -1.07
CD44-202ENST00000278385 EMILIN3Q9NT22 766 aa8.37□□□□□ -1.07
CD44-202ENST00000278385 ST18O60284 1047 aa8.36□□□□□ -1.07
CD44-202ENST00000278385 NUDT7P0C024 238 aa8.36□□□□□ -1.07
CD44-202ENST00000278385 EMP3P54852 163 aa8.36□□□□□ -1.07
CD44-202ENST00000278385 SMYD5Q6GMV2 418 aa8.36□□□□□ -1.07
CD44-202ENST00000278385 ARIH1Q9Y4X5 557 aaPredicted RBP8.36□□□□□ -1.07
CD44-202ENST00000278385 ERBB3P21860 1342 aa8.35□□□□□ -1.07
CD44-202ENST00000278385 GPR153Q6NV75 609 aa8.35□□□□□ -1.07
CD44-202ENST00000278385 KCNH8Q96L42 1107 aa8.33□□□□□ -1.08
CD44-202ENST00000278385 PDIA6Q15084 440 aa8.31□□□□□ -1.08
CD44-202ENST00000278385 PPP4R3BQ5MIZ7 849 aa8.3□□□□□ -1.08
CD44-202ENST00000278385 KHSRPQ92945 711 aaKnown RBP eCLIP8.3□□□□□ -1.08
CD44-202ENST00000278385 MARVELD3Q96A59 401 aa8.3□□□□□ -1.08
CD44-202ENST00000278385 HOMEZQ8IX15 550 aa8.29□□□□□ -1.08
CD44-202ENST00000278385 FAM205CA6NFA0 338 aa8.28□□□□□ -1.08
CD44-202ENST00000278385 GRXCR2A6NFK2 248 aa8.28□□□□□ -1.08
CD44-202ENST00000278385 ZNF454Q8N9F8 522 aa8.28□□□□□ -1.08
CD44-202ENST00000278385 EPAS1Q99814 870 aa8.28□□□□□ -1.08
CD44-202ENST00000278385 ANO8Q9HCE9 1232 aaPredicted RBP8.28□□□□□ -1.08
CD44-202ENST00000278385 LHX6Q9UPM6 363 aa8.28□□□□□ -1.08
CD44-202ENST00000278385 DDX12PQ92771 950 aa8.27□□□□□ -1.09
CD44-202ENST00000278385 PHF14O94880 888 aa8.26□□□□□ -1.09
CD44-202ENST00000278385 VARS2Q5ST30 1063 aaKnown RBP8.26□□□□□ -1.09
CD44-202ENST00000278385 ERICH6Q7L0X2 663 aa8.26□□□□□ -1.09
CD44-202ENST00000278385 FBXW7Q969H0 707 aa8.26□□□□□ -1.09
CD44-202ENST00000278385 JPH4Q96JJ6 628 aa8.26□□□□□ -1.09
CD44-202ENST00000278385 PTGER2P43116 358 aa8.25□□□□□ -1.09
CD44-202ENST00000278385 TYW1BQ6NUM6 668 aa8.25□□□□□ -1.09
CD44-202ENST00000278385 SEMA3EO15041 775 aa8.24□□□□□ -1.09
CD44-202ENST00000278385 ZDHHC16Q969W1 377 aa8.24□□□□□ -1.09
CD44-202ENST00000278385 GTF3C3Q9Y5Q9 886 aa8.23□□□□□ -1.09
CD44-202ENST00000278385 MAP3K7O43318 606 aa8.22□□□□□ -1.09
CD44-202ENST00000278385 FOSBP53539 338 aa8.22□□□□□ -1.09
CD44-202ENST00000278385 HS3ST6Q96QI5 342 aa8.22□□□□□ -1.09
CD44-202ENST00000278385 POTEMA6NI47 508 aa8.21□□□□□ -1.1
CD44-202ENST00000278385 TESPA1A2RU30 521 aaPredicted RBP8.2□□□□□ -1.1
CD44-202ENST00000278385 PTPREP23469 700 aa8.2□□□□□ -1.1
CD44-202ENST00000278385 PBX2P40425 430 aa8.2□□□□□ -1.1
CD44-202ENST00000278385 POTEGQ6S5H5 508 aa8.2□□□□□ -1.1
CD44-202ENST00000278385 RBM33Q96EV2 1170 aaKnown RBP8.2□□□□□ -1.1
CD44-202ENST00000278385 KDM4FA0A1W2PPD8 638 aa8.19□□□□□ -1.1
CD44-202ENST00000278385 ZNF687Q8N1G0 1237 aa8.19□□□□□ -1.1
CD44-202ENST00000278385 PCDHGA10Q9Y5H3 936 aa8.19□□□□□ -1.1
CD44-202ENST00000278385 NUTM2FA1L443 756 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms