RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 FYCO1Q9BQS8 1478 aa18.86■□□□□ 0.61
C9orf3-201ENST00000277198 TROQ12816 1431 aaPredicted RBP18.85■□□□□ 0.61
C9orf3-201ENST00000277198 RAPGEF3O95398 923 aa18.84■□□□□ 0.61
C9orf3-201ENST00000277198 MIER1Q8N108 512 aa18.83■□□□□ 0.61
C9orf3-201ENST00000277198 ARAP3Q8WWN8 1544 aa18.83■□□□□ 0.6
C9orf3-201ENST00000277198 CDK11AQ9UQ88 783 aaPredicted RBP18.82■□□□□ 0.6
C9orf3-201ENST00000277198 CCDC18Q5T9S5 1454 aa18.82■□□□□ 0.6
C9orf3-201ENST00000277198 NEO1Q92859 1461 aa18.82■□□□□ 0.6
C9orf3-201ENST00000277198 TIAM1Q13009 1591 aa18.81■□□□□ 0.6
C9orf3-201ENST00000277198 FANCAO15360 1455 aa18.81■□□□□ 0.6
C9orf3-201ENST00000277198 FRMPD1Q5SYB0 1578 aa18.79■□□□□ 0.6
C9orf3-201ENST00000277198 KDM4FA0A1W2PPD8 638 aa18.79■□□□□ 0.6
C9orf3-201ENST00000277198 AKNAQ7Z591 1439 aa18.78■□□□□ 0.6
C9orf3-201ENST00000277198 PLCH2O75038 1416 aa18.78■□□□□ 0.6
C9orf3-201ENST00000277198 LRRC9Q6ZRR7 1453 aa18.76■□□□□ 0.59
C9orf3-201ENST00000277198 PHLDB1Q86UU1 1377 aa18.75■□□□□ 0.59
C9orf3-201ENST00000277198 AEBP2Q6ZN18 517 aaPredicted RBP18.74■□□□□ 0.59
C9orf3-201ENST00000277198 MYO5CQ9NQX4 1742 aa18.73■□□□□ 0.59
C9orf3-201ENST00000277198 DENND4BO75064 1496 aaPredicted RBP18.72■□□□□ 0.59
C9orf3-201ENST00000277198 ADGRL1O94910 1474 aa18.71■□□□□ 0.59
C9orf3-201ENST00000277198 ARHGAP5Q13017 1502 aa18.71■□□□□ 0.59
C9orf3-201ENST00000277198 CFAP74Q9C0B2 1584 aa18.7■□□□□ 0.58
C9orf3-201ENST00000277198 SCAPERQ9BY12 1400 aa18.7■□□□□ 0.58
C9orf3-201ENST00000277198 RICTORQ6R327 1708 aa18.7■□□□□ 0.58
C9orf3-201ENST00000277198 EFCAB2Q5VUJ9 269 aa18.68■□□□□ 0.58
C9orf3-201ENST00000277198 RAB3GAP2Q9H2M9 1393 aa18.68■□□□□ 0.58
C9orf3-201ENST00000277198 CDC42BPBQ9Y5S2 1711 aa18.68■□□□□ 0.58
C9orf3-201ENST00000277198 MTUS2Q5JR59 1369 aa18.67■□□□□ 0.58
C9orf3-201ENST00000277198 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.67■□□□□ 0.58
C9orf3-201ENST00000277198 SETD5Q9C0A6 1442 aa18.67■□□□□ 0.58
C9orf3-201ENST00000277198 POGZQ7Z3K3 1410 aa18.66■□□□□ 0.58
C9orf3-201ENST00000277198 YTHDC1Q96MU7 727 aaKnown RBP18.66■□□□□ 0.58
C9orf3-201ENST00000277198 PREX2Q70Z35 1606 aa18.66■□□□□ 0.58
C9orf3-201ENST00000277198 YEATS2Q9ULM3 1422 aa18.65■□□□□ 0.58
C9orf3-201ENST00000277198 CDC42BPAQ5VT25 1732 aa18.65■□□□□ 0.58
C9orf3-201ENST00000277198 GPATCH8Q9UKJ3 1502 aaKnown RBP18.64■□□□□ 0.57
C9orf3-201ENST00000277198 ARHGEF12Q9NZN5 1544 aa18.63■□□□□ 0.57
C9orf3-201ENST00000277198 AFAP1Q8N556 730 aa18.62■□□□□ 0.57
C9orf3-201ENST00000277198 TIMELESSQ9UNS1 1208 aa18.62■□□□□ 0.57
C9orf3-201ENST00000277198 ZMYM4Q5VZL5 1548 aa18.61■□□□□ 0.57
C9orf3-201ENST00000277198 ARHGEF40Q8TER5 1519 aa18.61■□□□□ 0.57
C9orf3-201ENST00000277198 ZNF777Q9ULD5 760 aaPredicted RBP18.61■□□□□ 0.57
C9orf3-201ENST00000277198 EHBP1L1Q8N3D4 1523 aa18.6■□□□□ 0.57
C9orf3-201ENST00000277198 TRAPPC8Q9Y2L5 1435 aa18.59■□□□□ 0.57
C9orf3-201ENST00000277198 ABCC1P33527 1531 aa18.58■□□□□ 0.57
C9orf3-201ENST00000277198 SIGLEC1Q9BZZ2 1709 aa18.58■□□□□ 0.57
C9orf3-201ENST00000277198 ITGAEP38570 1179 aa18.58■□□□□ 0.56
C9orf3-201ENST00000277198 SAMD9LQ8IVG5 1584 aa18.57■□□□□ 0.56
C9orf3-201ENST00000277198 ZFYVE16Q7Z3T8 1539 aa18.57■□□□□ 0.56
C9orf3-201ENST00000277198 ZNF644Q9H582 1327 aaPredicted RBP18.56■□□□□ 0.56
C9orf3-201ENST00000277198 ARID4BQ4LE39 1312 aaPredicted RBP18.55■□□□□ 0.56
C9orf3-201ENST00000277198 ZNF518AQ6AHZ1 1483 aa18.55■□□□□ 0.56
C9orf3-201ENST00000277198 CFDP1Q9UEE9 299 aaPredicted RBP18.55■□□□□ 0.56
C9orf3-201ENST00000277198 NCOA2Q15596 1464 aa18.54■□□□□ 0.56
C9orf3-201ENST00000277198 KDM5CP41229 1560 aa18.54■□□□□ 0.56
C9orf3-201ENST00000277198 SYCP2Q9BX26 1530 aa18.53■□□□□ 0.56
C9orf3-201ENST00000277198 ITSN2Q9NZM3 1697 aa18.53■□□□□ 0.56
C9orf3-201ENST00000277198 HNRNPMP52272 730 aaKnown RBP eCLIP18.53■□□□□ 0.56
C9orf3-201ENST00000277198 MAGI2Q86UL8 1455 aa18.52■□□□□ 0.56
C9orf3-201ENST00000277198 FAM50AQ14320 339 aaKnown RBP18.51■□□□□ 0.55
C9orf3-201ENST00000277198 MYT1LQ9UL68 1186 aa18.5■□□□□ 0.55
C9orf3-201ENST00000277198 SUPT6HQ7KZ85 1726 aaKnown RBP18.49■□□□□ 0.55
C9orf3-201ENST00000277198 HECW2Q9P2P5 1572 aa18.49■□□□□ 0.55
C9orf3-201ENST00000277198 ADAMTSL3P82987 1691 aa18.48■□□□□ 0.55
C9orf3-201ENST00000277198 MLECQ14165 292 aa18.48■□□□□ 0.55
C9orf3-201ENST00000277198 BCORL1Q5H9F3 1711 aa18.48■□□□□ 0.55
C9orf3-201ENST00000277198 ATP10AO60312 1499 aa18.47■□□□□ 0.55
C9orf3-201ENST00000277198 DIP2CQ9Y2E4 1556 aa18.47■□□□□ 0.55
C9orf3-201ENST00000277198 ABCA6Q8N139 1617 aa18.47■□□□□ 0.55
C9orf3-201ENST00000277198 MADDQ8WXG6 1647 aa18.46■□□□□ 0.55
C9orf3-201ENST00000277198 MLH3Q9UHC1 1453 aa18.45■□□□□ 0.54
C9orf3-201ENST00000277198 C9orf84Q5VXU9 1444 aa18.45■□□□□ 0.54
C9orf3-201ENST00000277198 FGD6Q6ZV73 1430 aa18.45■□□□□ 0.54
C9orf3-201ENST00000277198 KIAA1107Q9UPP5 1409 aa18.44■□□□□ 0.54
C9orf3-201ENST00000277198 KIDINS220Q9ULH0 1771 aa18.44■□□□□ 0.54
C9orf3-201ENST00000277198 MBD5Q9P267 1494 aa18.43■□□□□ 0.54
C9orf3-201ENST00000277198 PTPRMP28827 1452 aa18.42■□□□□ 0.54
C9orf3-201ENST00000277198 CAMSAP2Q08AD1 1489 aa18.42■□□□□ 0.54
C9orf3-201ENST00000277198 PLEKHH2Q8IVE3 1493 aa18.42■□□□□ 0.54
C9orf3-201ENST00000277198 SPAG9O60271 1321 aaKnown RBP18.41■□□□□ 0.54
C9orf3-201ENST00000277198 PLPPR3Q6T4P5 718 aa18.4■□□□□ 0.54
C9orf3-201ENST00000277198 HFM1A2PYH4 1435 aa18.39■□□□□ 0.53
C9orf3-201ENST00000277198 RIMS1Q86UR5 1692 aaKnown RBP18.38■□□□□ 0.53
C9orf3-201ENST00000277198 ATP7AQ04656 1500 aa18.38■□□□□ 0.53
C9orf3-201ENST00000277198 INO80Q9ULG1 1556 aaPredicted RBP18.37■□□□□ 0.53
C9orf3-201ENST00000277198 PPP1R15AO75807 674 aaPredicted RBP18.36■□□□□ 0.53
C9orf3-201ENST00000277198 MYOM3Q5VTT5 1437 aa18.36■□□□□ 0.53
C9orf3-201ENST00000277198 SIN3AQ96ST3 1273 aa18.35■□□□□ 0.53
C9orf3-201ENST00000277198 REREQ9P2R6 1566 aa18.34■□□□□ 0.53
C9orf3-201ENST00000277198 CCDC141Q6ZP82 1450 aa18.32■□□□□ 0.52
C9orf3-201ENST00000277198 FER1L4A9Z1Z3 1794 aa18.32■□□□□ 0.52
C9orf3-201ENST00000277198 AGLP35573 1532 aa18.3■□□□□ 0.52
C9orf3-201ENST00000277198 CEBPAP49715 358 aaPredicted RBP18.3■□□□□ 0.52
C9orf3-201ENST00000277198 MYT1Q01538 1121 aa18.3■□□□□ 0.52
C9orf3-201ENST00000277198 A2MP01023 1474 aa18.29■□□□□ 0.52
C9orf3-201ENST00000277198 PLXNC1O60486 1568 aa18.29■□□□□ 0.52
C9orf3-201ENST00000277198 PTPN23Q9H3S7 1636 aa18.29■□□□□ 0.52
C9orf3-201ENST00000277198 MIA2Q96PC5 1412 aa18.28■□□□□ 0.52
C9orf3-201ENST00000277198 ARHGEF5Q12774 1597 aa18.27■□□□□ 0.52
C9orf3-201ENST00000277198 NAIPQ13075 1403 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms