RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 PREX2Q70Z35 1606 aa38.37■■■■□ 3.73
SSBP4-201ENST00000270061 SCAPERQ9BY12 1400 aa38.37■■■■□ 3.73
SSBP4-201ENST00000270061 CDC42BPAQ5VT25 1732 aa38.34■■■■□ 3.73
SSBP4-201ENST00000270061 ZMYM4Q5VZL5 1548 aa38.32■■■■□ 3.72
SSBP4-201ENST00000270061 MTUS2Q5JR59 1369 aa38.31■■■■□ 3.72
SSBP4-201ENST00000270061 POGZQ7Z3K3 1410 aa38.3■■■■□ 3.72
SSBP4-201ENST00000270061 ARHGEF40Q8TER5 1519 aa38.28■■■■□ 3.72
SSBP4-201ENST00000270061 VPS8Q8N3P4 1428 aa38.26■■■■□ 3.72
SSBP4-201ENST00000270061 MAGI2Q86UL8 1455 aa38.22■■■■□ 3.71
SSBP4-201ENST00000270061 EHBP1L1Q8N3D4 1523 aa38.22■■■■□ 3.71
SSBP4-201ENST00000270061 ZFYVE16Q7Z3T8 1539 aa38.21■■■■□ 3.71
SSBP4-201ENST00000270061 ZNF518AQ6AHZ1 1483 aa38.19■■■■□ 3.7
SSBP4-201ENST00000270061 GPATCH8Q9UKJ3 1502 aaKnown RBP38.18■■■■□ 3.7
SSBP4-201ENST00000270061 ABCC1P33527 1531 aa38.16■■■■□ 3.7
SSBP4-201ENST00000270061 YEATS2Q9ULM3 1422 aa38.16■■■■□ 3.7
SSBP4-201ENST00000270061 TIAM1Q13009 1591 aa38.14■■■■□ 3.7
SSBP4-201ENST00000270061 CCNB3Q8WWL7 1395 aa38.14■■■■□ 3.7
SSBP4-201ENST00000270061 ARID4BQ4LE39 1312 aaPredicted RBP38.13■■■■□ 3.69
SSBP4-201ENST00000270061 ITSN2Q9NZM3 1697 aa38.13■■■■□ 3.69
SSBP4-201ENST00000270061 KDM5CP41229 1560 aa38.12■■■■□ 3.69
SSBP4-201ENST00000270061 AFAP1Q8N556 730 aa38.11■■■■□ 3.69
SSBP4-201ENST00000270061 TRIM26Q12899 539 aaPredicted RBP38.09■■■■□ 3.69
SSBP4-201ENST00000270061 ZNF777Q9ULD5 760 aaPredicted RBP38.09■■■■□ 3.69
SSBP4-201ENST00000270061 BCORL1Q5H9F3 1711 aa38.08■■■■□ 3.69
SSBP4-201ENST00000270061 SAMD9LQ8IVG5 1584 aa38.08■■■■□ 3.69
SSBP4-201ENST00000270061 ARHGEF12Q9NZN5 1544 aa38.08■■■■□ 3.69
SSBP4-201ENST00000270061 CFDP1Q9UEE9 299 aaPredicted RBP38.07■■■■□ 3.68
SSBP4-201ENST00000270061 SUPT6HQ7KZ85 1726 aaKnown RBP38.06■■■■□ 3.68
SSBP4-201ENST00000270061 ADAMTSL3P82987 1691 aa38.06■■■■□ 3.68
SSBP4-201ENST00000270061 HECW2Q9P2P5 1572 aa38.05■■■■□ 3.68
SSBP4-201ENST00000270061 TRAPPC8Q9Y2L5 1435 aa38.03■■■■□ 3.68
SSBP4-201ENST00000270061 SIGLEC1Q9BZZ2 1709 aa38.01■■■■□ 3.68
SSBP4-201ENST00000270061 MYT1LQ9UL68 1186 aa38.01■■■■□ 3.68
SSBP4-201ENST00000270061 ATP10AO60312 1499 aa38.01■■■■□ 3.67
SSBP4-201ENST00000270061 SYCP2Q9BX26 1530 aa38■■■■□ 3.67
SSBP4-201ENST00000270061 PCGF6Q9BYE7 350 aa37.99■■■■□ 3.67
SSBP4-201ENST00000270061 MAP3K1Q13233 1512 aa37.98■■■■□ 3.67
SSBP4-201ENST00000270061 NCOA2Q15596 1464 aa37.98■■■■□ 3.67
SSBP4-201ENST00000270061 MLH3Q9UHC1 1453 aa37.98■■■■□ 3.67
SSBP4-201ENST00000270061 LRRC9Q6ZRR7 1453 aa37.97■■■■□ 3.67
SSBP4-201ENST00000270061 PLEKHH2Q8IVE3 1493 aa37.97■■■■□ 3.67
SSBP4-201ENST00000270061 C9orf84Q5VXU9 1444 aa37.96■■■■□ 3.67
SSBP4-201ENST00000270061 KIAA1107Q9UPP5 1409 aa37.94■■■■□ 3.66
SSBP4-201ENST00000270061 MADDQ8WXG6 1647 aa37.94■■■■□ 3.66
SSBP4-201ENST00000270061 HNRNPMP52272 730 aaKnown RBP eCLIP37.92■■■■□ 3.661e-6■■□□□ 12.6
SSBP4-201ENST00000270061 DIP2CQ9Y2E4 1556 aa37.92■■■■□ 3.66
SSBP4-201ENST00000270061 ABCA6Q8N139 1617 aa37.9■■■■□ 3.66
SSBP4-201ENST00000270061 KIDINS220Q9ULH0 1771 aa37.9■■■■□ 3.66
SSBP4-201ENST00000270061 PTPRMP28827 1452 aa37.87■■■■□ 3.65
SSBP4-201ENST00000270061 KANK4Q5T7N3 995 aaPredicted RBP37.85■■■■□ 3.65
SSBP4-201ENST00000270061 ZNF644Q9H582 1327 aaPredicted RBP37.84■■■■□ 3.65
SSBP4-201ENST00000270061 RIMS1Q86UR5 1692 aaKnown RBP37.84■■■■□ 3.65
SSBP4-201ENST00000270061 APLP2Q06481 763 aa37.83■■■■□ 3.65
SSBP4-201ENST00000270061 REREQ9P2R6 1566 aa37.83■■■■□ 3.65
SSBP4-201ENST00000270061 MLECQ14165 292 aa37.83■■■■□ 3.65
SSBP4-201ENST00000270061 PPARGC1BQ86YN6 1023 aaKnown RBP37.82■■■■□ 3.64
SSBP4-201ENST00000270061 SPAG9O60271 1321 aaKnown RBP37.81■■■■□ 3.64
SSBP4-201ENST00000270061 FER1L4A9Z1Z3 1794 aa37.79■■■■□ 3.64
SSBP4-201ENST00000270061 ATP7AQ04656 1500 aa37.76■■■■□ 3.63
SSBP4-201ENST00000270061 MBD5Q9P267 1494 aa37.75■■■■□ 3.63
SSBP4-201ENST00000270061 INO80Q9ULG1 1556 aaPredicted RBP37.74■■■■□ 3.63
SSBP4-201ENST00000270061 CAMSAP2Q08AD1 1489 aa37.74■■■■□ 3.63
SSBP4-201ENST00000270061 AGLP35573 1532 aa37.7■■■■□ 3.63
SSBP4-201ENST00000270061 MYOM3Q5VTT5 1437 aa37.64■■■■□ 3.62
SSBP4-201ENST00000270061 CCDC141Q6ZP82 1450 aa37.63■■■■□ 3.62
SSBP4-201ENST00000270061 RSPH4AQ5TD94 716 aa37.62■■■■□ 3.61
SSBP4-201ENST00000270061 ADGBQ8N7X0 1667 aa37.6■■■■□ 3.61
SSBP4-201ENST00000270061 RTEL1-TNFRSF6BF6WH68 1400 aa37.59■■■■□ 3.61
SSBP4-201ENST00000270061 MIA2Q96PC5 1412 aa37.59■■■■□ 3.61
SSBP4-201ENST00000270061 ARHGEF5Q12774 1597 aa37.59■■■■□ 3.61
SSBP4-201ENST00000270061 PLPPR3Q6T4P5 718 aa37.58■■■■□ 3.61
SSBP4-201ENST00000270061 A2MP01023 1474 aa37.57■■■■□ 3.61
SSBP4-201ENST00000270061 PLXNC1O60486 1568 aa37.56■■■■□ 3.6
SSBP4-201ENST00000270061 ESF1Q9H501 851 aaKnown RBP37.5■■■■□ 3.59
SSBP4-201ENST00000270061 TSPY4P0CV99 314 aa37.48■■■■□ 3.59
SSBP4-201ENST00000270061 TSPY10P0CW01 314 aa37.48■■■■□ 3.59
SSBP4-201ENST00000270061 PTPN23Q9H3S7 1636 aa37.43■■■■□ 3.58
SSBP4-201ENST00000270061 CEBPAP49715 358 aaPredicted RBP37.42■■■■□ 3.58
SSBP4-201ENST00000270061 C3P01024 1663 aa37.41■■■■□ 3.58
SSBP4-201ENST00000270061 LMTK3Q96Q04 1460 aa37.41■■■■□ 3.58
SSBP4-201ENST00000270061 DHX29Q7Z478 1369 aaKnown RBP37.41■■■■□ 3.58
SSBP4-201ENST00000270061 CNTLNQ9NXG0 1405 aa37.41■■■■□ 3.58
SSBP4-201ENST00000270061 MAST1Q9Y2H9 1570 aa37.39■■■■□ 3.58
SSBP4-201ENST00000270061 SETD1BQ9UPS6 1966 aaKnown RBP37.39■■■■□ 3.58
SSBP4-201ENST00000270061 FGD6Q6ZV73 1430 aa37.38■■■■□ 3.57
SSBP4-201ENST00000270061 GGT6Q6P531 493 aa37.35■■■■□ 3.57
SSBP4-201ENST00000270061 MROH2AA6NES4 1674 aa37.35■■■■□ 3.57
SSBP4-201ENST00000270061 PREX1Q8TCU6 1659 aa37.33■■■■□ 3.57
SSBP4-201ENST00000270061 CLTCQ00610 1675 aaKnown RBP37.32■■■■□ 3.56
SSBP4-201ENST00000270061 TCOF1Q13428 1488 aaKnown RBP37.3■■■■□ 3.56
SSBP4-201ENST00000270061 CROCC2H7BZ55 1655 aa37.3■■■■□ 3.56
SSBP4-201ENST00000270061 KIF3BO15066 747 aa37.27■■■■□ 3.56
SSBP4-201ENST00000270061 PPP6R1Q9UPN7 881 aa37.27■■■■□ 3.56
SSBP4-201ENST00000270061 DNMT1P26358 1616 aaKnown RBP37.25■■■■□ 3.55
SSBP4-201ENST00000270061 ABCC5O15440 1437 aa37.24■■■■□ 3.55
SSBP4-201ENST00000270061 ZMYM3Q14202 1370 aa37.24■■■■□ 3.55
SSBP4-201ENST00000270061 SHANK2Q9UPX8 1470 aa37.24■■■■□ 3.55
SSBP4-201ENST00000270061 DAPK1P53355 1430 aa37.21■■■■□ 3.55
SSBP4-201ENST00000270061 HSPA2P54652 639 aa37.21■■■■□ 3.55
SSBP4-201ENST00000270061 UHRF1BP1Q6BDS2 1440 aa37.19■■■■□ 3.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms