RNA–Protein interactions for RNA: ENST00000256474.2

VHL-201, Transcript of von Hippel-Lindau tumor suppressor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VHL, Length 3,737 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VHL-201ENST00000256474 CTTNBP2Q8WZ74 1663 aa18.39■□□□□ 0.53
VHL-201ENST00000256474 SUPT6HQ7KZ85 1726 aaKnown RBP18.38■□□□□ 0.53
VHL-201ENST00000256474 KDM6BO15054 1643 aa18.37■□□□□ 0.53
VHL-201ENST00000256474 EPRSP07814 1512 aaKnown RBP18.37■□□□□ 0.53
VHL-201ENST00000256474 EHBP1L1Q8N3D4 1523 aa18.37■□□□□ 0.53
VHL-201ENST00000256474 CARD11Q9BXL7 1154 aa18.36■□□□□ 0.53
VHL-201ENST00000256474 CNTLNQ9NXG0 1405 aa18.36■□□□□ 0.53
VHL-201ENST00000256474 NBR1Q14596 966 aa18.35■□□□□ 0.53
VHL-201ENST00000256474 CCDC136Q96JN2 1154 aa18.34■□□□□ 0.53
VHL-201ENST00000256474 DCAF11Q8TEB1 546 aa18.33■□□□□ 0.53
VHL-201ENST00000256474 THOC2Q8NI27 1593 aaKnown RBP18.33■□□□□ 0.52
VHL-201ENST00000256474 PRG4Q92954 1404 aaPredicted RBP18.32■□□□□ 0.52
VHL-201ENST00000256474 UGGT2Q9NYU1 1516 aa18.31■□□□□ 0.52
VHL-201ENST00000256474 NPM2Q86SE8 214 aaKnown RBP18.31■□□□□ 0.52
VHL-201ENST00000256474 HNRNPMP52272 730 aaKnown RBP eCLIP18.3■□□□□ 0.52
VHL-201ENST00000256474 ZNF608Q9ULD9 1512 aaPredicted RBP18.29■□□□□ 0.52
VHL-201ENST00000256474 TSPY4P0CV99 314 aa18.29■□□□□ 0.52
VHL-201ENST00000256474 TSPY10P0CW01 314 aa18.29■□□□□ 0.52
VHL-201ENST00000256474 DENND4BO75064 1496 aaPredicted RBP18.28■□□□□ 0.52
VHL-201ENST00000256474 ANKRD30BQ9BXX2 1392 aa18.28■□□□□ 0.52
VHL-201ENST00000256474 PLEKHD1A6NEE1 506 aa18.28■□□□□ 0.52
VHL-201ENST00000256474 DAPK1P53355 1430 aa18.27■□□□□ 0.52
VHL-201ENST00000256474 LAMC3Q9Y6N6 1575 aa18.27■□□□□ 0.52
VHL-201ENST00000256474 NUP155O75694 1391 aa18.27■□□□□ 0.52
VHL-201ENST00000256474 LRRIQ1Q96JM4 1722 aa18.27■□□□□ 0.52
VHL-201ENST00000256474 AKNAQ7Z591 1439 aa18.27■□□□□ 0.51
VHL-201ENST00000256474 ST20-MTHFSA0A0A6YYL1 179 aa18.27■□□□□ 0.51
VHL-201ENST00000256474 USP47Q96K76 1375 aa18.26■□□□□ 0.51
VHL-201ENST00000256474 ABCC5O15440 1437 aa18.26■□□□□ 0.51
VHL-201ENST00000256474 ZBED9Q6R2W3 1325 aa18.25■□□□□ 0.51
VHL-201ENST00000256474 BCL11AQ9H165 835 aa18.25■□□□□ 0.51
VHL-201ENST00000256474 SAMD9Q5K651 1589 aa18.24■□□□□ 0.51
VHL-201ENST00000256474 IQGAP2Q13576 1575 aa18.23■□□□□ 0.51
VHL-201ENST00000256474 KDM5BQ9UGL1 1544 aa18.23■□□□□ 0.51
VHL-201ENST00000256474 NCOA1Q15788 1441 aa18.22■□□□□ 0.51
VHL-201ENST00000256474 HECW1Q76N89 1606 aa18.22■□□□□ 0.51
VHL-201ENST00000256474 ABCA5Q8WWZ7 1642 aa18.22■□□□□ 0.51
VHL-201ENST00000256474 CC2D1BQ5T0F9 858 aaKnown RBP18.22■□□□□ 0.51
VHL-201ENST00000256474 JPH4Q96JJ6 628 aa18.22■□□□□ 0.51
VHL-201ENST00000256474 MIA2Q96PC5 1412 aa18.2■□□□□ 0.5
VHL-201ENST00000256474 KIF21AQ7Z4S6 1674 aa18.19■□□□□ 0.5
VHL-201ENST00000256474 PLB1Q6P1J6 1458 aa18.19■□□□□ 0.5
VHL-201ENST00000256474 MYT1LQ9UL68 1186 aa18.18■□□□□ 0.5
VHL-201ENST00000256474 RPRD2Q5VT52 1461 aaKnown RBP18.17■□□□□ 0.5
VHL-201ENST00000256474 NUDCQ9Y266 331 aa18.16■□□□□ 0.5
VHL-201ENST00000256474 TCOF1Q13428 1488 aaKnown RBP18.15■□□□□ 0.5
VHL-201ENST00000256474 ANKRD30AQ9BXX3 1397 aa18.14■□□□□ 0.49
VHL-201ENST00000256474 ERCC6Q03468 1493 aa18.14■□□□□ 0.49
VHL-201ENST00000256474 NUP153P49790 1475 aaKnown RBP18.12■□□□□ 0.49
VHL-201ENST00000256474 PAK3O75914 559 aaPredicted RBP18.12■□□□□ 0.49
VHL-201ENST00000256474 NBPF1Q3BBV0 1214 aa18.11■□□□□ 0.49
VHL-201ENST00000256474 FANCIQ9NVI1 1328 aa18.11■□□□□ 0.49
VHL-201ENST00000256474 PLIN1O60240 522 aa18.11■□□□□ 0.49
VHL-201ENST00000256474 ANKRD50Q9ULJ7 1429 aa18.11■□□□□ 0.49
VHL-201ENST00000256474 ANP32AP39687 249 aaKnown RBP18.11■□□□□ 0.49
VHL-201ENST00000256474 WDR62O43379 1518 aa18.1■□□□□ 0.49
VHL-201ENST00000256474 ROCK2O75116 1388 aaKnown RBP18.1■□□□□ 0.49
VHL-201ENST00000256474 PNISRQ8TF01 805 aaKnown RBP18.09■□□□□ 0.49
VHL-201ENST00000256474 EXOC6Q8TAG9 804 aa18.09■□□□□ 0.49
VHL-201ENST00000256474 ARHGEF11O15085 1522 aa18.09■□□□□ 0.49
VHL-201ENST00000256474 SKAP1Q86WV1 359 aa18.08■□□□□ 0.49
VHL-201ENST00000256474 CAMSAP2Q08AD1 1489 aa18.07■□□□□ 0.48
VHL-201ENST00000256474 CDCA7LQ96GN5 454 aa18.07■□□□□ 0.48
VHL-201ENST00000256474 NOP58Q9Y2X3 529 aaKnown RBP18.07■□□□□ 0.48
VHL-201ENST00000256474 ROCK1Q13464 1354 aa18.07■□□□□ 0.48
VHL-201ENST00000256474 TEX14Q8IWB6 1497 aa18.07■□□□□ 0.48
VHL-201ENST00000256474 MRC2Q9UBG0 1479 aa18.07■□□□□ 0.48
VHL-201ENST00000256474 TARBP1Q13395 1621 aaKnown RBP18.07■□□□□ 0.48
VHL-201ENST00000256474 KIAA1107Q9UPP5 1409 aa18.07■□□□□ 0.48
VHL-201ENST00000256474 TROQ12816 1431 aaPredicted RBP18.06■□□□□ 0.48
VHL-201ENST00000256474 ERICH6BQ5W0A0 696 aa18.06■□□□□ 0.48
VHL-201ENST00000256474 SENP3Q9H4L4 574 aaPredicted RBP18.05■□□□□ 0.48
VHL-201ENST00000256474 KIAA0586Q9BVV6 1533 aa18.05■□□□□ 0.48
VHL-201ENST00000256474 DISP1Q96F81 1524 aa18.04■□□□□ 0.48
VHL-201ENST00000256474 PZPP20742 1482 aa18.03■□□□□ 0.48
VHL-201ENST00000256474 ZBTB47Q9UFB7 747 aaPredicted RBP18.03■□□□□ 0.48
VHL-201ENST00000256474 ADAMTS12P58397 1594 aa18.03■□□□□ 0.48
VHL-201ENST00000256474 DHX29Q7Z478 1369 aaKnown RBP18.03■□□□□ 0.48
VHL-201ENST00000256474 SPATA31E1Q6ZUB1 1445 aa18.02■□□□□ 0.48
VHL-201ENST00000256474 KIF15Q9NS87 1388 aa18.02■□□□□ 0.48
VHL-201ENST00000256474 GCC2Q8IWJ2 1684 aa18.02■□□□□ 0.48
VHL-201ENST00000256474 GPATCH8Q9UKJ3 1502 aaKnown RBP18.01■□□□□ 0.47
VHL-201ENST00000256474 RCAN3Q9UKA8 241 aa18.01■□□□□ 0.47
VHL-201ENST00000256474 LAS1LQ9Y4W2 734 aaKnown RBP18.01■□□□□ 0.47
VHL-201ENST00000256474 CARMIL2Q6F5E8 1435 aa18.01■□□□□ 0.47
VHL-201ENST00000256474 DEKP35659 375 aaKnown RBP18.01■□□□□ 0.47
VHL-201ENST00000256474 RTL5Q5HYW3 569 aaPredicted RBP18.01■□□□□ 0.47
VHL-201ENST00000256474 PBRM1Q86U86 1689 aa18■□□□□ 0.47
VHL-201ENST00000256474 GRIN2AQ12879 1464 aa18■□□□□ 0.47
VHL-201ENST00000256474 PANK3Q9H999 370 aa17.98■□□□□ 0.47
VHL-201ENST00000256474 MYBBP1AQ9BQG0 1328 aaKnown RBP17.98■□□□□ 0.47
VHL-201ENST00000256474 C9orf84Q5VXU9 1444 aa17.98■□□□□ 0.47
VHL-201ENST00000256474 IFT140Q96RY7 1462 aa17.97■□□□□ 0.47
VHL-201ENST00000256474 RRP1P56182 461 aaKnown RBP17.96■□□□□ 0.47
VHL-201ENST00000256474 KIAA0556O60303 1618 aa17.96■□□□□ 0.47
VHL-201ENST00000256474 SMG6Q86US8 1419 aaKnown RBP17.95■□□□□ 0.46
VHL-201ENST00000256474 KIF14Q15058 1648 aa17.95■□□□□ 0.46
VHL-201ENST00000256474 RAPGEF6Q8TEU7 1601 aa17.95■□□□□ 0.46
VHL-201ENST00000256474 DNMT1P26358 1616 aaKnown RBP17.94■□□□□ 0.46
VHL-201ENST00000256474 NLRP13Q86W25 1043 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms