RNA–Protein interactions for RNA: ENST00000216211.8

UPK3A-201, Transcript of uroplakin 3A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene UPK3A, Length 1,051 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3A-201ENST00000216211 TROQ12816 1431 aaPredicted RBP24.55■■□□□ 1.52
UPK3A-201ENST00000216211 SCAPERQ9BY12 1400 aa24.54■■□□□ 1.52
UPK3A-201ENST00000216211 RIMS1Q86UR5 1692 aaKnown RBP24.53■■□□□ 1.52
UPK3A-201ENST00000216211 YEATS2Q9ULM3 1422 aa24.52■■□□□ 1.52
UPK3A-201ENST00000216211 CLIP1P30622 1438 aa24.52■■□□□ 1.52
UPK3A-201ENST00000216211 POGZQ7Z3K3 1410 aa24.52■■□□□ 1.52
UPK3A-201ENST00000216211 CASKIN1Q8WXD9 1431 aa24.5■■□□□ 1.51
UPK3A-201ENST00000216211 MAGI2Q86UL8 1455 aa24.5■■□□□ 1.51
UPK3A-201ENST00000216211 EFCAB2Q5VUJ9 269 aa24.49■■□□□ 1.51
UPK3A-201ENST00000216211 CDC42BPBQ9Y5S2 1711 aa24.49■■□□□ 1.51
UPK3A-201ENST00000216211 ARHGAP5Q13017 1502 aa24.48■■□□□ 1.51
UPK3A-201ENST00000216211 CCDC18Q5T9S5 1454 aa24.47■■□□□ 1.51
UPK3A-201ENST00000216211 PREX2Q70Z35 1606 aa24.43■■□□□ 1.5
UPK3A-201ENST00000216211 FER1L4A9Z1Z3 1794 aa24.42■■□□□ 1.5
UPK3A-201ENST00000216211 FYCO1Q9BQS8 1478 aa24.41■■□□□ 1.5
UPK3A-201ENST00000216211 ZNF518AQ6AHZ1 1483 aa24.39■■□□□ 1.5
UPK3A-201ENST00000216211 CDC42BPAQ5VT25 1732 aa24.39■■□□□ 1.5
UPK3A-201ENST00000216211 ATP10AO60312 1499 aa24.38■■□□□ 1.49
UPK3A-201ENST00000216211 KDM5CP41229 1560 aa24.38■■□□□ 1.49
UPK3A-201ENST00000216211 MLECQ14165 292 aa24.38■■□□□ 1.49
UPK3A-201ENST00000216211 C9orf84Q5VXU9 1444 aa24.36■■□□□ 1.49
UPK3A-201ENST00000216211 ILDR1Q86SU0 546 aaPredicted RBP24.36■■□□□ 1.49
UPK3A-201ENST00000216211 ITSN2Q9NZM3 1697 aa24.36■■□□□ 1.49
UPK3A-201ENST00000216211 PLPPR3Q6T4P5 718 aa24.35■■□□□ 1.49
UPK3A-201ENST00000216211 AFAP1Q8N556 730 aa24.35■■□□□ 1.49
UPK3A-201ENST00000216211 ABCC1P33527 1531 aa24.34■■□□□ 1.49
UPK3A-201ENST00000216211 LMTK3Q96Q04 1460 aa24.33■■□□□ 1.49
UPK3A-201ENST00000216211 DIP2CQ9Y2E4 1556 aa24.32■■□□□ 1.48
UPK3A-201ENST00000216211 MYT1LQ9UL68 1186 aa24.31■■□□□ 1.48
UPK3A-201ENST00000216211 ARHGEF12Q9NZN5 1544 aa24.3■■□□□ 1.48
UPK3A-201ENST00000216211 ABCA6Q8N139 1617 aa24.3■■□□□ 1.48
UPK3A-201ENST00000216211 TRAPPC8Q9Y2L5 1435 aa24.27■■□□□ 1.48
UPK3A-201ENST00000216211 MLH3Q9UHC1 1453 aa24.26■■□□□ 1.47
UPK3A-201ENST00000216211 SAMD9LQ8IVG5 1584 aa24.25■■□□□ 1.47
UPK3A-201ENST00000216211 REREQ9P2R6 1566 aa24.24■■□□□ 1.47
UPK3A-201ENST00000216211 KIDINS220Q9ULH0 1771 aa24.24■■□□□ 1.47
UPK3A-201ENST00000216211 GPATCH8Q9UKJ3 1502 aaKnown RBP24.21■■□□□ 1.47
UPK3A-201ENST00000216211 ZNF777Q9ULD5 760 aaPredicted RBP24.21■■□□□ 1.47
UPK3A-201ENST00000216211 SYCP2Q9BX26 1530 aa24.2■■□□□ 1.46
UPK3A-201ENST00000216211 HSPA2P54652 639 aa24.19■■□□□ 1.46
UPK3A-201ENST00000216211 PREX1Q8TCU6 1659 aa24.18■■□□□ 1.46
UPK3A-201ENST00000216211 CEP162Q5TB80 1403 aa24.17■■□□□ 1.46
UPK3A-201ENST00000216211 CEBPAP49715 358 aaPredicted RBP24.16■■□□□ 1.46
UPK3A-201ENST00000216211 MTUS2Q5JR59 1369 aa24.16■■□□□ 1.46
UPK3A-201ENST00000216211 AGLP35573 1532 aa24.15■■□□□ 1.46
UPK3A-201ENST00000216211 CCNB3Q8WWL7 1395 aa24.14■■□□□ 1.45
UPK3A-201ENST00000216211 C3P01024 1663 aa24.13■■□□□ 1.45
UPK3A-201ENST00000216211 HNRNPMP52272 730 aaKnown RBP eCLIP24.12■■□□□ 1.45
UPK3A-201ENST00000216211 EHBP1L1Q8N3D4 1523 aa24.11■■□□□ 1.45
UPK3A-201ENST00000216211 CFDP1Q9UEE9 299 aaPredicted RBP24.11■■□□□ 1.45
UPK3A-201ENST00000216211 TIAM1Q13009 1591 aa24.11■■□□□ 1.45
UPK3A-201ENST00000216211 SUPT6HQ7KZ85 1726 aaKnown RBP24.1■■□□□ 1.45
UPK3A-201ENST00000216211 PLEKHH2Q8IVE3 1493 aa24.08■■□□□ 1.45
UPK3A-201ENST00000216211 SETD1BQ9UPS6 1966 aaKnown RBP24.08■■□□□ 1.45
UPK3A-201ENST00000216211 SPAG9O60271 1321 aaKnown RBP24.08■■□□□ 1.44
UPK3A-201ENST00000216211 ATP7AQ04656 1500 aa24.07■■□□□ 1.44
UPK3A-201ENST00000216211 KIAA1107Q9UPP5 1409 aa24.07■■□□□ 1.44
UPK3A-201ENST00000216211 INO80Q9ULG1 1556 aaPredicted RBP24.07■■□□□ 1.44
UPK3A-201ENST00000216211 ESF1Q9H501 851 aaKnown RBP24.04■■□□□ 1.44
UPK3A-201ENST00000216211 FBXO41Q8TF61 875 aa24.02■■□□□ 1.44
UPK3A-201ENST00000216211 UHRF1BP1Q6BDS2 1440 aa24.01■■□□□ 1.43
UPK3A-201ENST00000216211 STRCQ7RTU9 1775 aa24.01■■□□□ 1.43
UPK3A-201ENST00000216211 ZNF644Q9H582 1327 aaPredicted RBP24■■□□□ 1.43
UPK3A-201ENST00000216211 PLXNC1O60486 1568 aa23.99■■□□□ 1.43
UPK3A-201ENST00000216211 MROH2AA6NES4 1674 aa23.99■■□□□ 1.43
UPK3A-201ENST00000216211 ADGBQ8N7X0 1667 aa23.99■■□□□ 1.43
UPK3A-201ENST00000216211 LOC105371045A0A1W2PR82 267 aa23.98■■□□□ 1.43
UPK3A-201ENST00000216211 CNTLNQ9NXG0 1405 aa23.98■■□□□ 1.43
UPK3A-201ENST00000216211 A2MP01023 1474 aa23.98■■□□□ 1.43
UPK3A-201ENST00000216211 CLTCQ00610 1675 aaKnown RBP23.97■■□□□ 1.43
UPK3A-201ENST00000216211 NCOA2Q15596 1464 aa23.95■■□□□ 1.42
UPK3A-201ENST00000216211 MBD5Q9P267 1494 aa23.95■■□□□ 1.42
UPK3A-201ENST00000216211 CAMSAP2Q08AD1 1489 aa23.9■■□□□ 1.42
UPK3A-201ENST00000216211 VPS8Q8N3P4 1428 aa23.9■■□□□ 1.42
UPK3A-201ENST00000216211 ZMYM3Q14202 1370 aa23.89■■□□□ 1.41
UPK3A-201ENST00000216211 GGT6Q6P531 493 aa23.87■■□□□ 1.41
UPK3A-201ENST00000216211 RTEL1-TNFRSF6BF6WH68 1400 aa23.86■■□□□ 1.41
UPK3A-201ENST00000216211 CCDC141Q6ZP82 1450 aa23.86■■□□□ 1.41
UPK3A-201ENST00000216211 NPATQ14207 1427 aa23.85■■□□□ 1.41
UPK3A-201ENST00000216211 CERKQ8TCT0 537 aa23.85■■□□□ 1.41
UPK3A-201ENST00000216211 LRRC9Q6ZRR7 1453 aa23.85■■□□□ 1.41
UPK3A-201ENST00000216211 DMRT2Q9Y5R5 561 aa23.84■■□□□ 1.41
UPK3A-201ENST00000216211 MYO3AQ8NEV4 1616 aa23.82■■□□□ 1.4
UPK3A-201ENST00000216211 ARHGEF5Q12774 1597 aa23.81■■□□□ 1.4
UPK3A-201ENST00000216211 DHX29Q7Z478 1369 aaKnown RBP23.8■■□□□ 1.4
UPK3A-201ENST00000216211 CAMSAP1Q5T5Y3 1602 aa23.8■■□□□ 1.4
UPK3A-201ENST00000216211 ZNF142P52746 1687 aaPredicted RBP23.79■■□□□ 1.4
UPK3A-201ENST00000216211 PTPRTO14522 1441 aa23.78■■□□□ 1.4
UPK3A-201ENST00000216211 NCOA1Q15788 1441 aa23.78■■□□□ 1.4
UPK3A-201ENST00000216211 PTPRKQ15262 1439 aa23.77■■□□□ 1.4
UPK3A-201ENST00000216211 MAP3K1Q13233 1512 aa23.77■■□□□ 1.4
UPK3A-201ENST00000216211 RSPH4AQ5TD94 716 aa23.76■■□□□ 1.39
UPK3A-201ENST00000216211 PPP6R1Q9UPN7 881 aa23.76■■□□□ 1.39
UPK3A-201ENST00000216211 KANK4Q5T7N3 995 aaPredicted RBP23.75■■□□□ 1.39
UPK3A-201ENST00000216211 CEP170BQ9Y4F5 1589 aaPredicted RBP23.74■■□□□ 1.39
UPK3A-201ENST00000216211 KIF3BO15066 747 aa23.73■■□□□ 1.39
UPK3A-201ENST00000216211 TSPY4P0CV99 314 aa23.71■■□□□ 1.39
UPK3A-201ENST00000216211 TSPY10P0CW01 314 aa23.71■■□□□ 1.39
UPK3A-201ENST00000216211 MAST1Q9Y2H9 1570 aa23.69■■□□□ 1.38
UPK3A-201ENST00000216211 KDM5DQ9BY66 1539 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms