RNA–Protein interactions for RNA: ENST00000035307.6

CHPF2-201, Transcript of chondroitin polymerizing factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHPF2, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHPF2-201ENST00000035307 CARD11Q9BXL7 1154 aa16.5■□□□□ 0.23
CHPF2-201ENST00000035307 SAFB2Q14151 953 aaKnown RBP eCLIP16.49■□□□□ 0.23
CHPF2-201ENST00000035307 MYOM3Q5VTT5 1437 aa16.48■□□□□ 0.23
CHPF2-201ENST00000035307 SPAG9O60271 1321 aaKnown RBP16.48■□□□□ 0.23
CHPF2-201ENST00000035307 KIAA0586Q9BVV6 1533 aa16.48■□□□□ 0.23
CHPF2-201ENST00000035307 SYNJ2O15056 1496 aa16.46■□□□□ 0.23
CHPF2-201ENST00000035307 IQGAP2Q13576 1575 aa16.46■□□□□ 0.23
CHPF2-201ENST00000035307 CLSPNQ9HAW4 1339 aa16.45■□□□□ 0.22
CHPF2-201ENST00000035307 FAM69CQ0P6D2 419 aa16.45■□□□□ 0.22
CHPF2-201ENST00000035307 PPP1R15AO75807 674 aaPredicted RBP16.44■□□□□ 0.22
CHPF2-201ENST00000035307 TIAM1Q13009 1591 aa16.44■□□□□ 0.22
CHPF2-201ENST00000035307 ANKRD30AQ9BXX3 1397 aa16.44■□□□□ 0.22
CHPF2-201ENST00000035307 HSPA5P11021 654 aaKnown RBP16.44■□□□□ 0.22
CHPF2-201ENST00000035307 FYCO1Q9BQS8 1478 aa16.43■□□□□ 0.22
CHPF2-201ENST00000035307 EPRSP07814 1512 aaKnown RBP16.41■□□□□ 0.22
CHPF2-201ENST00000035307 NPM2Q86SE8 214 aaKnown RBP16.41■□□□□ 0.22
CHPF2-201ENST00000035307 DAXXQ9UER7 740 aaPredicted RBP16.41■□□□□ 0.22
CHPF2-201ENST00000035307 SUPT16HQ9Y5B9 1047 aaKnown RBP16.41■□□□□ 0.22
CHPF2-201ENST00000035307 RAPGEF3O95398 923 aa16.4■□□□□ 0.22
CHPF2-201ENST00000035307 TMC1Q8TDI8 760 aa16.4■□□□□ 0.22
CHPF2-201ENST00000035307 RRBP1Q9P2E9 1410 aaKnown RBP16.37■□□□□ 0.21
CHPF2-201ENST00000035307 STK26Q9P289 416 aa16.37■□□□□ 0.21
CHPF2-201ENST00000035307 CUL7Q14999 1698 aa16.37■□□□□ 0.21
CHPF2-201ENST00000035307 ARHGEF11O15085 1522 aa16.36■□□□□ 0.21
CHPF2-201ENST00000035307 EFCAB5A4FU69 1503 aa16.36■□□□□ 0.21
CHPF2-201ENST00000035307 TNNT2P45379 298 aaPredicted RBP16.35■□□□□ 0.21
CHPF2-201ENST00000035307 MAGI1Q96QZ7 1491 aaPredicted RBP16.34■□□□□ 0.21
CHPF2-201ENST00000035307 EIF4G3O43432 1585 aaKnown RBP16.34■□□□□ 0.21
CHPF2-201ENST00000035307 KIF15Q9NS87 1388 aa16.33■□□□□ 0.2
CHPF2-201ENST00000035307 WASHC2CQ9Y4E1 1318 aa16.32■□□□□ 0.2
CHPF2-201ENST00000035307 TROQ12816 1431 aaPredicted RBP16.31■□□□□ 0.2
CHPF2-201ENST00000035307 THOC2Q8NI27 1593 aaKnown RBP16.31■□□□□ 0.2
CHPF2-201ENST00000035307 CC2D1BQ5T0F9 858 aaKnown RBP16.3■□□□□ 0.2
CHPF2-201ENST00000035307 PTPRKQ15262 1439 aa16.29■□□□□ 0.2
CHPF2-201ENST00000035307 UACAQ9BZF9 1416 aa16.28■□□□□ 0.2
CHPF2-201ENST00000035307 ARHGAP5Q13017 1502 aa16.27■□□□□ 0.2
CHPF2-201ENST00000035307 WDR62O43379 1518 aa16.26■□□□□ 0.19
CHPF2-201ENST00000035307 ANKRD50Q9ULJ7 1429 aa16.25■□□□□ 0.19
CHPF2-201ENST00000035307 RTL5Q5HYW3 569 aaPredicted RBP16.25■□□□□ 0.19
CHPF2-201ENST00000035307 CCDC136Q96JN2 1154 aa16.25■□□□□ 0.19
CHPF2-201ENST00000035307 SCAPERQ9BY12 1400 aa16.25■□□□□ 0.19
CHPF2-201ENST00000035307 ADAMTS12P58397 1594 aa16.24■□□□□ 0.19
CHPF2-201ENST00000035307 TARBP1Q13395 1621 aaKnown RBP16.24■□□□□ 0.19
CHPF2-201ENST00000035307 ST20-MTHFSA0A0A6YYL1 179 aa16.24■□□□□ 0.19
CHPF2-201ENST00000035307 SLC24A1O60721 1099 aa16.24■□□□□ 0.19
CHPF2-201ENST00000035307 NUTM2FA1L443 756 aa16.23■□□□□ 0.19
CHPF2-201ENST00000035307 CANXP27824 592 aaKnown RBP16.23■□□□□ 0.19
CHPF2-201ENST00000035307 NUP153P49790 1475 aaKnown RBP16.23■□□□□ 0.19
CHPF2-201ENST00000035307 HECW1Q76N89 1606 aa16.22■□□□□ 0.19
CHPF2-201ENST00000035307 KANK1Q14678 1352 aa16.22■□□□□ 0.19
CHPF2-201ENST00000035307 ABCA5Q8WWZ7 1642 aa16.21■□□□□ 0.19
CHPF2-201ENST00000035307 NAIPQ13075 1403 aa16.21■□□□□ 0.19
CHPF2-201ENST00000035307 NBPF8Q3BBV2 869 aa16.21■□□□□ 0.19
CHPF2-201ENST00000035307 PPM1GO15355 546 aaPredicted RBP16.2■□□□□ 0.18
CHPF2-201ENST00000035307 SOX12O15370 315 aa16.2■□□□□ 0.18
CHPF2-201ENST00000035307 TRAK1Q9UPV9 953 aa16.2■□□□□ 0.18
CHPF2-201ENST00000035307 ATP10BO94823 1461 aa16.2■□□□□ 0.18
CHPF2-201ENST00000035307 EHBP1L1Q8N3D4 1523 aa16.2■□□□□ 0.18
CHPF2-201ENST00000035307 NBR1Q14596 966 aa16.19■□□□□ 0.18
CHPF2-201ENST00000035307 RSPH4AQ5TD94 716 aa16.19■□□□□ 0.18
CHPF2-201ENST00000035307 B4GALNT3Q6L9W6 998 aa16.19■□□□□ 0.18
CHPF2-201ENST00000035307 ROCK2O75116 1388 aaKnown RBP16.19■□□□□ 0.18
CHPF2-201ENST00000035307 DISP1Q96F81 1524 aa16.18■□□□□ 0.18
CHPF2-201ENST00000035307 DAPK1P53355 1430 aa16.18■□□□□ 0.18
CHPF2-201ENST00000035307 ZBTB7CA1YPR0 619 aa16.18■□□□□ 0.18
CHPF2-201ENST00000035307 POGKQ9P215 609 aa16.18■□□□□ 0.18
CHPF2-201ENST00000035307 C9orf84Q5VXU9 1444 aa16.17■□□□□ 0.18
CHPF2-201ENST00000035307 NBPF1Q3BBV0 1214 aa16.17■□□□□ 0.18
CHPF2-201ENST00000035307 ABCC5O15440 1437 aa16.16■□□□□ 0.18
CHPF2-201ENST00000035307 NEUROD2Q15784 382 aa16.15■□□□□ 0.18
CHPF2-201ENST00000035307 C14orf37Q86TY3 774 aa16.15■□□□□ 0.18
CHPF2-201ENST00000035307 PBRM1Q86U86 1689 aa16.15■□□□□ 0.18
CHPF2-201ENST00000035307 SUPT6HQ7KZ85 1726 aaKnown RBP16.15■□□□□ 0.18
CHPF2-201ENST00000035307 TMEM132EQ6IEE7 984 aa16.14■□□□□ 0.17
CHPF2-201ENST00000035307 CTTNBP2Q8WZ74 1663 aa16.14■□□□□ 0.17
CHPF2-201ENST00000035307 CCDC144AA2RUR9 1427 aa16.13■□□□□ 0.17
CHPF2-201ENST00000035307 TIMELESSQ9UNS1 1208 aa16.13■□□□□ 0.17
CHPF2-201ENST00000035307 HFM1A2PYH4 1435 aa16.13■□□□□ 0.17
CHPF2-201ENST00000035307 CEP170Q5SW79 1584 aa16.12■□□□□ 0.17
CHPF2-201ENST00000035307 ANP32AP39687 249 aaKnown RBP16.11■□□□□ 0.17
CHPF2-201ENST00000035307 KNSTRNQ9Y448 316 aa16.11■□□□□ 0.17
CHPF2-201ENST00000035307 CAMSAP2Q08AD1 1489 aa16.11■□□□□ 0.17
CHPF2-201ENST00000035307 SRPK2P78362 688 aaKnown RBP16.11■□□□□ 0.17
CHPF2-201ENST00000035307 PTPN23Q9H3S7 1636 aa16.1■□□□□ 0.17
CHPF2-201ENST00000035307 GPATCH8Q9UKJ3 1502 aaKnown RBP16.09■□□□□ 0.17
CHPF2-201ENST00000035307 MIA2Q96PC5 1412 aa16.09■□□□□ 0.17
CHPF2-201ENST00000035307 KIAA0556O60303 1618 aa16.09■□□□□ 0.17
CHPF2-201ENST00000035307 MAGI3Q5TCQ9 1506 aa16.08■□□□□ 0.17
CHPF2-201ENST00000035307 NUP160Q12769 1436 aa16.08■□□□□ 0.16
CHPF2-201ENST00000035307 WDR43Q15061 677 aaKnown RBP eCLIP16.07■□□□□ 0.16
CHPF2-201ENST00000035307 CFAP70Q5T0N1 1121 aa16.07■□□□□ 0.16
CHPF2-201ENST00000035307 LMOD2Q6P5Q4 547 aa16.07■□□□□ 0.16
CHPF2-201ENST00000035307 TMF1P82094 1093 aa16.06■□□□□ 0.16
CHPF2-201ENST00000035307 RAPGEF6Q8TEU7 1601 aa16.06■□□□□ 0.16
CHPF2-201ENST00000035307 UGGT2Q9NYU1 1516 aa16.05■□□□□ 0.16
CHPF2-201ENST00000035307 WDR97A6NE52 1622 aa16.05■□□□□ 0.16
CHPF2-201ENST00000035307 ERCC6L2Q5T890 1561 aa16.04■□□□□ 0.16
CHPF2-201ENST00000035307 NCOA1Q15788 1441 aa16.03■□□□□ 0.16
CHPF2-201ENST00000035307 C11orf95C9JLR9 678 aaPredicted RBP16.03■□□□□ 0.16
CHPF2-201ENST00000035307 CD109Q6YHK3 1445 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms