RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	SDH1	Q00711	640 aa		10.45	□□□□□ -0.74
VPS60	YDR486C	PRP38	Q00723	242 aa	Predicted RBP	10.45	□□□□□ -0.74
VPS60	YDR486C	SGT1	Q08446	395 aa		10.45	□□□□□ -0.74
VPS60	YDR486C	TFB4	Q12004	338 aa		10.45	□□□□□ -0.74
VPS60	YDR486C	IOC2	Q12072	812 aa		10.45	□□□□□ -0.74
VPS60	YDR486C	RGT2	Q12300	763 aa		10.45	□□□□□ -0.74
VPS60	YDR486C	MHT1	Q12525	324 aa		10.45	□□□□□ -0.74
VPS60	YDR486C	AI3	P03877	415 aa		10.44	□□□□□ -0.74
VPS60	YDR486C	DST1	P07273	309 aa		10.44	□□□□□ -0.74
VPS60	YDR486C	SCL1	P21243	252 aa	Known RBP	10.44	□□□□□ -0.74
VPS60	YDR486C	FRE2	P36033	711 aa		10.44	□□□□□ -0.74
VPS60	YDR486C	NDE1	P40215	560 aa		10.44	□□□□□ -0.74
VPS60	YDR486C	YIL108W	P40483	696 aa	Known RBP	10.44	□□□□□ -0.74
VPS60	YDR486C	SGF73	P53165	657 aa		10.44	□□□□□ -0.74
VPS60	YDR486C	YDR476C	Q03362	224 aa		10.44	□□□□□ -0.74
VPS60	YDR486C	YDR124W	Q04608	324 aa		10.44	□□□□□ -0.74
VPS60	YDR486C	YLR413W	Q06689	675 aa		10.44	□□□□□ -0.74
VPS60	YDR486C	UAF30	Q08747	228 aa		10.44	□□□□□ -0.74
VPS60	YDR486C	SNX3	Q08826	162 aa	Known RBP	10.44	□□□□□ -0.74
VPS60	YDR486C	PFA4	Q12006	378 aa		10.44	□□□□□ -0.74
VPS60	YDR486C	ATG29	Q12092	213 aa		10.44	□□□□□ -0.74
VPS60	YDR486C	HXT4	P32467	576 aa		10.43	□□□□□ -0.74
VPS60	YDR486C	UBP14	P38237	781 aa	Known RBP	10.43	□□□□□ -0.74
VPS60	YDR486C	HXT6	P39003	570 aa	Known RBP	10.43	□□□□□ -0.74
VPS60	YDR486C	HXT7	P39004	570 aa		10.43	□□□□□ -0.74
VPS60	YDR486C	MPS1	P54199	764 aa		10.43	□□□□□ -0.74
VPS60	YDR486C	PRO2	P54885	456 aa	Known RBP	10.43	□□□□□ -0.74
VPS60	YDR486C	CTK1	Q03957	528 aa	Known RBP	10.43	□□□□□ -0.74
VPS60	YDR486C	YDR444W	Q04093	687 aa		10.43	□□□□□ -0.74
VPS60	YDR486C	YFT2	Q06676	274 aa		10.43	□□□□□ -0.74
VPS60	YDR486C	SUL2	Q12325	893 aa		10.43	□□□□□ -0.74
VPS60	YDR486C	YCL012C	Q8J0M4	134 aa		10.43	□□□□□ -0.74
VPS60	YDR486C	NHA1	Q99271	985 aa		10.43	□□□□□ -0.74
VPS60	YDR486C	HRP1	Q99383	534 aa	Known RBP	10.43	□□□□□ -0.74
VPS60	YDR486C	HTA2	P04912	132 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	SGV1	P23293	657 aa	Known RBP	10.42	□□□□□ -0.74
VPS60	YDR486C	MEF1	P25039	761 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	10.42	□□□□□ -0.74	not detected
VPS60	YDR486C	PHO91	P27514	894 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	ZIP1	P31111	875 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	EMC3	P36039	253 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	MRPL37	P36532	105 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	HPM1	P40481	377 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	IAH1	P41734	238 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	SSU1	P41930	458 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	MEP2	P41948	499 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	ARC35	P53731	342 aa	Known RBP	10.42	□□□□□ -0.74
VPS60	YDR486C	SWS2	P53937	143 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	YNL035C	P53962	389 aa	Known RBP	10.42	□□□□□ -0.74
VPS60	YDR486C	MCH5	Q08777	521 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	YIG1	Q08956	461 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	GPR1	Q12361	961 aa		10.42	□□□□□ -0.74
VPS60	YDR486C	PHO81	P17442	1178 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	SAN1	P22470	610 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	PHO87	P25360	923 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	FTH1	P38310	465 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	DMA1	P38823	416 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	ALG5	P40350	334 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	ZIM17	P42844	174 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	MPS3	P47069	682 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	GTO1	P48239	356 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	GIP3	Q03016	1276 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	TRM82	Q03774	444 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	ECM11	Q04110	302 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	BSC2	Q05611	235 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	YVC1	Q12324	675 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	JLP1	Q12358	412 aa		10.41	□□□□□ -0.74
VPS60	YDR486C	RED1	P14291	827 aa		10.4	□□□□□ -0.74
VPS60	YDR486C	PDC5	P16467	563 aa	Known RBP	10.4	□□□□□ -0.74
VPS60	YDR486C	CCA1	P21269	546 aa		10.4	□□□□□ -0.74
VPS60	YDR486C	PPH21	P23594	369 aa		10.4	□□□□□ -0.74
VPS60	YDR486C	YBR071W	P38243	211 aa		10.4	□□□□□ -0.74
VPS60	YDR486C	GGC1	P38988	300 aa		10.4	□□□□□ -0.74
VPS60	YDR486C	CAB2	P40506	365 aa		10.4	□□□□□ -0.74
VPS60	YDR486C	NUP85	P46673	744 aa		10.4	□□□□□ -0.74
VPS60	YDR486C	MTR3	P48240	250 aa	Predicted RBP	10.4	□□□□□ -0.74
VPS60	YDR486C	MET31	Q03081	177 aa		10.4	□□□□□ -0.74
VPS60	YDR486C	ACL4	Q03771	387 aa		10.4	□□□□□ -0.74
VPS60	YDR486C	DYN3	Q04949	312 aa		10.4	□□□□□ -0.74
VPS60	YDR486C	EAF1	Q06337	982 aa		10.4	□□□□□ -0.74
VPS60	YDR486C	BCP1	Q06338	283 aa		10.4	□□□□□ -0.74
VPS60	YDR486C	YKL018C-A	Q3E7A7	99 aa		10.4	□□□□□ -0.74
VPS60	YDR486C	ATP6	P00854	259 aa		10.39	□□□□□ -0.75
VPS60	YDR486C	RDS2	P19541	446 aa	Known RBP	10.39	□□□□□ -0.75
VPS60	YDR486C	SPS22	P25380	463 aa		10.39	□□□□□ -0.75
VPS60	YDR486C	TFB1	P32776	642 aa		10.39	□□□□□ -0.75
VPS60	YDR486C	YCR087C-A	P37263	153 aa		10.39	□□□□□ -0.75
VPS60	YDR486C	TRM7	P38238	310 aa	Known RBP	10.39	□□□□□ -0.75
VPS60	YDR486C	MET12	P46151	657 aa		10.39	□□□□□ -0.75
VPS60	YDR486C	KXD1	P53158	218 aa		10.39	□□□□□ -0.75
VPS60	YDR486C	RPN8	Q08723	338 aa	Known RBP	10.39	□□□□□ -0.75
VPS60	YDR486C	NSL1	Q12143	216 aa		10.39	□□□□□ -0.75
VPS60	YDR486C	HAL9	Q12180	1030 aa		10.39	□□□□□ -0.75
VPS60	YDR486C	BRR1	Q99177	341 aa	Predicted RBP	10.39	□□□□□ -0.75
VPS60	YDR486C	LEU4	P06208	619 aa	Known RBP	10.38	□□□□□ -0.75
VPS60	YDR486C	RPS21A	P0C0V8	87 aa	Known RBP	10.38	□□□□□ -0.75
VPS60	YDR486C	RPS4A	P0CX35	261 aa	Known RBP	10.38	□□□□□ -0.75
VPS60	YDR486C	RPS4B	P0CX36	261 aa	Known RBP	10.38	□□□□□ -0.75
VPS60	YDR486C	TRX3	P25372	127 aa		10.38	□□□□□ -0.75
VPS60	YDR486C	FUN30	P31380	1131 aa		10.38	□□□□□ -0.75

Retrieved 100 of 5,963 RNA–protein pairs in 8 ms