RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP28	YDR243C	TSC10	P38342	320 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	MIP6	P38760	659 aa	Known RBP	4.4	□□□□□ -1.7
PRP28	YDR243C	GIC1	P38785	314 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	PTC7	P38797	343 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	NVJ1	P38881	321 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	AIM18	P38884	321 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	LYS9	P38999	446 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	AKR1	P39010	764 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	RSP5	P39940	809 aa	Known RBP	4.4	□□□□□ -1.7
PRP28	YDR243C	SAH1	P39954	449 aa	Known RBP	4.4	□□□□□ -1.7
PRP28	YDR243C	YIL166C	P40445	542 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	ICE2	P40499	491 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	CIN1	P40987	1014 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	CCT7	P42943	550 aa	Known RBP	4.4	□□□□□ -1.7
PRP28	YDR243C	AIM14	P53109	570 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	MLC1	P53141	149 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	YGR021W	P53212	290 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	GTF1	P53260	183 aa	Predicted RBP	4.4	□□□□□ -1.7
PRP28	YDR243C	RSM27	P53305	110 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	MTD1	Q02046	320 aa	Known RBP	4.4	□□□□□ -1.7
PRP28	YDR243C	SKI8	Q02793	397 aa	Predicted RBP	4.4	□□□□□ -1.7
PRP28	YDR243C	YMR187C	Q03236	431 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	SSL1	Q04673	461 aa	Predicted RBP	4.4	□□□□□ -1.7
PRP28	YDR243C	GAL83	Q04739	417 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	CIA1	Q05583	330 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	PHO92	Q06390	306 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	TDA5	Q06417	326 aa	Known RBP	4.4	□□□□□ -1.7
PRP28	YDR243C	ESA1	Q08649	445 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	SNX3	Q08826	162 aa	Known RBP	4.4	□□□□□ -1.7
PRP28	YDR243C	FLC1	Q08967	793 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	YOL107W	Q12239	342 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	LDB17	Q12342	491 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	MPD2	Q99316	277 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	DNF3	Q12674	1656 aa		4.4	□□□□□ -1.7
PRP28	YDR243C	INO1	P11986	533 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	ENA1	P13587	1091 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	RNA15	P25299	296 aa	Predicted RBP	4.4	□□□□□ -1.71
PRP28	YDR243C	NDI1	P32340	513 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	NUP2	P32499	720 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	MSS1	P32559	526 aa	Predicted RBP	4.4	□□□□□ -1.71
PRP28	YDR243C	RPC25	P35718	212 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	CBT1	P36038	271 aa	Predicted RBP	4.4	□□□□□ -1.71
PRP28	YDR243C	YKL077W	P36081	392 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	RPF2	P36160	344 aa	Known RBP	4.4	□□□□□ -1.71
PRP28	YDR243C	SPC97	P38863	823 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	YHR182W	P38870	785 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	PLB1	P39105	664 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	FLC2	P39719	783 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	ERV46	P39727	415 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	VAB2	P40003	282 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	PHM8	P40025	321 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	RFC2	P40348	353 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	MSS2	P40990	351 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	YJL043W	P47053	257 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	YJR056C	P47115	236 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	PMT5	P52867	743 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	NCS6	P53088	359 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	VPS62	P53285	467 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	PRM1	P53835	661 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	ENA2	Q01896	1091 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	RLI1	Q03195	608 aa	Known RBP	4.4	□□□□□ -1.71
PRP28	YDR243C	EBS1	Q03466	884 aa	Known RBP	4.4	□□□□□ -1.71
PRP28	YDR243C	RSN1	Q03516	953 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	YDR387C	Q04162	555 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	YDL086W	Q07505	273 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	FMP45	Q07651	309 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	NGL1	Q08213	363 aa	Known RBP	4.4	□□□□□ -1.71
PRP28	YDR243C	LYS21	Q12122	440 aa	Known RBP	4.4	□□□□□ -1.71
PRP28	YDR243C	PNS1	Q12412	539 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	ENA5	Q12691	1091 aa		4.4	□□□□□ -1.71
PRP28	YDR243C	BCK1	Q01389	1478 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	MET17	P06106	444 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	PET9	P18239	318 aa	Known RBP	4.39	□□□□□ -1.71
PRP28	YDR243C	EXO70	P19658	623 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	MSN1	P22148	382 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	PPH22	P23595	377 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	CTR86	P25355	563 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	SED4	P25365	1065 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	SBA1	P28707	216 aa	Known RBP	4.39	□□□□□ -1.71
PRP28	YDR243C	HEM3	P28789	327 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	THI4	P32318	326 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	SCM4	P32564	187 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	GSP1	P32835	219 aa	Known RBP	4.39	□□□□□ -1.71
PRP28	YDR243C	GSP2	P32836	220 aa	Known RBP	4.39	□□□□□ -1.71
PRP28	YDR243C	NOP4	P37838	685 aa	Known RBP	4.39	□□□□□ -1.71
PRP28	YDR243C	MAL32	P38158	584 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	YHR078W	P38799	552 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	MMF1	P40185	145 aa	Known RBP	4.39	□□□□□ -1.71
PRP28	YDR243C	NDE1	P40215	560 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	YRB2	P40517	327 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	VHR1	P40522	640 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	GSM1	P42950	618 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	ORC5	P50874	479 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	IMA1	P53051	589 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	DOC1	P53068	250 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	NMA2	P53204	395 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	MRPS35	P53292	345 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	MAL12	P53341	584 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	YTP1	P53584	459 aa		4.39	□□□□□ -1.71
PRP28	YDR243C	YNR062C	P53748	327 aa		4.39	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms