RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHR3	YDL212W	SEM1	O94742	89 aa		4.07	□□□□□ -1.76
SHR3	YDL212W	SUC2	P00724	532 aa		4.07	□□□□□ -1.76
SHR3	YDL212W	ROK1	P45818	564 aa	Predicted RBP	4.07	□□□□□ -1.76
SHR3	YDL212W	IMD4	P50094	524 aa	Known RBP	4.07	□□□□□ -1.76
SHR3	YDL212W	YNK1	P36010	153 aa	Known RBP	4.06	□□□□□ -1.76
SHR3	YDL212W	AVT5	P38176	459 aa		4.06	□□□□□ -1.76
SHR3	YDL212W	NOP16	P40007	231 aa	Known RBP	4.06	□□□□□ -1.76
SHR3	YDL212W	YDL009C	Q12210	107 aa		4.06	□□□□□ -1.76
SHR3	YDL212W	RPL20A	P0CX23	172 aa	Known RBP	4.05	□□□□□ -1.76
SHR3	YDL212W	RPL20B	P0CX24	172 aa	Predicted RBP	4.05	□□□□□ -1.76
SHR3	YDL212W	YCR007C	P25354	239 aa		4.05	□□□□□ -1.76
SHR3	YDL212W	PCA1	P38360	1216 aa		4.05	□□□□□ -1.76
SHR3	YDL212W	TIF4631	P39935	952 aa	Known RBP	4.05	□□□□□ -1.76
SHR3	YDL212W	MRX6	P48564	524 aa		4.05	□□□□□ -1.76
SHR3	YDL212W	CAR1	P00812	333 aa	Known RBP	4.04	□□□□□ -1.76
SHR3	YDL212W	SUI2	P20459	304 aa	Known RBP	4.04	□□□□□ -1.76
SHR3	YDL212W	MSN2	P33748	704 aa		4.04	□□□□□ -1.76
SHR3	YDL212W	SEF1	P34228	1148 aa		4.04	□□□□□ -1.76
SHR3	YDL212W	ALG5	P40350	334 aa		4.04	□□□□□ -1.76
SHR3	YDL212W	BOR1	P53838	576 aa		4.04	□□□□□ -1.76
SHR3	YDL212W	IVY1	Q04934	453 aa		4.04	□□□□□ -1.76
SHR3	YDL212W	PHO92	Q06390	306 aa		4.04	□□□□□ -1.76
SHR3	YDL212W	YLL056C	Q12177	298 aa		4.04	□□□□□ -1.76
SHR3	YDL212W	RLM1	Q12224	676 aa		4.04	□□□□□ -1.76
SHR3	YDL212W	CYB2	P00175	591 aa		4.03	□□□□□ -1.76
SHR3	YDL212W	SEC53	P07283	254 aa	Known RBP	4.03	□□□□□ -1.76
SHR3	YDL212W	OLE1	P21147	510 aa	Known RBP	4.03	□□□□□ -1.76
SHR3	YDL212W	PMU1	P36069	295 aa		4.03	□□□□□ -1.76
SHR3	YDL212W	TCD2	P36101	447 aa	Known RBP	4.03	□□□□□ -1.76
SHR3	YDL212W	TCM62	P38228	572 aa	Known RBP	4.03	□□□□□ -1.76
SHR3	YDL212W	TIF5	P38431	405 aa	Known RBP	4.03	□□□□□ -1.76
SHR3	YDL212W	KEL1	P38853	1164 aa	Known RBP	4.03	□□□□□ -1.76
SHR3	YDL212W	HAT2	P39984	401 aa		4.03	□□□□□ -1.76
SHR3	YDL212W	MRPL51	Q06090	140 aa	Predicted RBP	4.03	□□□□□ -1.76
SHR3	YDL212W	THP1	Q08231	455 aa		4.03	□□□□□ -1.76
SHR3	YDL212W	ENT1	Q12518	454 aa		4.03	□□□□□ -1.76
SHR3	YDL212W	RNA14	P25298	677 aa	Known RBP	4.02	□□□□□ -1.77
SHR3	YDL212W	UTR4	P32626	227 aa		4.02	□□□□□ -1.77
SHR3	YDL212W	SHP1	P34223	423 aa		4.02	□□□□□ -1.77
SHR3	YDL212W	YBR139W	P38109	508 aa		4.02	□□□□□ -1.77
SHR3	YDL212W	DUG2	P38149	878 aa		4.02	□□□□□ -1.77
SHR3	YDL212W	NPR2	P39923	615 aa		4.02	□□□□□ -1.77
SHR3	YDL212W	VID30	P53076	958 aa		4.02	□□□□□ -1.77
SHR3	YDL212W	TOF2	Q02208	771 aa		4.02	□□□□□ -1.77
SHR3	YDL212W	CTI6	Q08923	506 aa		4.02	□□□□□ -1.77
SHR3	YDL212W	RSA1	Q08932	381 aa		4.02	□□□□□ -1.77
SHR3	YDL212W	BNA4	P38169	460 aa		4.01	□□□□□ -1.77
SHR3	YDL212W	SDS24	P38314	527 aa		4.01	□□□□□ -1.77
SHR3	YDL212W	MSR1	P38714	643 aa		4.01	□□□□□ -1.77
SHR3	YDL212W	SHO1	P40073	367 aa		4.01	□□□□□ -1.77
SHR3	YDL212W	ALK1	P43633	760 aa	Known RBP	4.01	□□□□□ -1.77
SHR3	YDL212W	WSC2	P53832	503 aa		4.01	□□□□□ -1.77
SHR3	YDL212W	HEF3	P53978	1044 aa	Known RBP	4.01	□□□□□ -1.77
SHR3	YDL212W	RKM5	Q12367	367 aa		4.01	□□□□□ -1.77
SHR3	YDL212W	YJR112W-A	Q3E743	109 aa		4.01	□□□□□ -1.77
SHR3	YDL212W	CBS2	P14905	389 aa		4	□□□□□ -1.77
SHR3	YDL212W	PUT3	P25502	979 aa	Predicted RBP	4	□□□□□ -1.77
SHR3	YDL212W	WBP1	P33767	430 aa	Known RBP	4	□□□□□ -1.77
SHR3	YDL212W	SRO77	P38163	1010 aa		4	□□□□□ -1.77
SHR3	YDL212W	VPS75	P53853	264 aa		4	□□□□□ -1.77
SHR3	YDL212W	RCN2	Q12044	265 aa		4	□□□□□ -1.77
SHR3	YDL212W	CFT2	Q12102	859 aa	Predicted RBP	4	□□□□□ -1.77
SHR3	YDL212W	YCL021W-A	Q96VH3	125 aa		4	□□□□□ -1.77
SHR3	YDL212W	GAL80	P04387	435 aa		3.99	□□□□□ -1.77
SHR3	YDL212W	ATR1	P13090	542 aa		3.99	□□□□□ -1.77
SHR3	YDL212W	CBS1	P14066	229 aa		3.99	□□□□□ -1.77
SHR3	YDL212W	PRP2	P20095	876 aa	Predicted RBP	3.99	□□□□□ -1.77
SHR3	YDL212W	PRD1	P25375	712 aa		3.99	□□□□□ -1.77
SHR3	YDL212W	TUL1	P36096	758 aa		3.99	□□□□□ -1.77
SHR3	YDL212W	MUM2	P38236	366 aa		3.99	□□□□□ -1.77
SHR3	YDL212W	ALG8	P40351	577 aa		3.99	□□□□□ -1.77
SHR3	YDL212W	IDP2	P41939	412 aa		3.99	□□□□□ -1.77
SHR3	YDL212W	ARE2	P53629	642 aa	Known RBP	3.99	□□□□□ -1.77
SHR3	YDL212W	IRC15	Q02733	499 aa		3.99	□□□□□ -1.77
SHR3	YDL212W	RBS1	Q05672	457 aa	Known RBP	3.99	□□□□□ -1.77
SHR3	YDL212W	KEL3	Q08979	651 aa	Predicted RBP	3.99	□□□□□ -1.77
SHR3	YDL212W	LSP1	Q12230	341 aa	Known RBP	3.99	□□□□□ -1.77
SHR3	YDL212W	CTF3	Q12748	733 aa		3.99	□□□□□ -1.77
SHR3	YDL212W	MES1	P00958	751 aa	Known RBP	3.98	□□□□□ -1.77
SHR3	YDL212W	COR1	P07256	457 aa		3.98	□□□□□ -1.77
SHR3	YDL212W	MET8	P15807	274 aa		3.98	□□□□□ -1.77
SHR3	YDL212W	REG2	P38232	338 aa		3.98	□□□□□ -1.77
SHR3	YDL212W	SPG5	P42933	373 aa		3.98	□□□□□ -1.77
SHR3	YDL212W	GWT1	P47026	490 aa		3.98	□□□□□ -1.77
SHR3	YDL212W	ZPR1	P53303	486 aa	Known RBP	3.98	□□□□□ -1.77
SHR3	YDL212W	GPI1	P53306	609 aa		3.98	□□□□□ -1.77
SHR3	YDL212W	ARK1	P53974	638 aa		3.98	□□□□□ -1.77
SHR3	YDL212W	VPS38	Q05919	439 aa		3.98	□□□□□ -1.77
SHR3	YDL212W	ATP11	P32453	318 aa		3.97	□□□□□ -1.77
SHR3	YDL212W	NOP4	P37838	685 aa	Known RBP	3.97	□□□□□ -1.77
SHR3	YDL212W	YJL132W	P47014	750 aa		3.97	□□□□□ -1.77
SHR3	YDL212W	FIN1	Q03898	291 aa		3.97	□□□□□ -1.77
SHR3	YDL212W	VPS74	Q06385	345 aa		3.97	□□□□□ -1.77
SHR3	YDL212W	AVL9	Q12500	764 aa		3.97	□□□□□ -1.77
SHR3	YDL212W	GLK1	P17709	500 aa	Known RBP	3.96	□□□□□ -1.78
SHR3	YDL212W	PEP3	P27801	918 aa		3.96	□□□□□ -1.78
SHR3	YDL212W	YEL057C	P39983	233 aa		3.96	□□□□□ -1.78
SHR3	YDL212W	TMA108	P40462	946 aa		3.96	□□□□□ -1.78
SHR3	YDL212W	YPI1	P43587	155 aa		3.96	□□□□□ -1.78
SHR3	YDL212W	PET130	P47065	347 aa		3.96	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 91.1 ms