RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C ORC6P38826 435 aa5.4□□□□□ -1.54
VPS1YKR001C PCF11P39081 626 aaPredicted RBP5.4□□□□□ -1.54
VPS1YKR001C SOP4P39543 234 aaPredicted RBP5.4□□□□□ -1.54
VPS1YKR001C GDI1P39958 451 aaKnown RBP5.4□□□□□ -1.54
VPS1YKR001C IDS2P46958 469 aa5.4□□□□□ -1.54
VPS1YKR001C PSP1P50896 841 aaKnown RBP5.4□□□□□ -1.54
VPS1YKR001C RRN9P53437 365 aa5.4□□□□□ -1.54
VPS1YKR001C SSU72P53538 206 aaPredicted RBP5.4□□□□□ -1.54
VPS1YKR001C BIO5P53744 561 aaKnown RBP5.4□□□□□ -1.54
VPS1YKR001C NAF1P53919 492 aaKnown RBP5.4□□□□□ -1.54
VPS1YKR001C SKI8Q02793 397 aaPredicted RBP5.4□□□□□ -1.54
VPS1YKR001C ELP3Q02908 557 aaKnown RBP5.4□□□□□ -1.54
VPS1YKR001C GTB1Q04924 702 aa5.4□□□□□ -1.54
VPS1YKR001C EST2Q06163 884 aa5.4□□□□□ -1.54
VPS1YKR001C PUS9Q12069 462 aa5.4□□□□□ -1.54
VPS1YKR001C NCA2Q12374 616 aa5.4□□□□□ -1.54
VPS1YKR001C YBL029C-AQ3E756 94 aa5.4□□□□□ -1.54
VPS1YKR001C VPS34P22543 875 aa5.39□□□□□ -1.55
VPS1YKR001C CMK1P27466 446 aaKnown RBP5.39□□□□□ -1.55
VPS1YKR001C MKS1P34072 584 aa5.39□□□□□ -1.55
VPS1YKR001C YHL041WP38730 149 aa5.39□□□□□ -1.55
VPS1YKR001C YHL026CP38740 315 aa5.39□□□□□ -1.55
VPS1YKR001C PAC1P39946 494 aaKnown RBP5.39□□□□□ -1.55
VPS1YKR001C AVT6P40074 448 aa5.39□□□□□ -1.55
VPS1YKR001C LSM5P40089 93 aaKnown RBP5.39□□□□□ -1.55
VPS1YKR001C SOK1P40317 901 aa5.39□□□□□ -1.55
VPS1YKR001C IBA57P47158 497 aa5.39□□□□□ -1.55
VPS1YKR001C ROM1P53046 1155 aa5.39□□□□□ -1.55
VPS1YKR001C PBP1P53297 722 aaKnown RBP5.39□□□□□ -1.55
VPS1YKR001C YNL134CP53912 376 aaKnown RBP5.39□□□□□ -1.55
VPS1YKR001C SMA1Q02651 245 aa5.39□□□□□ -1.55
VPS1YKR001C YDR239CQ03780 787 aa5.39□□□□□ -1.55
VPS1YKR001C FMP42Q04991 504 aa5.39□□□□□ -1.55
VPS1YKR001C NKP2Q06162 153 aa5.39□□□□□ -1.55
VPS1YKR001C YLR173WQ06247 608 aa5.39□□□□□ -1.55
VPS1YKR001C YLL032CQ07834 825 aaKnown RBP RIP-Chip data5.39□□□□□ -1.55not detected
VPS1YKR001C SDO1Q07953 250 aaKnown RBP5.39□□□□□ -1.55
VPS1YKR001C YAP7Q08182 245 aa5.39□□□□□ -1.55
VPS1YKR001C REX4Q08237 289 aa5.39□□□□□ -1.55
VPS1YKR001C BDS1Q08347 646 aa5.39□□□□□ -1.55
VPS1YKR001C LDB17Q12342 491 aa5.39□□□□□ -1.55
VPS1YKR001C PCD1Q12524 340 aa5.39□□□□□ -1.55
VPS1YKR001C RAD1P06777 1100 aa5.39□□□□□ -1.55
VPS1YKR001C RAD7P06779 565 aa5.39□□□□□ -1.55
VPS1YKR001C CUP1-1P0CX80 61 aa5.39□□□□□ -1.55
VPS1YKR001C CUP1-2P0CX81 61 aa5.39□□□□□ -1.55
VPS1YKR001C CLN2P20438 545 aa5.39□□□□□ -1.55
VPS1YKR001C PUP3P25451 205 aaKnown RBP5.39□□□□□ -1.55
VPS1YKR001C GID7P25569 745 aa5.39□□□□□ -1.55
VPS1YKR001C PRR1P28708 518 aa5.39□□□□□ -1.55
VPS1YKR001C SCO2P38072 301 aa5.39□□□□□ -1.55
VPS1YKR001C EDS1P38073 919 aa5.39□□□□□ -1.55
VPS1YKR001C KTR4P38131 464 aa5.39□□□□□ -1.55
VPS1YKR001C UBX7P38349 436 aa5.39□□□□□ -1.55
VPS1YKR001C FMO1P38866 432 aa5.39□□□□□ -1.55
VPS1YKR001C REV7P38927 245 aa5.39□□□□□ -1.55
VPS1YKR001C YER010CP40011 234 aa5.39□□□□□ -1.55
VPS1YKR001C NPA3P47122 385 aa5.39□□□□□ -1.55
VPS1YKR001C PMT3P47190 753 aa5.39□□□□□ -1.55
VPS1YKR001C ALT2P52892 507 aa5.39□□□□□ -1.55
VPS1YKR001C DAM1P53267 343 aa5.39□□□□□ -1.55
VPS1YKR001C SNX41Q04053 625 aa5.39□□□□□ -1.55
VPS1YKR001C HRQ1Q05549 1077 aa5.39□□□□□ -1.55
VPS1YKR001C YOR223WQ12015 292 aa5.39□□□□□ -1.55
VPS1YKR001C PAA1Q12447 191 aaKnown RBP5.39□□□□□ -1.55
VPS1YKR001C ATP6P00854 259 aa5.38□□□□□ -1.55
VPS1YKR001C CMD1P06787 147 aaKnown RBP5.38□□□□□ -1.55
VPS1YKR001C GAL7P08431 366 aa5.38□□□□□ -1.55
VPS1YKR001C CDC24P11433 854 aaPredicted RBP5.38□□□□□ -1.55
VPS1YKR001C FBA1P14540 359 aaKnown RBP5.38□□□□□ -1.55
VPS1YKR001C PDC5P16467 563 aaKnown RBP5.38□□□□□ -1.55
VPS1YKR001C CDC23P16522 626 aa5.38□□□□□ -1.55
VPS1YKR001C ATP7P30902 174 aa5.38□□□□□ -1.55
VPS1YKR001C GSH1P32477 678 aa5.38□□□□□ -1.55
VPS1YKR001C ARP1P38696 384 aa5.38□□□□□ -1.55
VPS1YKR001C QNS1P38795 714 aaKnown RBP5.38□□□□□ -1.55
VPS1YKR001C PEX28P38848 579 aa5.38□□□□□ -1.55
VPS1YKR001C YHR202WP38887 602 aa5.38□□□□□ -1.55
VPS1YKR001C TIF11P38912 153 aaKnown RBP5.38□□□□□ -1.55
VPS1YKR001C FHL1P39521 936 aa5.38□□□□□ -1.55
VPS1YKR001C YAT2P40017 923 aa5.38□□□□□ -1.55
VPS1YKR001C MRX1P40050 688 aa5.38□□□□□ -1.55
VPS1YKR001C GPP2P40106 250 aaKnown RBP5.38□□□□□ -1.55
VPS1YKR001C ASK10P48361 1146 aa5.38□□□□□ -1.55
VPS1YKR001C COQ6P53318 479 aa5.38□□□□□ -1.55
VPS1YKR001C BOP3P53958 396 aa5.38□□□□□ -1.55
VPS1YKR001C NOG1Q02892 647 aaKnown RBP5.38□□□□□ -1.55
VPS1YKR001C MMT1Q03218 510 aa5.38□□□□□ -1.55
VPS1YKR001C YDR344CQ05510 147 aa5.38□□□□□ -1.55
VPS1YKR001C THI7Q05998 598 aa5.38□□□□□ -1.55
VPS1YKR001C UTP21Q06078 939 aaPredicted RBP5.38□□□□□ -1.55
VPS1YKR001C YDL129WQ07555 291 aa5.38□□□□□ -1.55
VPS1YKR001C NSE1Q07913 336 aa5.38□□□□□ -1.55
VPS1YKR001C NBA1Q08229 501 aaKnown RBP5.38□□□□□ -1.55
VPS1YKR001C YPL272CQ08984 517 aa5.38□□□□□ -1.55
VPS1YKR001C VAM3Q12241 283 aa5.38□□□□□ -1.55
VPS1YKR001C PSY3Q12318 242 aa5.38□□□□□ -1.55
VPS1YKR001C NSI1Q12457 570 aa5.38□□□□□ -1.55
VPS1YKR001C RRD2Q12461 358 aa5.38□□□□□ -1.55
VPS1YKR001C PFK27Q12471 397 aaPredicted RBP5.38□□□□□ -1.55
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms