RNA–Protein interactions for RNA: YJR028W

YJR028W, Transcript of Retrotransposon TYA Gag gene co-transcribed with TYB Pol, yeast

Gene YJR028W, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YJR028W	YJR028W	ATP23	P53722	227 aa		4.58	□□□□□ -1.68
YJR028W	YJR028W	CIK1	Q01649	594 aa		4.58	□□□□□ -1.68
YJR028W	YJR028W	CAC2	Q04199	468 aa		4.58	□□□□□ -1.68
YJR028W	YJR028W	FMP45	Q07651	309 aa		4.58	□□□□□ -1.68
YJR028W	YJR028W	RPL31B	P0C2H9	113 aa	Known RBP	4.57	□□□□□ -1.68
YJR028W	YJR028W	OPI1	P21957	404 aa		4.57	□□□□□ -1.68
YJR028W	YJR028W	CNA1	P23287	553 aa		4.57	□□□□□ -1.68
YJR028W	YJR028W	IDH2	P28241	369 aa	Known RBP	4.57	□□□□□ -1.68
YJR028W	YJR028W	PHO90	P39535	881 aa		4.57	□□□□□ -1.68
YJR028W	YJR028W	JEM1	P40358	645 aa		4.57	□□□□□ -1.68
YJR028W	YJR028W	NET1	P47035	1189 aa		4.57	□□□□□ -1.68
YJR028W	YJR028W	UBP8	P50102	471 aa		4.57	□□□□□ -1.68
YJR028W	YJR028W	TOF2	Q02208	771 aa		4.57	□□□□□ -1.68
YJR028W	YJR028W	RSC9	Q03124	581 aa		4.57	□□□□□ -1.68
YJR028W	YJR028W	SNF3	P10870	884 aa		4.56	□□□□□ -1.68
YJR028W	YJR028W	RPL3	P14126	387 aa	Known RBP	4.56	□□□□□ -1.68
YJR028W	YJR028W	REC107	P21651	314 aa		4.56	□□□□□ -1.68
YJR028W	YJR028W	CPR2	P23285	205 aa		4.56	□□□□□ -1.68
YJR028W	YJR028W	COQ3	P27680	312 aa		4.56	□□□□□ -1.68
YJR028W	YJR028W	THI2	P38141	450 aa		4.56	□□□□□ -1.68
YJR028W	YJR028W	RFC1	P38630	861 aa	Known RBP	4.56	□□□□□ -1.68
YJR028W	YJR028W	KEL1	P38853	1164 aa	Known RBP	4.56	□□□□□ -1.68
YJR028W	YJR028W	ZIM17	P42844	174 aa		4.56	□□□□□ -1.68
YJR028W	YJR028W	ATG27	P46989	271 aa		4.56	□□□□□ -1.68
YJR028W	YJR028W	CAF130	P53280	1122 aa	Predicted RBP	4.56	□□□□□ -1.68
YJR028W	YJR028W	IDP3	P53982	420 aa	Known RBP	4.56	□□□□□ -1.68
YJR028W	YJR028W	ERO1	Q03103	563 aa		4.56	□□□□□ -1.68
YJR028W	YJR028W	YOR365C	Q08844	703 aa		4.56	□□□□□ -1.68
YJR028W	YJR028W	RRI1	Q12468	440 aa		4.56	□□□□□ -1.68
YJR028W	YJR028W	AFI1	Q99222	893 aa		4.56	□□□□□ -1.68
YJR028W	YJR028W	YMR085W	P0CF18	432 aa		4.55	□□□□□ -1.68
YJR028W	YJR028W	NAT1	P12945	854 aa	Known RBP	4.55	□□□□□ -1.68
YJR028W	YJR028W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	4.55	□□□□□ -1.68	not detected
YJR028W	YJR028W	TUL1	P36096	758 aa		4.55	□□□□□ -1.68
YJR028W	YJR028W	PIM1	P36775	1133 aa		4.55	□□□□□ -1.68
YJR028W	YJR028W	YHR210C	P38893	341 aa		4.55	□□□□□ -1.68
YJR028W	YJR028W	YMR147W	P40218	223 aa	Known RBP	4.55	□□□□□ -1.68
YJR028W	YJR028W	PKP2	P53170	491 aa		4.55	□□□□□ -1.68
YJR028W	YJR028W	ART5	P53244	586 aa	Known RBP	4.55	□□□□□ -1.68
YJR028W	YJR028W	YGR126W	P53274	230 aa		4.55	□□□□□ -1.68
YJR028W	YJR028W	KAP120	Q02932	1032 aa		4.55	□□□□□ -1.68
YJR028W	YJR028W	ARP10	Q04549	284 aa		4.55	□□□□□ -1.68
YJR028W	YJR028W	IRC3	Q06683	689 aa		4.55	□□□□□ -1.68
YJR028W	YJR028W	CDC45	Q08032	650 aa		4.55	□□□□□ -1.68
YJR028W	YJR028W	YML133C	Q03099	1374 aa		4.55	□□□□□ -1.68
YJR028W	YJR028W	YLL067C	Q07888	1374 aa		4.55	□□□□□ -1.68
YJR028W	YJR028W	YLL066C	Q99208	1374 aa		4.55	□□□□□ -1.68
YJR028W	YJR028W	HOM2	P13663	365 aa	Known RBP	4.54	□□□□□ -1.68
YJR028W	YJR028W	URE2	P23202	354 aa	Known RBP	4.54	□□□□□ -1.68
YJR028W	YJR028W	SGV1	P23293	657 aa	Known RBP	4.54	□□□□□ -1.68
YJR028W	YJR028W	PPH22	P23595	377 aa		4.54	□□□□□ -1.68
YJR028W	YJR028W	YME2	P32843	850 aa		4.54	□□□□□ -1.68
YJR028W	YJR028W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected
YJR028W	YJR028W	ALK1	P43633	760 aa	Known RBP	4.54	□□□□□ -1.68
YJR028W	YJR028W	COP1	P53622	1201 aa	Known RBP	4.54	□□□□□ -1.68
YJR028W	YJR028W	OAZ1	Q02803	292 aa		4.54	□□□□□ -1.68
YJR028W	YJR028W	PDH1	Q12428	516 aa	Known RBP	4.54	□□□□□ -1.68
YJR028W	YJR028W	RRD2	Q12461	358 aa		4.54	□□□□□ -1.68
YJR028W	YJR028W	PAR32	Q12515	295 aa	Known RBP	4.54	□□□□□ -1.68
YJR028W	YJR028W	COR1	P07256	457 aa		4.53	□□□□□ -1.68
YJR028W	YJR028W	SPB1	P25582	841 aa	Predicted RBP	4.53	□□□□□ -1.68
YJR028W	YJR028W	SHP1	P34223	423 aa		4.53	□□□□□ -1.68
YJR028W	YJR028W	HCS1	P34243	683 aa		4.53	□□□□□ -1.68
YJR028W	YJR028W	TOM71	P38825	639 aa	Known RBP	4.53	□□□□□ -1.68
YJR028W	YJR028W	MBB1	P39534	108 aa		4.53	□□□□□ -1.68
YJR028W	YJR028W	CAK1	P43568	368 aa	Predicted RBP	4.53	□□□□□ -1.68
YJR028W	YJR028W	MNP1	P53163	194 aa	Predicted RBP	4.53	□□□□□ -1.68
YJR028W	YJR028W	HEF3	P53978	1044 aa	Known RBP	4.53	□□□□□ -1.68
YJR028W	YJR028W	DON1	Q05610	365 aa		4.53	□□□□□ -1.68
YJR028W	YJR028W	PGK1	P00560	416 aa	Known RBP	4.52	□□□□□ -1.69
YJR028W	YJR028W	YPT1	P01123	206 aa	Known RBP	4.52	□□□□□ -1.69
YJR028W	YJR028W	MNE1	P24720	663 aa		4.52	□□□□□ -1.69
YJR028W	YJR028W	YIM1	P28625	365 aa		4.52	□□□□□ -1.69
YJR028W	YJR028W	DPH2	P32461	534 aa		4.52	□□□□□ -1.69
YJR028W	YJR028W	APE3	P37302	537 aa	Known RBP	4.52	□□□□□ -1.69
YJR028W	YJR028W	RXT2	P38255	430 aa		4.52	□□□□□ -1.69
YJR028W	YJR028W	RRT2	P38332	387 aa		4.52	□□□□□ -1.69
YJR028W	YJR028W	TIF4631	P39935	952 aa	Known RBP	4.52	□□□□□ -1.69
YJR028W	YJR028W	LCB2	P40970	561 aa		4.52	□□□□□ -1.69
YJR028W	YJR028W	SNG1	P46950	547 aa		4.52	□□□□□ -1.69
YJR028W	YJR028W	YGL108C	P53139	140 aa		4.52	□□□□□ -1.69
YJR028W	YJR028W	SOL4	P53315	255 aa		4.52	□□□□□ -1.69
YJR028W	YJR028W	BUD32	P53323	261 aa		4.52	□□□□□ -1.69
YJR028W	YJR028W	OGG1	P53397	376 aa	Predicted RBP	4.52	□□□□□ -1.69
YJR028W	YJR028W	YVH1	Q02256	364 aa	Known RBP	4.52	□□□□□ -1.69
YJR028W	YJR028W	VTC3	Q02725	835 aa		4.52	□□□□□ -1.69
YJR028W	YJR028W	YDL057W	Q07379	328 aa		4.52	□□□□□ -1.69
YJR028W	YJR028W	SIL1	Q08199	421 aa		4.52	□□□□□ -1.69
YJR028W	YJR028W	SUC2	P00724	532 aa		4.51	□□□□□ -1.69
YJR028W	YJR028W	ERG11	P10614	530 aa		4.51	□□□□□ -1.69
YJR028W	YJR028W	RRP7	P25368	297 aa	Predicted RBP	4.51	□□□□□ -1.69
YJR028W	YJR028W	RPS2	P25443	254 aa	Known RBP	4.51	□□□□□ -1.69
YJR028W	YJR028W	GEX1	P25596	615 aa		4.51	□□□□□ -1.69
YJR028W	YJR028W	RAD14	P28519	371 aa		4.51	□□□□□ -1.69
YJR028W	YJR028W	PUP2	P32379	260 aa		4.51	□□□□□ -1.69
YJR028W	YJR028W	MDL1	P33310	695 aa		4.51	□□□□□ -1.69
YJR028W	YJR028W	TCM62	P38228	572 aa	Known RBP	4.51	□□□□□ -1.69
YJR028W	YJR028W	LAG1	P38703	411 aa		4.51	□□□□□ -1.69
YJR028W	YJR028W	CFD1	P40558	293 aa		4.51	□□□□□ -1.69
YJR028W	YJR028W	SNO3	P43544	222 aa		4.51	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 22.2 ms