RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	ASI1	P54074	624 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	ECM22	Q05958	814 aa	Predicted RBP	2.33	□□□□□ -2.04
NCL1	YBL024W	PIG1	Q06216	648 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	GRC3	Q07845	632 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	MCH4	Q08268	501 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	FRE3	Q08905	711 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	PFA4	Q12006	378 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	ILS1	P09436	1072 aa	Known RBP	2.32	□□□□□ -2.04
NCL1	YBL024W	ART10	P18634	518 aa	Known RBP	2.32	□□□□□ -2.04
NCL1	YBL024W	CLB2	P24869	491 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	SAC1	P32368	623 aa	Known RBP	2.32	□□□□□ -2.04
NCL1	YBL024W	MRE11	P32829	692 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	PMT1	P33775	817 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	YBL055C	P34220	418 aa	Predicted RBP	2.32	□□□□□ -2.04
NCL1	YBL024W	ARN1	P38731	627 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	VPS41	P38959	992 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	EAF7	P53911	425 aa	Known RBP	2.32	□□□□□ -2.04
NCL1	YBL024W	BOP3	P53958	396 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	ERG13	P54839	491 aa	Known RBP	2.32	□□□□□ -2.04
NCL1	YBL024W	MSC1	Q03104	513 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	YMR178W	Q03219	274 aa	Known RBP	2.32	□□□□□ -2.04
NCL1	YBL024W	YLR345W	Q06137	509 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	ATG29	Q12092	213 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	GAL4	P04386	881 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	SPE2	P21182	396 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	ELO2	P25358	347 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	ADK2	P26364	225 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	MUM2	P38236	366 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	SNO3	P43544	222 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	PTR3	P43606	678 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	IRC7	P43623	340 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	TWF1	P53250	332 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	YGR127W	P53275	312 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	COQ9	Q05779	260 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	ADE13	Q05911	482 aa	Known RBP	2.32	□□□□□ -2.04
NCL1	YBL024W	APL4	Q12028	832 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	ISN1	Q99312	450 aa		2.32	□□□□□ -2.04
NCL1	YBL024W	YMR085W	P0CF18	432 aa		2.31	□□□□□ -2.04
NCL1	YBL024W	PRD1	P25375	712 aa		2.31	□□□□□ -2.04
NCL1	YBL024W	DBF4	P32325	704 aa		2.31	□□□□□ -2.04
NCL1	YBL024W	CMC1	P36064	111 aa		2.31	□□□□□ -2.04
NCL1	YBL024W	ICS2	P38284	255 aa		2.31	□□□□□ -2.04
NCL1	YBL024W	DBP8	P38719	431 aa		2.31	□□□□□ -2.04
NCL1	YBL024W	LYS20	P48570	428 aa	Known RBP	2.31	□□□□□ -2.04
NCL1	YBL024W	SGF73	P53165	657 aa		2.31	□□□□□ -2.04
NCL1	YBL024W	ERG26	P53199	349 aa	Known RBP	2.31	□□□□□ -2.04
NCL1	YBL024W	RPA49	Q01080	415 aa	Predicted RBP	2.31	□□□□□ -2.04
NCL1	YBL024W	FIN1	Q03898	291 aa		2.31	□□□□□ -2.04
NCL1	YBL024W	EMI2	Q04409	500 aa	Known RBP	2.31	□□□□□ -2.04
NCL1	YBL024W	RQC1	Q05468	723 aa	Known RBP	2.31	□□□□□ -2.04
NCL1	YBL024W	ECM30	Q06673	1274 aa		2.31	□□□□□ -2.04
NCL1	YBL024W	SMC6	Q12749	1114 aa		2.31	□□□□□ -2.04
NCL1	YBL024W	URE2	P23202	354 aa	Known RBP	2.3	□□□□□ -2.04
NCL1	YBL024W	CLB3	P24870	427 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	BUD5	P25300	642 aa	Predicted RBP	2.3	□□□□□ -2.04
NCL1	YBL024W	BOS1	P25385	244 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	SEC66	P33754	206 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	PXA2	P34230	853 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	MTR2	P34232	184 aa	Known RBP	2.3	□□□□□ -2.04
NCL1	YBL024W	GCS1	P35197	352 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	MIA40	P36046	403 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	STB6	P36085	766 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	RPL32	P38061	130 aa	Known RBP	2.3	□□□□□ -2.04
NCL1	YBL024W	SRP72	P38688	640 aa	Known RBP	2.3	□□□□□ -2.04
NCL1	YBL024W	MSR1	P38714	643 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	HXT9	P40885	567 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	YML6	P51998	286 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	BNI5	P53890	448 aa	Known RBP	2.3	□□□□□ -2.04
NCL1	YBL024W	YNL144C	P53907	740 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	MPS1	P54199	764 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	RSM23	Q01163	450 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	ARX1	Q03862	593 aa	Known RBP	2.3	□□□□□ -2.04
NCL1	YBL024W	RBS1	Q05672	457 aa	Known RBP	2.3	□□□□□ -2.04
NCL1	YBL024W	PUT2	P07275	575 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	PMS1	P14242	873 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	APE1	P14904	514 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	COQ3	P27680	312 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	YKL100C	P34248	587 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	RFC1	P38630	861 aa	Known RBP	2.3	□□□□□ -2.04
NCL1	YBL024W	YJL068C	P40363	299 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	YIL060W	P40519	144 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	HXT14	P42833	540 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	STB2	P46679	850 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	NMD5	P46970	1048 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	RSC9	Q03124	581 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	RMT2	Q03305	412 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	ERB1	Q04660	807 aa	Known RBP	2.3	□□□□□ -2.04
NCL1	YBL024W	ATG26	Q06321	1198 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	YLR352W	Q06479	807 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	ETT1	Q08421	412 aa	Known RBP	2.3	□□□□□ -2.04
NCL1	YBL024W	NCE102	Q12207	173 aa	RIP-Chip data	2.3	□□□□□ -2.04	not detected
NCL1	YBL024W	SEC39	Q12745	709 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	YRF1-4	O13559	1382 aa		2.3	□□□□□ -2.04
NCL1	YBL024W	ARG81	P05085	880 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	BUD14	P27637	709 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	HXT3	P32466	567 aa	Known RBP	2.29	□□□□□ -2.04
NCL1	YBL024W	ECM32	P32644	1121 aa	Known RBP	2.29	□□□□□ -2.04
NCL1	YBL024W	YME1	P32795	747 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	OTU2	P38747	307 aa	Known RBP	2.29	□□□□□ -2.04
NCL1	YBL024W	LRP1	P38801	184 aa	Known RBP	2.29	□□□□□ -2.04

Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms