RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	UIP3	P39547	235 aa		3.05	□□□□□ -1.92
VAR1	Q0140	VPS52	P39904	641 aa		3.05	□□□□□ -1.92
VAR1	Q0140	CSM2	P40465	213 aa		3.05	□□□□□ -1.92
VAR1	Q0140	PYK2	P52489	506 aa	Known RBP	3.05	□□□□□ -1.92
VAR1	Q0140	WSC2	P53832	503 aa		3.05	□□□□□ -1.92
VAR1	Q0140	MET14	Q02196	202 aa		3.05	□□□□□ -1.92
VAR1	Q0140	YVH1	Q02256	364 aa	Known RBP	3.05	□□□□□ -1.92
VAR1	Q0140	EMI2	Q04409	500 aa	Known RBP	3.05	□□□□□ -1.92
VAR1	Q0140	YOR387C	Q08910	206 aa		3.05	□□□□□ -1.92
VAR1	Q0140	PCD1	Q12524	340 aa		3.05	□□□□□ -1.92
VAR1	Q0140	PUT2	P07275	575 aa		3.04	□□□□□ -1.92
VAR1	Q0140	SPT15	P13393	240 aa	Known RBP	3.04	□□□□□ -1.92
VAR1	Q0140	PRS1	P32895	427 aa	Known RBP	3.04	□□□□□ -1.92
VAR1	Q0140	RPS10B	P46784	105 aa	Known RBP	3.04	□□□□□ -1.92
VAR1	Q0140	GLO2	Q05584	274 aa		3.04	□□□□□ -1.92
VAR1	Q0140	NKP1	Q12493	238 aa		3.04	□□□□□ -1.92
VAR1	Q0140	TMA7	Q3E764	64 aa	Known RBP	3.04	□□□□□ -1.92
VAR1	Q0140	VCX1	Q99385	411 aa		3.04	□□□□□ -1.92
VAR1	Q0140	CAR1	P00812	333 aa	Known RBP	3.03	□□□□□ -1.92
VAR1	Q0140	DEG1	P31115	442 aa	Known RBP	3.03	□□□□□ -1.92
VAR1	Q0140	SPR1	P32603	445 aa		3.03	□□□□□ -1.92
VAR1	Q0140	YME1	P32795	747 aa		3.03	□□□□□ -1.92
VAR1	Q0140	RFS1	P38234	210 aa	Known RBP	3.03	□□□□□ -1.92
VAR1	Q0140	IST3	P40565	148 aa	Predicted RBP	3.03	□□□□□ -1.92
VAR1	Q0140	TIS11	P47977	285 aa		3.03	□□□□□ -1.92
VAR1	Q0140	YNR061C	P53747	219 aa		3.03	□□□□□ -1.92
VAR1	Q0140	RHO4	Q00246	291 aa		3.03	□□□□□ -1.92
VAR1	Q0140	YPL014W	Q02606	381 aa		3.03	□□□□□ -1.92
VAR1	Q0140	YOR019W	Q99248	730 aa		3.03	□□□□□ -1.92
VAR1	Q0140	GAL1	P04385	528 aa		3.02	□□□□□ -1.93
VAR1	Q0140	ARG81	P05085	880 aa		3.02	□□□□□ -1.93
VAR1	Q0140	SSB1	P11484	613 aa	Known RBP	3.02	□□□□□ -1.93
VAR1	Q0140	YCR022C	P25620	114 aa		3.02	□□□□□ -1.93
VAR1	Q0140	NAM9	P27929	486 aa		3.02	□□□□□ -1.93
VAR1	Q0140	FUN19	P28003	413 aa	Predicted RBP	3.02	□□□□□ -1.93
VAR1	Q0140	SSB2	P40150	613 aa	Known RBP	3.02	□□□□□ -1.93
VAR1	Q0140	PSF2	P40359	213 aa		3.02	□□□□□ -1.93
VAR1	Q0140	RLI1	Q03195	608 aa	Known RBP	3.02	□□□□□ -1.93
VAR1	Q0140	ENT4	Q07872	247 aa		3.02	□□□□□ -1.93
VAR1	Q0140	AMD1	P15274	810 aa	Known RBP	3.01	□□□□□ -1.93
VAR1	Q0140	YIM1	P28625	365 aa		3.01	□□□□□ -1.93
VAR1	Q0140	TSC10	P38342	320 aa		3.01	□□□□□ -1.93
VAR1	Q0140	OSH3	P38713	996 aa	Known RBP	3.01	□□□□□ -1.93
VAR1	Q0140	DBP8	P38719	431 aa		3.01	□□□□□ -1.93
VAR1	Q0140	SHO1	P40073	367 aa		3.01	□□□□□ -1.93
VAR1	Q0140	YGR210C	P42942	411 aa		3.01	□□□□□ -1.93
VAR1	Q0140	SGM1	P47166	707 aa		3.01	□□□□□ -1.93
VAR1	Q0140	YLR152C	P54072	576 aa		3.01	□□□□□ -1.93
VAR1	Q0140	SYO1	Q07395	620 aa		3.01	□□□□□ -1.93
VAR1	Q0140	RPS10A	Q08745	105 aa	Predicted RBP	3.01	□□□□□ -1.93
VAR1	Q0140	APE1	P14904	514 aa		3	□□□□□ -1.93
VAR1	Q0140	PAD1	P33751	242 aa	Known RBP RIP-Chip data	3	□□□□□ -1.93	not detected
VAR1	Q0140	ALG8	P40351	577 aa		3	□□□□□ -1.93
VAR1	Q0140	PEX8	P53248	589 aa		3	□□□□□ -1.93
VAR1	Q0140	INN1	P53901	409 aa		3	□□□□□ -1.93
VAR1	Q0140	YDL009C	Q12210	107 aa		3	□□□□□ -1.93
VAR1	Q0140	ISY1	P21374	235 aa	Predicted RBP	2.99	□□□□□ -1.93
VAR1	Q0140	ERG8	P24521	451 aa		2.99	□□□□□ -1.93
VAR1	Q0140	PUT3	P25502	979 aa	Predicted RBP	2.99	□□□□□ -1.93
VAR1	Q0140	YCL049C	P25577	312 aa		2.99	□□□□□ -1.93
VAR1	Q0140	PTP2	P29461	750 aa		2.99	□□□□□ -1.93
VAR1	Q0140	YBL059W	P34224	193 aa		2.99	□□□□□ -1.93
VAR1	Q0140	DIA4	P38705	446 aa	Predicted RBP	2.99	□□□□□ -1.93
VAR1	Q0140	NDT80	P38830	627 aa		2.99	□□□□□ -1.93
VAR1	Q0140	SEC24	P40482	926 aa	Known RBP	2.99	□□□□□ -1.93
VAR1	Q0140	SMM1	P53720	384 aa	Known RBP	2.99	□□□□□ -1.93
VAR1	Q0140	YBR085C-A	O43137	85 aa		2.98	□□□□□ -1.93
VAR1	Q0140	CBF2	P32504	956 aa		2.98	□□□□□ -1.93
VAR1	Q0140	IME4	P41833	600 aa		2.98	□□□□□ -1.93
VAR1	Q0140	ERG26	P53199	349 aa	Known RBP	2.98	□□□□□ -1.93
VAR1	Q0140	REG1	Q00816	1014 aa		2.98	□□□□□ -1.93
VAR1	Q0140	PSK2	Q08217	1101 aa		2.98	□□□□□ -1.93
VAR1	Q0140	SDH5	Q08230	162 aa		2.98	□□□□□ -1.93
VAR1	Q0140	SUP35	P05453	685 aa	Known RBP	2.97	□□□□□ -1.93
VAR1	Q0140	RSM23	Q01163	450 aa		2.97	□□□□□ -1.93
VAR1	Q0140	BNA5	Q05979	453 aa		2.97	□□□□□ -1.93
VAR1	Q0140	ECM30	Q06673	1274 aa		2.97	□□□□□ -1.93
VAR1	Q0140	RRG7	Q08774	242 aa	Predicted RBP	2.97	□□□□□ -1.93
VAR1	Q0140	YDL012C	Q12489	107 aa		2.97	□□□□□ -1.93
VAR1	Q0140	CTF3	Q12748	733 aa		2.97	□□□□□ -1.93
VAR1	Q0140	NUC1	P08466	329 aa		2.96	□□□□□ -1.94
VAR1	Q0140	LPD1	P09624	499 aa	Known RBP	2.96	□□□□□ -1.94
VAR1	Q0140	RNA14	P25298	677 aa	Known RBP	2.96	□□□□□ -1.94
VAR1	Q0140	BUR6	P40096	142 aa		2.96	□□□□□ -1.94
VAR1	Q0140	VPS4	P52917	437 aa		2.96	□□□□□ -1.94
VAR1	Q0140	ELP3	Q02908	557 aa	Known RBP	2.96	□□□□□ -1.94
VAR1	Q0140	TMS1	Q12116	473 aa		2.96	□□□□□ -1.94
VAR1	Q0140	ERV2	Q12284	196 aa		2.96	□□□□□ -1.94
VAR1	Q0140	HRT3	Q12347	344 aa		2.96	□□□□□ -1.94
VAR1	Q0140	SGV1	P23293	657 aa	Known RBP	2.95	□□□□□ -1.94
VAR1	Q0140	RAD16	P31244	790 aa		2.95	□□□□□ -1.94
VAR1	Q0140	SWD3	P38123	315 aa		2.95	□□□□□ -1.94
VAR1	Q0140	YHL041W	P38730	149 aa		2.95	□□□□□ -1.94
VAR1	Q0140	ELO1	P39540	310 aa		2.95	□□□□□ -1.94
VAR1	Q0140	ARC35	P53731	342 aa	Known RBP	2.95	□□□□□ -1.94
VAR1	Q0140	INA17	Q02888	182 aa		2.95	□□□□□ -1.94
VAR1	Q0140	MRPL51	Q06090	140 aa	Predicted RBP	2.95	□□□□□ -1.94
VAR1	Q0140	NUS1	Q12063	375 aa		2.95	□□□□□ -1.94
VAR1	Q0140	HHF1	P02309	103 aa	Known RBP	2.94	□□□□□ -1.94
VAR1	Q0140	CPR1	P14832	162 aa	Known RBP	2.94	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 29.8 ms