RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C PHO81P17442 1178 aa1.69□□□□□ -2.14
VPS54YDR027C SWD1P39706 426 aa1.69□□□□□ -2.14
VPS54YDR027C YDR415CQ04033 374 aaPredicted RBP1.69□□□□□ -2.14
VPS54YDR027C MCP2Q06567 569 aa1.69□□□□□ -2.14
VPS54YDR027C RVB2Q12464 471 aaKnown RBP1.69□□□□□ -2.14
VPS54YDR027C YBR298C-AQ8TGK4 73 aa1.69□□□□□ -2.14
VPS54YDR027C REV1P12689 985 aa1.68□□□□□ -2.14
VPS54YDR027C PTH2P34222 208 aa1.68□□□□□ -2.14
VPS54YDR027C RIM2P38127 377 aa1.68□□□□□ -2.14
VPS54YDR027C APM3P38153 483 aa1.68□□□□□ -2.14
VPS54YDR027C ARC35P53731 342 aaKnown RBP1.68□□□□□ -2.14
VPS54YDR027C SMA1Q02651 245 aa1.68□□□□□ -2.14
VPS54YDR027C YPL108WQ02872 168 aaPredicted RBP1.68□□□□□ -2.14
VPS54YDR027C YML131WQ03102 365 aa1.68□□□□□ -2.14
VPS54YDR027C VPS72Q03388 795 aa1.68□□□□□ -2.14
VPS54YDR027C DAP1Q12091 152 aa1.68□□□□□ -2.14
VPS54YDR027C NKP1Q12493 238 aa1.68□□□□□ -2.14
VPS54YDR027C FKS3Q04952 1785 aa1.68□□□□□ -2.14
VPS54YDR027C MSM1P22438 575 aa1.68□□□□□ -2.14
VPS54YDR027C YPK3P38070 525 aa1.68□□□□□ -2.14
VPS54YDR027C VID27P40157 782 aa1.68□□□□□ -2.14
VPS54YDR027C YIL089WP40500 205 aa1.68□□□□□ -2.14
VPS54YDR027C YLR455WQ06188 304 aa1.68□□□□□ -2.14
VPS54YDR027C SWI4P25302 1093 aaKnown RBP1.67□□□□□ -2.14
VPS54YDR027C MSH1P25846 959 aa1.67□□□□□ -2.14
VPS54YDR027C PDR3P33200 976 aa1.67□□□□□ -2.14
VPS54YDR027C YBR138CP38277 524 aa1.67□□□□□ -2.14
VPS54YDR027C STT3P39007 718 aaKnown RBP1.67□□□□□ -2.14
VPS54YDR027C PHM8P40025 321 aa1.67□□□□□ -2.14
VPS54YDR027C YJR061WP40355 935 aa1.67□□□□□ -2.14
VPS54YDR027C PAP2P53632 584 aaKnown RBP1.67□□□□□ -2.14
VPS54YDR027C TRS130Q03660 1102 aa1.67□□□□□ -2.14
VPS54YDR027C GTB1Q04924 702 aa1.67□□□□□ -2.14
VPS54YDR027C RSF1Q05043 376 aa1.67□□□□□ -2.14
VPS54YDR027C SSP2Q08646 371 aa1.67□□□□□ -2.14
VPS54YDR027C PPT2Q12036 173 aa1.67□□□□□ -2.14
VPS54YDR027C BSC1Q12140 328 aa1.67□□□□□ -2.14
VPS54YDR027C PSK1P31374 1356 aa1.67□□□□□ -2.14
VPS54YDR027C NCP1P16603 691 aaKnown RBP1.67□□□□□ -2.14
VPS54YDR027C DPB3P27344 201 aa1.67□□□□□ -2.14
VPS54YDR027C LEU5P38702 357 aa1.67□□□□□ -2.14
VPS54YDR027C KRE9P39005 276 aa1.67□□□□□ -2.14
VPS54YDR027C VPS27P40343 622 aaKnown RBP1.67□□□□□ -2.14
VPS54YDR027C EIS1Q05050 843 aaKnown RBP1.67□□□□□ -2.14
VPS54YDR027C BLS1Q06071 122 aa1.67□□□□□ -2.14
VPS54YDR027C AZF1P41696 914 aa1.66□□□□□ -2.14
VPS54YDR027C IAH1P41734 238 aa1.66□□□□□ -2.14
VPS54YDR027C BNA1P47096 177 aa1.66□□□□□ -2.14
VPS54YDR027C MSY1P48527 492 aa1.66□□□□□ -2.14
VPS54YDR027C RRT6P53117 311 aaPredicted RBP1.66□□□□□ -2.14
VPS54YDR027C CPR6P53691 371 aaKnown RBP1.66□□□□□ -2.14
VPS54YDR027C ADE16P54113 591 aaKnown RBP1.66□□□□□ -2.14
VPS54YDR027C PSR2Q07949 397 aa1.66□□□□□ -2.14
VPS54YDR027C ICL2Q12031 575 aa1.66□□□□□ -2.14
VPS54YDR027C BAG7Q12128 409 aa1.66□□□□□ -2.14
VPS54YDR027C SIR1P21691 654 aa1.66□□□□□ -2.14
VPS54YDR027C YCL049CP25577 312 aa1.66□□□□□ -2.14
VPS54YDR027C BUD14P27637 709 aa1.66□□□□□ -2.14
VPS54YDR027C SSH4P32343 579 aa1.66□□□□□ -2.14
VPS54YDR027C FRD1P32614 470 aaKnown RBP1.66□□□□□ -2.14
VPS54YDR027C YHR218WP38899 603 aa1.66□□□□□ -2.14
VPS54YDR027C PUG1P40100 303 aa1.66□□□□□ -2.14
VPS54YDR027C YIR014WP40570 242 aa1.66□□□□□ -2.14
VPS54YDR027C CTL1Q03220 320 aaKnown RBP1.66□□□□□ -2.14
VPS54YDR027C ARP10Q04549 284 aa1.66□□□□□ -2.14
VPS54YDR027C CBS2P14905 389 aa1.65□□□□□ -2.14
VPS54YDR027C POL3P15436 1097 aa1.65□□□□□ -2.14
VPS54YDR027C RIT1P23796 513 aa1.65□□□□□ -2.14
VPS54YDR027C URK1P27515 501 aa1.65□□□□□ -2.14
VPS54YDR027C MCM10P32354 571 aa1.65□□□□□ -2.14
VPS54YDR027C PSY4P38193 441 aa1.65□□□□□ -2.14
VPS54YDR027C NAB3P38996 802 aaKnown RBP RIP-Chip data1.65□□□□□ -2.14not detected
VPS54YDR027C DJP1P40564 432 aa1.65□□□□□ -2.14
VPS54YDR027C SHE10P53075 577 aa1.65□□□□□ -2.14
VPS54YDR027C MEP3P53390 489 aa1.65□□□□□ -2.14
VPS54YDR027C ASI1P54074 624 aa1.65□□□□□ -2.14
VPS54YDR027C TMA64Q04600 565 aaKnown RBP1.65□□□□□ -2.14
VPS54YDR027C ADE3P07245 946 aaKnown RBP1.65□□□□□ -2.15
VPS54YDR027C MCM3P24279 971 aaKnown RBP1.65□□□□□ -2.15
VPS54YDR027C IFA38P38286 347 aa1.65□□□□□ -2.15
VPS54YDR027C YHR131CP38835 850 aa1.65□□□□□ -2.15
VPS54YDR027C AXL2P38928 823 aa1.65□□□□□ -2.15
VPS54YDR027C FAA2P39518 744 aa1.65□□□□□ -2.15
VPS54YDR027C CAB2P40506 365 aa1.65□□□□□ -2.15
VPS54YDR027C PFA5Q03289 374 aa1.65□□□□□ -2.15
VPS54YDR027C TFC6Q06339 672 aa1.65□□□□□ -2.15
VPS54YDR027C CSR2Q12734 1121 aa1.65□□□□□ -2.15
VPS54YDR027C APC1P53886 1748 aa1.65□□□□□ -2.15
VPS54YDR027C KRE5P22023 1365 aa1.65□□□□□ -2.15
VPS54YDR027C MTF2P10849 440 aa1.64□□□□□ -2.15
VPS54YDR027C CLB4P24871 460 aa1.64□□□□□ -2.15
VPS54YDR027C MKT1P40850 830 aaKnown RBP1.64□□□□□ -2.15
VPS54YDR027C RTS2P40962 232 aa1.64□□□□□ -2.15
VPS54YDR027C SGF73P53165 657 aa1.64□□□□□ -2.15
VPS54YDR027C EKI1Q03764 534 aa1.64□□□□□ -2.15
VPS54YDR027C PCD1Q12524 340 aa1.64□□□□□ -2.15
VPS54YDR027C SSM4P40318 1319 aa1.64□□□□□ -2.15
VPS54YDR027C PRP8P33334 2413 aaKnown RBP1.64□□□□□ -2.15
VPS54YDR027C YIL177CP40434 1758 aa1.64□□□□□ -2.15
VPS54YDR027C YJL225CP40889 1758 aa1.64□□□□□ -2.15
Retrieved 100 of 5,963 RNA–protein pairs in 104.8 ms