RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	UTP9	P38882	575 aa	Known RBP	2.36	□□□□□ -2.03
NCL1	YBL024W	UIP3	P39547	235 aa		2.36	□□□□□ -2.03
NCL1	YBL024W	AFG3	P39925	761 aa		2.36	□□□□□ -2.03
NCL1	YBL024W	MET18	P40469	1032 aa		2.36	□□□□□ -2.03
NCL1	YBL024W	PKP1	P40530	394 aa		2.36	□□□□□ -2.03
NCL1	YBL024W	GPD2	P41911	440 aa	Known RBP	2.36	□□□□□ -2.03
NCL1	YBL024W	ROK1	P45818	564 aa	Predicted RBP	2.36	□□□□□ -2.03
NCL1	YBL024W	DIA3	P52290	468 aa		2.36	□□□□□ -2.03
NCL1	YBL024W	JJJ1	P53863	590 aa		2.36	□□□□□ -2.03
NCL1	YBL024W	YLR111W	Q12528	110 aa		2.36	□□□□□ -2.03
NCL1	YBL024W	MRP13	P12686	339 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	KRS1	P15180	591 aa	Known RBP	2.35	□□□□□ -2.03
NCL1	YBL024W	ADH7	P25377	361 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	GPI10	P30777	616 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	ELO1	P39540	310 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	RSC1	P53236	928 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	YGR066C	P53242	292 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	YNL058C	P53947	316 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	YLR455W	Q06188	304 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	BSP1	Q06604	576 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	MF(ALPHA)1	P01149	165 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	GAL80	P04387	435 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	2.35	□□□□□ -2.03	not detected
NCL1	YBL024W	GPA1	P08539	472 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	MRP2	P10663	115 aa	Predicted RBP	2.35	□□□□□ -2.03
NCL1	YBL024W	YCR006C	P25350	157 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	SSE2	P32590	693 aa	Known RBP	2.35	□□□□□ -2.03
NCL1	YBL024W	VMA8	P32610	256 aa	Known RBP	2.35	□□□□□ -2.03
NCL1	YBL024W	TCD2	P36101	447 aa	Known RBP	2.35	□□□□□ -2.03
NCL1	YBL024W	SMF1	P38925	575 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	ULP2	P40537	1034 aa	Predicted RBP	2.35	□□□□□ -2.03
NCL1	YBL024W	AXL1	P40851	1208 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	GAT1	P43574	510 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	IMD4	P50094	524 aa	Known RBP	2.35	□□□□□ -2.03
NCL1	YBL024W	EFM6	P53970	246 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	ZDS2	P54786	942 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	PFA5	Q03289	374 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	SNU56	Q03782	492 aa	Known RBP	2.35	□□□□□ -2.03
NCL1	YBL024W	DPB4	Q04603	196 aa	Known RBP	2.35	□□□□□ -2.03
NCL1	YBL024W	VPS38	Q05919	439 aa		2.35	□□□□□ -2.03
NCL1	YBL024W	FMP40	Q08968	688 aa	Predicted RBP	2.35	□□□□□ -2.03
NCL1	YBL024W	SNU66	Q12420	587 aa	Predicted RBP	2.35	□□□□□ -2.03
NCL1	YBL024W	SGS1	P35187	1447 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	PDX1	P16451	410 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	TKL1	P23254	680 aa	Known RBP	2.34	□□□□□ -2.03
NCL1	YBL024W	STE50	P25344	346 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	PUP3	P25451	205 aa	Known RBP	2.34	□□□□□ -2.03
NCL1	YBL024W	WBP1	P33767	430 aa	Known RBP	2.34	□□□□□ -2.03
NCL1	YBL024W	YBR144C	P34215	104 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	UBP11	P36026	717 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	PXL1	P36166	706 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	VID24	P38263	362 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	APD1	P38281	316 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	ORC5	P50874	479 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	VID30	P53076	958 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	HOS2	P53096	452 aa	Predicted RBP	2.34	□□□□□ -2.03
NCL1	YBL024W	YTP1	P53584	459 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	ATP23	P53722	227 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	IPI3	P53877	555 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	MDG1	P53885	366 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	YDR131C	Q03899	556 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	MRD1	Q06106	887 aa	Known RBP	2.34	□□□□□ -2.03
NCL1	YBL024W	RIM20	Q12033	661 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	RLM1	Q12224	676 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	FRE7	Q12333	620 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	SFI1	Q12369	946 aa		2.34	□□□□□ -2.03
NCL1	YBL024W	RAP1	P11938	827 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	MBR1	P23493	339 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	SAS3	P34218	831 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	SEF1	P34228	1148 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	CST26	P38226	397 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	ARP1	P38696	384 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	ANS1	P38832	159 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	PSA1	P41940	361 aa	Known RBP	2.33	□□□□□ -2.04
NCL1	YBL024W	PET130	P47065	347 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	APT1	P49435	187 aa	Known RBP	2.33	□□□□□ -2.04
NCL1	YBL024W	NNF2	P53253	936 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	STP1	Q00947	519 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	YDR239C	Q03780	787 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	PDR8	Q06149	701 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	TPO3	Q06451	622 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	TEN1	Q07921	160 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	RPS10A	Q08745	105 aa	Predicted RBP	2.33	□□□□□ -2.04
NCL1	YBL024W	YLR049C	Q12110	428 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	LEU9	Q12166	604 aa	Known RBP	2.33	□□□□□ -2.04
NCL1	YBL024W	RGT2	Q12300	763 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	AVL9	Q12500	764 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	PDA1	P16387	420 aa	Known RBP	2.33	□□□□□ -2.04
NCL1	YBL024W	IMG1	P25626	169 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	MSS51	P32335	436 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	YKL050C	P35736	922 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	OCT1	P35999	772 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	NUP133	P36161	1157 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	TSC10	P38342	320 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	ALG5	P40350	334 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	YJL107C	P42947	387 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	FAR3	P46671	204 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	RPS10B	P46784	105 aa	Known RBP	2.33	□□□□□ -2.04
NCL1	YBL024W	SMC3	P47037	1230 aa		2.33	□□□□□ -2.04
NCL1	YBL024W	BPL1	P48445	690 aa	Predicted RBP	2.33	□□□□□ -2.04

Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms