RNA–Protein interactions for RNA: YAL043C

PTA1, Transcript of Subunit of holo-CPF, yeast

Gene PTA1, Length 2,358 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTA1	YAL043C	IMA2	Q08295	589 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	SGT1	Q08446	395 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	TRE2	Q08693	809 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	RPS10A	Q08745	105 aa	Predicted RBP	4.1	□□□□□ -1.75
PTA1	YAL043C	GPM3	Q12326	303 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	ARG81	P05085	880 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	PUT4	P15380	627 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	PHO81	P17442	1178 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	CCA1	P21269	546 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	TSR4	P25040	408 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	NDI1	P32340	513 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	TFB1	P32776	642 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	PEX5	P35056	612 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	YBR138C	P38277	524 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	YHR218W	P38899	603 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	SWD1	P39706	426 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	RMD8	P43620	662 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	NUP84	P52891	726 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	STP1	Q00947	519 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	SRP1	Q02821	542 aa	Known RBP	4.1	□□□□□ -1.75
PTA1	YAL043C	CWC15	Q03772	175 aa	Known RBP	4.1	□□□□□ -1.75
PTA1	YAL043C	TIF35	Q04067	274 aa	Known RBP	4.1	□□□□□ -1.75
PTA1	YAL043C	HPT1	Q04178	221 aa	Known RBP	4.1	□□□□□ -1.75
PTA1	YAL043C	ARP9	Q05123	467 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	SWA2	Q06677	668 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	CDA1	Q06702	301 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	FMP25	Q08023	583 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	SLD7	Q08457	257 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	MET7	Q08645	548 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	MDM20	Q12387	796 aa	Known RBP	4.1	□□□□□ -1.75
PTA1	YAL043C	KCS1	Q12494	1050 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	YPL247C	Q12523	523 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	LSO1	Q3E827	93 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	VCX1	Q99385	411 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	RHO2	P06781	192 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	COR1	P07256	457 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	SPS1	P08458	490 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	YAP1	P19880	650 aa	Known RBP	4.09	□□□□□ -1.75
PTA1	YAL043C	BRF1	P29056	596 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	HBS1	P32769	611 aa	Known RBP	4.09	□□□□□ -1.75
PTA1	YAL043C	ATO2	P32907	282 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	ARC19	P33204	171 aa	Known RBP	4.09	□□□□□ -1.75
PTA1	YAL043C	DRE2	P36152	348 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	MSC7	P38694	644 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	NUP60	P39705	539 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	GPB2	P39717	880 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	YAT2	P40017	923 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	UBP7	P40453	1071 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	CDC1	P40986	491 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	DIM1	P41819	318 aa	Known RBP	4.09	□□□□□ -1.75
PTA1	YAL043C	ALT2	P52892	507 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	GPI1	P53306	609 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	YTP1	P53584	459 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	BRE5	P53741	515 aa	Known RBP	4.09	□□□□□ -1.75
PTA1	YAL043C	SLG1	P54867	378 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	SXM1	Q04175	944 aa	Known RBP	4.09	□□□□□ -1.75
PTA1	YAL043C	DYN3	Q04949	312 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	GLO2	Q05584	274 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	PEX15	Q08215	383 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	ESA1	Q08649	445 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	ULA1	Q12059	462 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	UPC2	Q12151	913 aa		4.09	□□□□□ -1.75
PTA1	YAL043C	CAR1	P00812	333 aa	Known RBP	4.09	□□□□□ -1.76
PTA1	YAL043C	YCK2	P23292	546 aa	Known RBP	4.09	□□□□□ -1.76
PTA1	YAL043C	UBC8	P28263	218 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	HRR25	P29295	494 aa	Known RBP	4.09	□□□□□ -1.76
PTA1	YAL043C	SAC1	P32368	623 aa	Known RBP	4.09	□□□□□ -1.76
PTA1	YAL043C	SFP1	P32432	683 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	RIB7	P33312	244 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	TIF3	P34167	436 aa	Known RBP	4.09	□□□□□ -1.76
PTA1	YAL043C	PPX1	P38698	397 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	LYS9	P38999	446 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	FIR1	P40020	876 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	YRB2	P40517	327 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	IRC6	P43615	237 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	CCT8	P47079	568 aa	Known RBP	4.09	□□□□□ -1.76
PTA1	YAL043C	YJR154W	P47181	346 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	RFX1	P48743	811 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	MIG2	P53035	382 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	BUD32	P53323	261 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	YNL018C	P53976	612 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	YNL010W	P53981	241 aa	Known RBP	4.09	□□□□□ -1.76
PTA1	YAL043C	LSM3	P57743	89 aa	Known RBP	4.09	□□□□□ -1.76
PTA1	YAL043C	LOT6	Q07923	191 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	YOL159C	Q08300	171 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	PSY3	Q12318	242 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	ARP7	Q12406	477 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	NOT5	Q12514	560 aa	Predicted RBP	4.09	□□□□□ -1.76
PTA1	YAL043C	APM4	Q99186	491 aa		4.09	□□□□□ -1.76
PTA1	YAL043C	SNF4	P12904	322 aa		4.08	□□□□□ -1.76
PTA1	YAL043C	URA4	P20051	364 aa		4.08	□□□□□ -1.76
PTA1	YAL043C	DPB2	P24482	689 aa	Predicted RBP	4.08	□□□□□ -1.76
PTA1	YAL043C	GAC1	P28006	793 aa		4.08	□□□□□ -1.76
PTA1	YAL043C	PTP2	P29461	750 aa		4.08	□□□□□ -1.76
PTA1	YAL043C	BZZ1	P38822	633 aa		4.08	□□□□□ -1.76
PTA1	YAL043C	AIM18	P38884	321 aa		4.08	□□□□□ -1.76
PTA1	YAL043C	YEL028W	P39989	153 aa		4.08	□□□□□ -1.76
PTA1	YAL043C	ARF3	P40994	183 aa	RIP-Chip data	4.08	□□□□□ -1.76	not detected
PTA1	YAL043C	ESF2	P53743	316 aa	Known RBP	4.08	□□□□□ -1.76
PTA1	YAL043C	MUK1	Q02866	612 aa		4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 27.3 ms