RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W SIP1P32578 815 aa5.23□□□□□ -1.57
VPS28YPL065W RPT3P33298 428 aaKnown RBP5.23□□□□□ -1.57
VPS28YPL065W TEF4P36008 412 aaKnown RBP5.23□□□□□ -1.57
VPS28YPL065W ERC1P38767 581 aa5.23□□□□□ -1.57
VPS28YPL065W LAS21P40367 830 aa5.23□□□□□ -1.57
VPS28YPL065W SAE2P46946 345 aa5.23□□□□□ -1.57
VPS28YPL065W NPA3P47122 385 aa5.23□□□□□ -1.57
VPS28YPL065W COG2P53271 262 aa5.23□□□□□ -1.57
VPS28YPL065W MRPL1Q04599 285 aa5.23□□□□□ -1.57
VPS28YPL065W YPR089WO13585 888 aa5.22□□□□□ -1.57
VPS28YPL065W TY2A-LR1P0C2J4 438 aa5.22□□□□□ -1.57
VPS28YPL065W TY2A-FP0CX61 438 aa5.22□□□□□ -1.57
VPS28YPL065W TY2A-GR2P0CX62 438 aa5.22□□□□□ -1.57
VPS28YPL065W TY2A-CP25383 438 aa5.22□□□□□ -1.57
VPS28YPL065W YER010CP40011 234 aa5.22□□□□□ -1.57
VPS28YPL065W CSL4P53859 292 aaPredicted RBP5.22□□□□□ -1.57
VPS28YPL065W TY2A-DR2Q03483 438 aa5.22□□□□□ -1.57
VPS28YPL065W YMR018WQ04364 514 aa5.22□□□□□ -1.57
VPS28YPL065W SNO4Q04902 237 aa5.22□□□□□ -1.57
VPS28YPL065W HRD3Q05787 833 aa5.22□□□□□ -1.57
VPS28YPL065W HSP33Q08914 237 aaKnown RBP5.22□□□□□ -1.57
VPS28YPL065W HSP32Q08992 237 aa5.22□□□□□ -1.57
VPS28YPL065W TY2A-BQ12260 438 aa5.22□□□□□ -1.57
VPS28YPL065W TY2A-OR2Q12293 438 aa5.22□□□□□ -1.57
VPS28YPL065W TY2A-DR1Q12392 438 aa5.22□□□□□ -1.57
VPS28YPL065W TY2A-OR1Q12439 438 aa5.22□□□□□ -1.57
VPS28YPL065W TY2A-DR3Q99303 438 aa5.22□□□□□ -1.57
VPS28YPL065W COX1P00401 534 aa5.21□□□□□ -1.58
VPS28YPL065W YML003WP0CF16 290 aa5.21□□□□□ -1.58
VPS28YPL065W YJU2P28320 278 aaPredicted RBP5.21□□□□□ -1.58
VPS28YPL065W CNS1P33313 385 aa5.21□□□□□ -1.58
VPS28YPL065W NUP120P35729 1037 aa5.21□□□□□ -1.58
VPS28YPL065W RPF2P36160 344 aaKnown RBP5.21□□□□□ -1.58
VPS28YPL065W GEX2P36173 615 aa5.21□□□□□ -1.58
VPS28YPL065W PLM2Q04383 521 aa5.21□□□□□ -1.58
VPS28YPL065W GTB1Q04924 702 aa5.21□□□□□ -1.58
VPS28YPL065W TMA16Q08687 178 aa5.21□□□□□ -1.58
VPS28YPL065W RFA2P26754 273 aaKnown RBP5.2□□□□□ -1.58
VPS28YPL065W PXL1P36166 706 aa5.2□□□□□ -1.58
VPS28YPL065W PSD1P39006 500 aa5.2□□□□□ -1.58
VPS28YPL065W DPH1P40487 425 aaKnown RBP5.2□□□□□ -1.58
VPS28YPL065W IRC7P43623 340 aa5.2□□□□□ -1.58
VPS28YPL065W REG1Q00816 1014 aa5.2□□□□□ -1.58
VPS28YPL065W OPY2Q06810 360 aa5.2□□□□□ -1.58
VPS28YPL065W FUN12P39730 1002 aaKnown RBP5.19□□□□□ -1.58
VPS28YPL065W RIC1P40395 1056 aa5.19□□□□□ -1.58
VPS28YPL065W YIL161WP40449 235 aaKnown RBP5.19□□□□□ -1.58
VPS28YPL065W CFD1P40558 293 aa5.19□□□□□ -1.58
VPS28YPL065W IST3P40565 148 aaPredicted RBP5.19□□□□□ -1.58
VPS28YPL065W LSC1P53598 329 aaKnown RBP5.19□□□□□ -1.58
VPS28YPL065W CBK1P53894 756 aa5.19□□□□□ -1.58
VPS28YPL065W CYK3Q07533 885 aa5.19□□□□□ -1.58
VPS28YPL065W SWT1Q12104 458 aa5.19□□□□□ -1.58
VPS28YPL065W RTC1Q08281 1341 aa5.19□□□□□ -1.58
VPS28YPL065W YLR302CO13544 120 aa5.18□□□□□ -1.58
VPS28YPL065W YMR085WP0CF18 432 aa5.18□□□□□ -1.58
VPS28YPL065W MGM1P32266 881 aa5.18□□□□□ -1.58
VPS28YPL065W RGT1P32862 1170 aa5.18□□□□□ -1.58
VPS28YPL065W VBA2P38358 474 aaKnown RBP5.18□□□□□ -1.58
VPS28YPL065W YMR124WP39523 943 aaKnown RBP5.18□□□□□ -1.58
VPS28YPL065W YIL024CP40543 189 aa5.18□□□□□ -1.58
VPS28YPL065W AAT1Q01802 451 aa5.18□□□□□ -1.58
VPS28YPL065W YDR056CQ12025 205 aa5.18□□□□□ -1.58
VPS28YPL065W YOL087CQ99247 1116 aa5.18□□□□□ -1.58
VPS28YPL065W SES1P07284 462 aaKnown RBP5.17□□□□□ -1.58
VPS28YPL065W ERG8P24521 451 aa5.17□□□□□ -1.58
VPS28YPL065W LRE1P25579 583 aaKnown RBP5.17□□□□□ -1.58
VPS28YPL065W CHS3P29465 1165 aa5.17□□□□□ -1.58
VPS28YPL065W HES1P35843 434 aa5.17□□□□□ -1.58
VPS28YPL065W UBX6P47049 396 aa5.17□□□□□ -1.58
VPS28YPL065W ASE1P50275 885 aa5.17□□□□□ -1.58
VPS28YPL065W VPS72Q03388 795 aa5.17□□□□□ -1.58
VPS28YPL065W NUP53Q03790 475 aa5.17□□□□□ -1.58
VPS28YPL065W YDR109CQ04585 715 aa5.17□□□□□ -1.58
VPS28YPL065W SPO16P17122 198 aa5.16□□□□□ -1.58
VPS28YPL065W GFD2P25370 566 aaKnown RBP5.16□□□□□ -1.58
VPS28YPL065W LAC1P28496 418 aa5.16□□□□□ -1.58
VPS28YPL065W CBF2P32504 956 aa5.16□□□□□ -1.58
VPS28YPL065W MUD2P36084 527 aaKnown RBP5.16□□□□□ -1.58
VPS28YPL065W COP1P53622 1201 aaKnown RBP5.16□□□□□ -1.58
VPS28YPL065W ATG23Q06671 453 aa5.16□□□□□ -1.58
VPS28YPL065W YPL191CQ08930 360 aa5.16□□□□□ -1.58
VPS28YPL065W HER1Q12276 1246 aa5.16□□□□□ -1.58
VPS28YPL065W CET1O13297 549 aaPredicted RBP5.15□□□□□ -1.59
VPS28YPL065W YSP3P25036 478 aa5.15□□□□□ -1.59
VPS28YPL065W MRP20P32387 263 aa5.15□□□□□ -1.59
VPS28YPL065W KES1P35844 434 aaKnown RBP5.15□□□□□ -1.59
VPS28YPL065W YEL068CP39977 110 aa5.15□□□□□ -1.59
VPS28YPL065W CIR1P42940 261 aa5.15□□□□□ -1.59
VPS28YPL065W MSY1P48527 492 aa5.15□□□□□ -1.59
VPS28YPL065W RAD34Q06665 692 aa5.15□□□□□ -1.59
VPS28YPL065W VCX1Q99385 411 aa5.15□□□□□ -1.59
VPS28YPL065W FUM1P08417 488 aaKnown RBP5.14□□□□□ -1.59
VPS28YPL065W NAB3P38996 802 aaKnown RBP RIP-Chip data5.14□□□□□ -1.59not detected
VPS28YPL065W FMP10P40098 244 aa5.14□□□□□ -1.59
VPS28YPL065W PFK26P40433 827 aaKnown RBP5.14□□□□□ -1.59
VPS28YPL065W DJP1P40564 432 aa5.14□□□□□ -1.59
VPS28YPL065W YNR061CP53747 219 aa5.14□□□□□ -1.59
VPS28YPL065W ADE16P54113 591 aaKnown RBP5.14□□□□□ -1.59
VPS28YPL065W YAT1P80235 687 aa5.14□□□□□ -1.59
Retrieved 100 of 5,963 RNA–protein pairs in 74 ms