RNA–Protein interactions for RNA: YAL043C

PTA1, Transcript of Subunit of holo-CPF, yeast

Gene PTA1, Length 2,358 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTA1	YAL043C	ERR1	P0CX10	437 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	ERR2	P0CX11	437 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	APE1	P14904	514 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	RTG2	P32608	588 aa	Known RBP	4.12	□□□□□ -1.75
PTA1	YAL043C	UGP1	P32861	499 aa	Known RBP	4.12	□□□□□ -1.75
PTA1	YAL043C	MRS6	P32864	603 aa	Known RBP	4.12	□□□□□ -1.75
PTA1	YAL043C	MRP4	P32902	394 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	RIM2	P38127	377 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	YBL029W	P38201	376 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	TSC10	P38342	320 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	OCA5	P38738	679 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	HMF1	P40037	129 aa	Known RBP	4.12	□□□□□ -1.75
PTA1	YAL043C	ERR3	P42222	437 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	KEL2	P50090	882 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	RPA14	P50106	137 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	PUS2	P53167	370 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	ELA1	P53861	379 aa	Predicted RBP	4.12	□□□□□ -1.75
PTA1	YAL043C	ALG11	P53954	548 aa	Known RBP	4.12	□□□□□ -1.75
PTA1	YAL043C	RPL22B	P56628	122 aa	Known RBP	4.12	□□□□□ -1.75
PTA1	YAL043C	CEG1	Q01159	459 aa	Predicted RBP	4.12	□□□□□ -1.75
PTA1	YAL043C	ARR1	Q06596	294 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	TSR2	Q06672	205 aa	Known RBP	4.12	□□□□□ -1.75
PTA1	YAL043C	MCH5	Q08777	521 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	GIS3	Q12418	502 aa		4.12	□□□□□ -1.75
PTA1	YAL043C	STE2	D6VTK4	431 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	CDC19	P00549	500 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	GPA2	P10823	449 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	IDI1	P15496	288 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	HSP26	P15992	214 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
PTA1	YAL043C	YJU3	P28321	313 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	UTP18	P40362	594 aa	Predicted RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	FMP32	P43557	207 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	GPI8	P49018	411 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	MRK1	P50873	501 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	RTA1	P53047	317 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	YAF9	P53930	226 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	KTR6	P54070	446 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	SKY1	Q03656	742 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	TVP15	Q03860	143 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	ARA2	Q04212	335 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	ENT2	Q05785	613 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	AVO1	Q08236	1176 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	CUE5	Q08412	411 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	CLP1	Q08685	445 aa	Predicted RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	UBX3	Q12229	455 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	GPR1	Q12361	961 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	PCD1	Q12524	340 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	EFG1	Q3E705	233 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	IZH4	Q99393	312 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	MIS1	P09440	975 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	PRP6	P19735	899 aa	Predicted RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	TYR1	P20049	452 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	SGF29	P25554	259 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	RAD27	P26793	382 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	PHA2	P32452	334 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	MEI5	P32489	222 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	CSE2	P33308	149 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	NOP4	P37838	685 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	BIT2	P38346	545 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	GUA1	P38625	525 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	PPE1	P38796	400 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	CRP1	P38845	465 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	SPR3	P41901	512 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	YRB1	P41920	201 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	YJR054W	P47114	497 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	ASN2	P49090	572 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
PTA1	YAL043C	ARE2	P53629	642 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	TIM11	P81449	96 aa	Predicted RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	RPN9	Q04062	393 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	SPG3	Q04398	127 aa	Predicted RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	SPC2	Q04969	178 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	RSA3	Q05942	220 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	RRP9	Q06506	573 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	DTD1	Q07648	150 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	RPN8	Q08723	338 aa	Known RBP	4.11	□□□□□ -1.75
PTA1	YAL043C	YPL191C	Q08930	360 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	AVL9	Q12500	764 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	ATG11	Q12527	1178 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	CTF3	Q12748	733 aa		4.11	□□□□□ -1.75
PTA1	YAL043C	IMA3	P0CW40	589 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	IMA4	P0CW41	589 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	GLN4	P13188	809 aa	Known RBP	4.1	□□□□□ -1.75
PTA1	YAL043C	MET16	P18408	261 aa	Predicted RBP	4.1	□□□□□ -1.75
PTA1	YAL043C	PER1	P25625	357 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	KIP2	P28743	706 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	NUF2	P33895	451 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	ATG12	P38316	186 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	RIM11	P38615	370 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	YHI9	P38765	294 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	UTP9	P38882	575 aa	Known RBP	4.1	□□□□□ -1.75
PTA1	YAL043C	RRD1	P40454	393 aa	Known RBP	4.1	□□□□□ -1.75
PTA1	YAL043C	LAM5	P43560	674 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	RPS10B	P46784	105 aa	Known RBP	4.1	□□□□□ -1.75
PTA1	YAL043C	TEL2	P53038	688 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	SHE10	P53075	577 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	CUS2	P53830	285 aa	Predicted RBP	4.1	□□□□□ -1.75
PTA1	YAL043C	ARP4	P80428	489 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	RIF2	Q06208	395 aa		4.1	□□□□□ -1.75
PTA1	YAL043C	RCL1	Q08096	367 aa	Predicted RBP	4.1	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 19.2 ms