RNA–Protein interactions for RNA: ENSMUST00000109477.1

Ccdc88a-202, Transcript of Girdin, mousemouse

TSL 2 BASIC

Gene Ccdc88a, Length 1,716 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-202ENSMUST00000109477 Cox6b2Q80ZN9 88 aa10.7□□□□□ -0.7
Ccdc88a-202ENSMUST00000109477 Uqcr11Q9CPX8 56 aa10.7□□□□□ -0.7
Ccdc88a-202ENSMUST00000109477 Crct1Q6PAI5 102 aa10.66□□□□□ -0.7
Ccdc88a-202ENSMUST00000109477 Ndufb1P0DN34 57 aa10.64□□□□□ -0.71
Ccdc88a-202ENSMUST00000109477 Limd2Q8BGB5 128 aa10.64□□□□□ -0.71
Ccdc88a-202ENSMUST00000109477 A0A1Y7VLE6 161 aa10.64□□□□□ -0.71
Ccdc88a-202ENSMUST00000109477 ZanO88799 5376 aa10.62□□□□□ -0.71
Ccdc88a-202ENSMUST00000109477 2210017I01RikA0A0A6YVV1 95 aa10.61□□□□□ -0.71
Ccdc88a-202ENSMUST00000109477 Krtap16-3Q8C1I6 86 aa10.54□□□□□ -0.72
Ccdc88a-202ENSMUST00000109477 Krtap28-13A0A087WQP5 138 aa10.51□□□□□ -0.73
Ccdc88a-202ENSMUST00000109477 Fat4Q2PZL6 4981 aa10.5□□□□□ -0.73
Ccdc88a-202ENSMUST00000109477 Gm17606F6ZL36 78 aa10.49□□□□□ -0.73
Ccdc88a-202ENSMUST00000109477 Krtap19-1Q925H2 87 aa10.49□□□□□ -0.73
Ccdc88a-202ENSMUST00000109477 Krtap13-1Q8K198 168 aa10.47□□□□□ -0.73
Ccdc88a-202ENSMUST00000109477 Fam229aB2KGE5 128 aa10.47□□□□□ -0.73
Ccdc88a-202ENSMUST00000109477 Krtap19-3Q925H6 87 aa10.47□□□□□ -0.73
Ccdc88a-202ENSMUST00000109477 Krtap3-1A2A591 98 aa10.44□□□□□ -0.74
Ccdc88a-202ENSMUST00000109477 LorP18165 486 aa10.41□□□□□ -0.74
Ccdc88a-202ENSMUST00000109477 Rnf213E9Q555 5152 aaKnown RBP10.39□□□□□ -0.75
Ccdc88a-202ENSMUST00000109477 Gm10318A0A1W2P728 225 aa10.38□□□□□ -0.75
Ccdc88a-202ENSMUST00000109477 Sec61gP60060 68 aa10.36□□□□□ -0.75
Ccdc88a-202ENSMUST00000109477 Sox16Q62247 57 aa10.33□□□□□ -0.76
Ccdc88a-202ENSMUST00000109477 Krtap1-5A2A590 122 aa10.32□□□□□ -0.76
Ccdc88a-202ENSMUST00000109477 Gm10382Q3V0T5 144 aa10.32□□□□□ -0.76
Ccdc88a-202ENSMUST00000109477 Gm11555B1AQ89 175 aa10.31□□□□□ -0.76
Ccdc88a-202ENSMUST00000109477 Gm19402J3QJV4 266 aa10.26□□□□□ -0.77
Ccdc88a-202ENSMUST00000109477 A030005K14RikA0A1Y7VNY1 122 aa10.24□□□□□ -0.77
Ccdc88a-202ENSMUST00000109477 1700042G07RikB1AUF7 90 aa10.24□□□□□ -0.77
Ccdc88a-202ENSMUST00000109477 4933415A04RikQ9D443 101 aa10.24□□□□□ -0.77
Ccdc88a-202ENSMUST00000109477 Gm10337F7DEP7 55 aa10.21□□□□□ -0.77
Ccdc88a-202ENSMUST00000109477 Krtap1-4Q3V2D6 188 aa10.17□□□□□ -0.78
Ccdc88a-202ENSMUST00000109477 H2al1kJ3QP08 105 aa10.15□□□□□ -0.78
Ccdc88a-202ENSMUST00000109477 H2al1mQ9DAD9 105 aa10.15□□□□□ -0.78
Ccdc88a-202ENSMUST00000109477 BC029722A0A0N4SW31 51 aa10.09□□□□□ -0.79
Ccdc88a-202ENSMUST00000109477 Gm20537G3UYK7 97 aa10.07□□□□□ -0.8
Ccdc88a-202ENSMUST00000109477 Gm9955Q8CEJ8 102 aa10.07□□□□□ -0.8
Ccdc88a-202ENSMUST00000109477 Gm11563B1AQ90 168 aa10.02□□□□□ -0.8
Ccdc88a-202ENSMUST00000109477 Krtap4-7Q9D732 168 aa10.02□□□□□ -0.8
Ccdc88a-202ENSMUST00000109477 SspoQ8CG65 4998 aa9.95□□□□□ -0.82
Ccdc88a-202ENSMUST00000109477 Gm10061D3Z714 54 aa9.95□□□□□ -0.82
Ccdc88a-202ENSMUST00000109477 A030005L19RikA0A1Y7VIU2 113 aa9.93□□□□□ -0.82
Ccdc88a-202ENSMUST00000109477 Gm19426M0QWC7 77 aa9.92□□□□□ -0.82
Ccdc88a-202ENSMUST00000109477 SvipQ3UZP4 77 aa9.88□□□□□ -0.83
Ccdc88a-202ENSMUST00000109477 Gm3646F6S692 53 aa9.83□□□□□ -0.84
Ccdc88a-202ENSMUST00000109477 Ndufs5Q99LY9 106 aa9.82□□□□□ -0.84
Ccdc88a-202ENSMUST00000109477 Spink7Q6IE32 76 aa9.65□□□□□ -0.87
Ccdc88a-202ENSMUST00000109477 CriptO70333 101 aa9.62□□□□□ -0.87
Ccdc88a-202ENSMUST00000109477 Gm3880A0A1B0GSB3 72 aa9.62□□□□□ -0.87
Ccdc88a-202ENSMUST00000109477 Gm11569B1AQB1 180 aa9.62□□□□□ -0.87
Ccdc88a-202ENSMUST00000109477 Gm17402F6Z0L5 76 aa9.62□□□□□ -0.87
Ccdc88a-202ENSMUST00000109477 B930094E09RikQ8C4T2 136 aa9.53□□□□□ -0.88
Ccdc88a-202ENSMUST00000109477 Pla2g10Q9QXX3 151 aa9.48□□□□□ -0.89
Ccdc88a-202ENSMUST00000109477 Krtap12-1Q9Z287 130 aa9.47□□□□□ -0.89
Ccdc88a-202ENSMUST00000109477 Sprr2a3Q4KL71 83 aa9.46□□□□□ -0.89
Ccdc88a-202ENSMUST00000109477 Sprr2a1Q9CQK8 83 aa9.46□□□□□ -0.89
Ccdc88a-202ENSMUST00000109477 Lce1jD3YUU5 139 aa9.45□□□□□ -0.9
Ccdc88a-202ENSMUST00000109477 Gm7544A0A1Y7VJ58 118 aa9.43□□□□□ -0.9
Ccdc88a-202ENSMUST00000109477 Krtap19-2Q925I0 141 aa9.37□□□□□ -0.91
Ccdc88a-202ENSMUST00000109477 Krtap19-9aF8WH65 55 aa9.36□□□□□ -0.91
Ccdc88a-202ENSMUST00000109477 Krtap9-5A2A5X3 358 aa9.34□□□□□ -0.91
Ccdc88a-202ENSMUST00000109477 Krtap17-1A2A5X6 109 aa9.34□□□□□ -0.92
Ccdc88a-202ENSMUST00000109477 A0A1Y7VJ07 166 aa9.3□□□□□ -0.92
Ccdc88a-202ENSMUST00000109477 Gm12216A0A1W2P827 62 aa9.25□□□□□ -0.93
Ccdc88a-202ENSMUST00000109477 Muc5bE9Q5I3 4800 aa9.24□□□□□ -0.93
Ccdc88a-202ENSMUST00000109477 Gm11562A0PK51 136 aa9.19□□□□□ -0.94
Ccdc88a-202ENSMUST00000109477 Prm2P07978 107 aa9.19□□□□□ -0.94
Ccdc88a-202ENSMUST00000109477 Krtap4-2B1AQ85 167 aa9.18□□□□□ -0.94
Ccdc88a-202ENSMUST00000109477 Romo1P60603 79 aa9.16□□□□□ -0.94
Ccdc88a-202ENSMUST00000109477 Lce1gQ9D195 139 aa9.11□□□□□ -0.95
Ccdc88a-202ENSMUST00000109477 Gm21887J3QQ04 176 aa9.02□□□□□ -0.96
Ccdc88a-202ENSMUST00000109477 Gm19668J3QMD1 248 aa8.98□□□□□ -0.97
Ccdc88a-202ENSMUST00000109477 A030014E15RikA0A1Y7VJV2 120 aa8.96□□□□□ -0.98
Ccdc88a-202ENSMUST00000109477 Gm6358A0A087WPH4 74 aa8.92□□□□□ -0.98
Ccdc88a-202ENSMUST00000109477 Camk2n1Q6QWF9 78 aa8.88□□□□□ -0.99
Ccdc88a-202ENSMUST00000109477 Mdn1A2ANY6 5589 aaKnown RBP8.88□□□□□ -0.99
Ccdc88a-202ENSMUST00000109477 Syne2Q6ZWQ0 6874 aaKnown RBP8.88□□□□□ -0.99
Ccdc88a-202ENSMUST00000109477 Lce1iQ9D6P5 149 aa8.88□□□□□ -0.99
Ccdc88a-202ENSMUST00000109477 Krtap4-6Q3V4B7 195 aa8.81□□□□□ -1
Ccdc88a-202ENSMUST00000109477 Gm11596B1AQB0 205 aa8.8□□□□□ -1
Ccdc88a-202ENSMUST00000109477 Lce1a2Q9D1K4 149 aa8.77□□□□□ -1.01
Ccdc88a-202ENSMUST00000109477 Mt2P02798 61 aa8.57□□□□□ -1.04
Ccdc88a-202ENSMUST00000109477 Krtap8-1O08633 61 aa8.51□□□□□ -1.05
Ccdc88a-202ENSMUST00000109477 Krtap19-9bQ99NG9 58 aa8.46□□□□□ -1.06
Ccdc88a-202ENSMUST00000109477 A030003K21RikA0A1Y7VIM3 128 aa8.44□□□□□ -1.06
Ccdc88a-202ENSMUST00000109477 Gm11564A2A4L9 201 aa8.43□□□□□ -1.06
Ccdc88a-202ENSMUST00000109477 Gm11595B1AQA7 289 aa8.43□□□□□ -1.06
Ccdc88a-202ENSMUST00000109477 Krtap4-8B1AQA8 209 aa8.43□□□□□ -1.06
Ccdc88a-202ENSMUST00000109477 Krtap7-1Q9D3I6 87 aa8.31□□□□□ -1.08
Ccdc88a-202ENSMUST00000109477 Gm40193A0A1B0GT39 78 aa8.28□□□□□ -1.08
Ccdc88a-202ENSMUST00000109477 Krtap4-9B1AQA9 244 aa8.19□□□□□ -1.1
Ccdc88a-202ENSMUST00000109477 Krtap9-3Q3V2C1 136 aa8.15□□□□□ -1.11
Ccdc88a-202ENSMUST00000109477 Krtap22-2J3QNX6 67 aa8.14□□□□□ -1.11
Ccdc88a-202ENSMUST00000109477 Mt4P47945 62 aa8.12□□□□□ -1.11
Ccdc88a-202ENSMUST00000109477 Tnp1P10856 55 aa8.04□□□□□ -1.12
Ccdc88a-202ENSMUST00000109477 Mp68P56379 58 aa8.04□□□□□ -1.12
Ccdc88a-202ENSMUST00000109477 Fsip2A2ARZ3 6995 aa8.03□□□□□ -1.12
Ccdc88a-202ENSMUST00000109477 Gm6217A0A1Y7VJK9 128 aa8□□□□□ -1.13
Ccdc88a-202ENSMUST00000109477 Lce1bQ9D149 137 aa7.92□□□□□ -1.14
Ccdc88a-202ENSMUST00000109477 Krtap4-13Q9D7P3 165 aa7.89□□□□□ -1.15
Ccdc88a-202ENSMUST00000109477 Lce1hQ9D6R3 140 aa7.85□□□□□ -1.15
Retrieved 100 of 22,080 RNA–protein pairs in 47.6 ms