RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 TnxbO35452 4006 aa6.65□□□□□ -1.35
Ccdc88a-201ENSMUST00000040182 PrkdcP97313 4128 aa6.53□□□□□ -1.36
Ccdc88a-201ENSMUST00000040182 Gm19402J3QJV4 266 aa6.51□□□□□ -1.37
Ccdc88a-201ENSMUST00000040182 Kmt2aP55200 3966 aa6.5□□□□□ -1.37
Ccdc88a-201ENSMUST00000040182 Sprr2gO70558 76 aa6.49□□□□□ -1.37
Ccdc88a-201ENSMUST00000040182 Dnah6E9Q0B6 4144 aa6.42□□□□□ -1.38
Ccdc88a-201ENSMUST00000040182 Fras1Q80T14 4010 aa6.4□□□□□ -1.39
Ccdc88a-201ENSMUST00000040182 Dnah10D3YYQ8 4591 aa6.37□□□□□ -1.39
Ccdc88a-201ENSMUST00000040182 Dnah14A0A140LIJ4 4489 aa6.35□□□□□ -1.39
Ccdc88a-201ENSMUST00000040182 LorP18165 486 aa6.33□□□□□ -1.4
Ccdc88a-201ENSMUST00000040182 Lce3bQ9CQM7 98 aa6.32□□□□□ -1.4
Ccdc88a-201ENSMUST00000040182 Gm10100J3QK64 120 aa6.31□□□□□ -1.4
Ccdc88a-201ENSMUST00000040182 Dnah1E9Q8T7 4250 aa6.27□□□□□ -1.41
Ccdc88a-201ENSMUST00000040182 Vps13dB1ART2 4390 aa6.25□□□□□ -1.41
Ccdc88a-201ENSMUST00000040182 2310046K23RikA0A0A6YVW6 87 aa6.24□□□□□ -1.41
Ccdc88a-201ENSMUST00000040182 Lce3cQ91V05 98 aa6.2□□□□□ -1.42
Ccdc88a-201ENSMUST00000040182 Gm10142J3KMP7 120 aa6.16□□□□□ -1.42
Ccdc88a-201ENSMUST00000040182 Dync2h1Q45VK7 4306 aa6.09□□□□□ -1.44
Ccdc88a-201ENSMUST00000040182 Gm10272F7CZ33 110 aa6.09□□□□□ -1.44
Ccdc88a-201ENSMUST00000040182 Lce3eF8VQJ0 98 aa6.06□□□□□ -1.44
Ccdc88a-201ENSMUST00000040182 Lce3fQ6PAI4 98 aa6.06□□□□□ -1.44
Ccdc88a-201ENSMUST00000040182 Lce3dE9Q8V1 98 aa6.05□□□□□ -1.44
Ccdc88a-201ENSMUST00000040182 Dnah5Q8VHE6 4621 aa6.04□□□□□ -1.44
Ccdc88a-201ENSMUST00000040182 Hectd4E9Q2E4 4418 aa5.97□□□□□ -1.45
Ccdc88a-201ENSMUST00000040182 Pkhd1E9PZ36 4059 aa5.95□□□□□ -1.46
Ccdc88a-201ENSMUST00000040182 Lce3aQ497I5 98 aa5.92□□□□□ -1.46
Ccdc88a-201ENSMUST00000040182 Krtap16-3Q8C1I6 86 aa5.81□□□□□ -1.48
Ccdc88a-201ENSMUST00000040182 Krtap9-5A2A5X3 358 aa5.8□□□□□ -1.48
Ccdc88a-201ENSMUST00000040182 Sprr2iO70560 76 aa5.79□□□□□ -1.48
Ccdc88a-201ENSMUST00000040182 Lce1mQ9CR91 182 aa5.78□□□□□ -1.48
Ccdc88a-201ENSMUST00000040182 Dnah2P0C6F1 4456 aa5.77□□□□□ -1.49
Ccdc88a-201ENSMUST00000040182 Krtap19-3Q925H6 87 aa5.77□□□□□ -1.49
Ccdc88a-201ENSMUST00000040182 Dnah17Q69Z23 4481 aa5.77□□□□□ -1.49
Ccdc88a-201ENSMUST00000040182 Krtap22-2J3QNX6 67 aa5.75□□□□□ -1.49
Ccdc88a-201ENSMUST00000040182 PlecQ9QXS1 4691 aaKnown RBP5.74□□□□□ -1.49
Ccdc88a-201ENSMUST00000040182 Mt2P02798 61 aa5.72□□□□□ -1.49
Ccdc88a-201ENSMUST00000040182 Gm10024A0A0A0MQA4 119 aa5.72□□□□□ -1.49
Ccdc88a-201ENSMUST00000040182 Dnah11E9Q7N9 4488 aa5.69□□□□□ -1.5
Ccdc88a-201ENSMUST00000040182 Dnah9B1AR51 4484 aa5.69□□□□□ -1.5
Ccdc88a-201ENSMUST00000040182 Lrp1Q91ZX7 4545 aaKnown RBP5.66□□□□□ -1.5
Ccdc88a-201ENSMUST00000040182 Pkd1O08852 4293 aa5.65□□□□□ -1.5
Ccdc88a-201ENSMUST00000040182 Stard9Q80TF6 4561 aa5.64□□□□□ -1.51
Ccdc88a-201ENSMUST00000040182 Prm1P02319 51 aa5.6□□□□□ -1.51
Ccdc88a-201ENSMUST00000040182 ApobE9Q414 4505 aa5.6□□□□□ -1.51
Ccdc88a-201ENSMUST00000040182 Krtap19-4Q925H7 84 aa5.57□□□□□ -1.52
Ccdc88a-201ENSMUST00000040182 Krtap19-1Q925H2 87 aa5.56□□□□□ -1.52
Ccdc88a-201ENSMUST00000040182 Sprr2fO70557 76 aa5.54□□□□□ -1.52
Ccdc88a-201ENSMUST00000040182 Ryr1E9PZQ0 5035 aa5.5□□□□□ -1.53
Ccdc88a-201ENSMUST00000040182 Dync1h1Q9JHU4 4644 aaKnown RBP5.5□□□□□ -1.53
Ccdc88a-201ENSMUST00000040182 SacsQ9JLC8 4582 aa5.48□□□□□ -1.53
Ccdc88a-201ENSMUST00000040182 Lce1jD3YUU5 139 aa5.47□□□□□ -1.53
Ccdc88a-201ENSMUST00000040182 Lce1gQ9D195 139 aa5.47□□□□□ -1.53
Ccdc88a-201ENSMUST00000040182 Lce1iQ9D6P5 149 aa5.47□□□□□ -1.53
Ccdc88a-201ENSMUST00000040182 Lce1hQ9D6R3 140 aa5.47□□□□□ -1.53
Ccdc88a-201ENSMUST00000040182 Krtap9-3Q3V2C1 136 aa5.47□□□□□ -1.53
Ccdc88a-201ENSMUST00000040182 Mycbp2Q7TPH6 4711 aa5.46□□□□□ -1.54
Ccdc88a-201ENSMUST00000040182 Dnah8Q91XQ0 4731 aa5.46□□□□□ -1.54
Ccdc88a-201ENSMUST00000040182 Lce1bQ9D149 137 aa5.45□□□□□ -1.54
Ccdc88a-201ENSMUST00000040182 Sprr2eO70556 76 aa5.45□□□□□ -1.54
Ccdc88a-201ENSMUST00000040182 Pkhd1l1Q80ZA4 4249 aa5.45□□□□□ -1.54
Ccdc88a-201ENSMUST00000040182 Krtap19-2Q925I0 141 aa5.44□□□□□ -1.54
Ccdc88a-201ENSMUST00000040182 Lce1fB9EJP6 147 aa5.43□□□□□ -1.54
Ccdc88a-201ENSMUST00000040182 Lce1cQ9D1C5 147 aa5.43□□□□□ -1.54
Ccdc88a-201ENSMUST00000040182 Lce1lQ9D1G7 135 aa5.43□□□□□ -1.54
Ccdc88a-201ENSMUST00000040182 Lce1dQ9D731 133 aa5.43□□□□□ -1.54
Ccdc88a-201ENSMUST00000040182 Gm38119A0A0A6YX29 146 aa5.41□□□□□ -1.54
Ccdc88a-201ENSMUST00000040182 Lce1eQ9D139 143 aa5.4□□□□□ -1.55
Ccdc88a-201ENSMUST00000040182 Lrp1bQ9JI18 4599 aa5.38□□□□□ -1.55
Ccdc88a-201ENSMUST00000040182 Fat1A0A1L1SQU7 4645 aa5.37□□□□□ -1.55
Ccdc88a-201ENSMUST00000040182 Sprr2hO70559 108 aa5.24□□□□□ -1.57
Ccdc88a-201ENSMUST00000040182 Gm7735D3YX18 52 aa5.2□□□□□ -1.58
Ccdc88a-201ENSMUST00000040182 Gm9789Q8BIG3 52 aa5.17□□□□□ -1.58
Ccdc88a-201ENSMUST00000040182 Krtap31-2Q8CAY5 177 aa5.17□□□□□ -1.58
Ccdc88a-201ENSMUST00000040182 Fat2Q5F226 4351 aa5.16□□□□□ -1.58
Ccdc88a-201ENSMUST00000040182 Krtap1-3A2A588 173 aa5.09□□□□□ -1.59
Ccdc88a-201ENSMUST00000040182 Krtap31-1Q9D644 177 aa5.06□□□□□ -1.6
Ccdc88a-201ENSMUST00000040182 Fat3Q8BNA6 4555 aa5.03□□□□□ -1.6
Ccdc88a-201ENSMUST00000040182 Sprr2dO70555 85 aa5.01□□□□□ -1.61
Ccdc88a-201ENSMUST00000040182 Gm10061D3Z714 54 aa4.99□□□□□ -1.61
Ccdc88a-201ENSMUST00000040182 Gm11569B1AQB1 180 aa4.93□□□□□ -1.62
Ccdc88a-201ENSMUST00000040182 Dnhd1D3Z2X2 4750 aa4.89□□□□□ -1.63
Ccdc88a-201ENSMUST00000040182 Gm11562A0PK51 136 aa4.82□□□□□ -1.64
Ccdc88a-201ENSMUST00000040182 Mt4P47945 62 aa4.8□□□□□ -1.64
Ccdc88a-201ENSMUST00000040182 PcloQ9QYX7 5068 aa4.79□□□□□ -1.64
Ccdc88a-201ENSMUST00000040182 Gm11938Q9D3H4 131 aa4.78□□□□□ -1.64
Ccdc88a-201ENSMUST00000040182 Kmt2cQ8BRH4 4903 aa4.74□□□□□ -1.65
Ccdc88a-201ENSMUST00000040182 Ryr2E9Q401 4966 aaKnown RBP4.66□□□□□ -1.66
Ccdc88a-201ENSMUST00000040182 Herc2Q4U2R1 4836 aa4.65□□□□□ -1.66
Ccdc88a-201ENSMUST00000040182 Lrp2A2ARV4 4660 aa4.64□□□□□ -1.67
Ccdc88a-201ENSMUST00000040182 Lce1a2Q9D1K4 149 aa4.63□□□□□ -1.67
Ccdc88a-201ENSMUST00000040182 ZanO88799 5376 aa4.63□□□□□ -1.67
Ccdc88a-201ENSMUST00000040182 Mt3P28184 68 aa4.62□□□□□ -1.67
Ccdc88a-201ENSMUST00000040182 Krtap4-6Q3V4B7 195 aa4.57□□□□□ -1.68
Ccdc88a-201ENSMUST00000040182 Krtap4-2B1AQ85 167 aa4.55□□□□□ -1.68
Ccdc88a-201ENSMUST00000040182 Ryr3A2AGL3 4863 aa4.53□□□□□ -1.68
Ccdc88a-201ENSMUST00000040182 Krtap4-7Q9D732 168 aa4.43□□□□□ -1.7
Ccdc88a-201ENSMUST00000040182 Sprr2bO70554 98 aa4.43□□□□□ -1.7
Ccdc88a-201ENSMUST00000040182 2300003K06RikA2A4M0 262 aa4.37□□□□□ -1.71
Ccdc88a-201ENSMUST00000040182 Mt1P02802 61 aaKnown RBP4.36□□□□□ -1.71
Ccdc88a-201ENSMUST00000040182 Lce1kJ3QP15 125 aa4.36□□□□□ -1.71
Retrieved 100 of 22,080 RNA–protein pairs in 42 ms