RNA–Protein interactions for RNA: YDR312W

SSF2, Transcript of Protein required for ribosomal large subunit maturation, yeast

Gene SSF2, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSF2	YDR312W	SPO14	P36126	1683 aa		3.18	□□□□□ -1.9
SSF2	YDR312W	YOR1	P53049	1477 aa		3.18	□□□□□ -1.9
SSF2	YDR312W	ATP4	P05626	244 aa		3.18	□□□□□ -1.9
SSF2	YDR312W	YKL133C	P36066	463 aa		3.18	□□□□□ -1.9
SSF2	YDR312W	HIS6	P40545	261 aa		3.18	□□□□□ -1.9
SSF2	YDR312W	TDA10	P42938	290 aa		3.18	□□□□□ -1.9
SSF2	YDR312W	QRI7	P43122	407 aa		3.18	□□□□□ -1.9
SSF2	YDR312W	TEP1	P53916	434 aa		3.18	□□□□□ -1.9
SSF2	YDR312W	MPS1	P54199	764 aa		3.18	□□□□□ -1.9
SSF2	YDR312W	YML119W	Q03208	357 aa		3.18	□□□□□ -1.9
SSF2	YDR312W	MLC2	Q06580	163 aa		3.18	□□□□□ -1.9
SSF2	YDR312W	BSP1	Q06604	576 aa		3.18	□□□□□ -1.9
SSF2	YDR312W	RPO21	P04050	1733 aa	Known RBP	3.18	□□□□□ -1.9
SSF2	YDR312W	MSS18	P08593	268 aa		3.17	□□□□□ -1.9
SSF2	YDR312W	AMD2	P22580	549 aa		3.17	□□□□□ -1.9
SSF2	YDR312W	GDA1	P32621	518 aa		3.17	□□□□□ -1.9
SSF2	YDR312W	ECM32	P32644	1121 aa	Known RBP	3.17	□□□□□ -1.9
SSF2	YDR312W	ARO9	P38840	513 aa	Predicted RBP	3.17	□□□□□ -1.9
SSF2	YDR312W	ARB1	P40024	610 aa	Known RBP	3.17	□□□□□ -1.9
SSF2	YDR312W	SNO3	P43544	222 aa		3.17	□□□□□ -1.9
SSF2	YDR312W	BPL1	P48445	690 aa	Predicted RBP	3.17	□□□□□ -1.9
SSF2	YDR312W	ERG13	P54839	491 aa	Known RBP	3.17	□□□□□ -1.9
SSF2	YDR312W	RSC9	Q03124	581 aa		3.17	□□□□□ -1.9
SSF2	YDR312W	HIM1	Q06674	414 aa		3.17	□□□□□ -1.9
SSF2	YDR312W	BRE1	Q07457	700 aa	Known RBP	3.17	□□□□□ -1.9
SSF2	YDR312W	CRD1	Q07560	283 aa		3.17	□□□□□ -1.9
SSF2	YDR312W	PRS5	Q12265	496 aa	Known RBP	3.17	□□□□□ -1.9
SSF2	YDR312W	RDL1	Q12305	139 aa	Known RBP	3.17	□□□□□ -1.9
SSF2	YDR312W	POL1	P13382	1468 aa		3.17	□□□□□ -1.9
SSF2	YDR312W	GDB1	Q06625	1536 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	DNF3	Q12674	1656 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	CTT1	P06115	562 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	YCR061W	P25639	631 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	YJU2	P28320	278 aa	Predicted RBP	3.16	□□□□□ -1.9
SSF2	YDR312W	PTP2	P29461	750 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	STT3	P39007	718 aa	Known RBP	3.16	□□□□□ -1.9
SSF2	YDR312W	VPS8	P39702	1274 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	SAE2	P46946	345 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	UBP16	Q02863	499 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	RAD33	Q04231	177 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	CRT10	Q08226	957 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	GEP3	Q08622	556 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	ICL2	Q12031	575 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	NYV1	Q12255	253 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	Q0010	Q9ZZX9	128 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	YSP2	Q06681	1438 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	STH1	P32597	1359 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	PDR12	Q02785	1511 aa		3.16	□□□□□ -1.9
SSF2	YDR312W	YEF3	P16521	1044 aa	Known RBP	3.15	□□□□□ -1.9
SSF2	YDR312W	URE2	P23202	354 aa	Known RBP	3.15	□□□□□ -1.9
SSF2	YDR312W	FRD1	P32614	470 aa	Known RBP	3.15	□□□□□ -1.9
SSF2	YDR312W	APM3	P38153	483 aa		3.15	□□□□□ -1.9
SSF2	YDR312W	MTG2	P38860	518 aa		3.15	□□□□□ -1.9
SSF2	YDR312W	YJR008W	P47085	338 aa		3.15	□□□□□ -1.9
SSF2	YDR312W	IDP3	P53982	420 aa	Known RBP	3.15	□□□□□ -1.9
SSF2	YDR312W	VPS64	Q03944	604 aa		3.15	□□□□□ -1.9
SSF2	YDR312W	CRF1	Q04930	467 aa		3.15	□□□□□ -1.9
SSF2	YDR312W	SPN1	Q06505	410 aa	Predicted RBP	3.15	□□□□□ -1.9
SSF2	YDR312W	AIM6	Q07716	390 aa		3.15	□□□□□ -1.9
SSF2	YDR312W	CIR2	Q08822	631 aa		3.15	□□□□□ -1.9
SSF2	YDR312W	AHA1	Q12449	350 aa	Known RBP	3.15	□□□□□ -1.9
SSF2	YDR312W	YLR111W	Q12528	110 aa		3.15	□□□□□ -1.9
SSF2	YDR312W	SNQ2	P32568	1501 aa	Known RBP	3.15	□□□□□ -1.91
SSF2	YDR312W	STU1	P38198	1513 aa		3.15	□□□□□ -1.91
SSF2	YDR312W	TY3B-G	Q99315	1547 aa		3.15	□□□□□ -1.91
SSF2	YDR312W	SIR1	P21691	654 aa		3.14	□□□□□ -1.91
SSF2	YDR312W	YHL041W	P38730	149 aa		3.14	□□□□□ -1.91
SSF2	YDR312W	SPC72	P39723	622 aa		3.14	□□□□□ -1.91
SSF2	YDR312W	NOP2	P40991	618 aa	Known RBP	3.14	□□□□□ -1.91
SSF2	YDR312W	TAN1	P53072	289 aa	Predicted RBP	3.14	□□□□□ -1.91
SSF2	YDR312W	ESF2	P53743	316 aa	Known RBP	3.14	□□□□□ -1.91
SSF2	YDR312W	YPL068C	Q02749	293 aa		3.14	□□□□□ -1.91
SSF2	YDR312W	HRD3	Q05787	833 aa		3.14	□□□□□ -1.91
SSF2	YDR312W	RRP6	Q12149	733 aa	Known RBP	3.14	□□□□□ -1.91
SSF2	YDR312W	YER175W-A	Q8TGU4	54 aa		3.14	□□□□□ -1.91
SSF2	YDR312W	CHO2	P05374	869 aa	Known RBP	3.13	□□□□□ -1.91
SSF2	YDR312W	PIF1	P07271	859 aa		3.13	□□□□□ -1.91
SSF2	YDR312W	POL3	P15436	1097 aa		3.13	□□□□□ -1.91
SSF2	YDR312W	SEC18	P18759	758 aa	Known RBP	3.13	□□□□□ -1.91
SSF2	YDR312W	MCM3	P24279	971 aa	Known RBP	3.13	□□□□□ -1.91
SSF2	YDR312W	SWI4	P25302	1093 aa	Known RBP	3.13	□□□□□ -1.91
SSF2	YDR312W	RRP43	P25359	394 aa	Predicted RBP	3.13	□□□□□ -1.91
SSF2	YDR312W	LNP1	P38878	278 aa		3.13	□□□□□ -1.91
SSF2	YDR312W	MAM1	P40065	302 aa		3.13	□□□□□ -1.91
SSF2	YDR312W	YML053C	Q04978	212 aa		3.13	□□□□□ -1.91
SSF2	YDR312W	EIS1	Q05050	843 aa	Known RBP	3.13	□□□□□ -1.91
SSF2	YDR312W	CYK3	Q07533	885 aa		3.13	□□□□□ -1.91
SSF2	YDR312W	YDL242W	Q07746	117 aa		3.13	□□□□□ -1.91
SSF2	YDR312W	LCB4	Q12246	624 aa		3.13	□□□□□ -1.91
SSF2	YDR312W	ADE3	P07245	946 aa	Known RBP	3.12	□□□□□ -1.91
SSF2	YDR312W	RIT1	P23796	513 aa		3.12	□□□□□ -1.91
SSF2	YDR312W	MSH1	P25846	959 aa		3.12	□□□□□ -1.91
SSF2	YDR312W	SAP1	P39955	897 aa	Known RBP	3.12	□□□□□ -1.91
SSF2	YDR312W	MNT3	P40549	630 aa		3.12	□□□□□ -1.91
SSF2	YDR312W	COG2	P53271	262 aa		3.12	□□□□□ -1.91
SSF2	YDR312W	TPO3	Q06451	622 aa		3.12	□□□□□ -1.91
SSF2	YDR312W	IWR1	Q07532	353 aa	Predicted RBP	3.12	□□□□□ -1.91
SSF2	YDR312W	BUD3	P25558	1636 aa		3.12	□□□□□ -1.91
SSF2	YDR312W	BI2	P03873	423 aa		3.12	□□□□□ -1.91
SSF2	YDR312W	APA1	P16550	321 aa	Known RBP	3.12	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 34.8 ms