RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Cdh23Q99PF4 3354 aa6.57□□□□□ -1.36
Trim56-201ENSMUST00000054384 Frem2Q6NVD0 3160 aa6.55□□□□□ -1.36
Trim56-201ENSMUST00000054384 Celsr3Q91ZI0 3301 aa6.54□□□□□ -1.36
Trim56-201ENSMUST00000054384 FlncQ8VHX6 2726 aaKnown RBP6.54□□□□□ -1.36
Trim56-201ENSMUST00000054384 Pdzd2E9Q1M1 2796 aa6.53□□□□□ -1.36
Trim56-201ENSMUST00000054384 LrbaQ9ESE1 2856 aa6.51□□□□□ -1.37
Trim56-201ENSMUST00000054384 Dmxl2Q8BPN8 3032 aa6.5□□□□□ -1.37
Trim56-201ENSMUST00000054384 Tenm1Q9WTS4 2731 aa6.5□□□□□ -1.37
Trim56-201ENSMUST00000054384 Krtap10-10A0A1W2P7T6 217 aa6.49□□□□□ -1.37
Trim56-201ENSMUST00000054384 NbeaQ9EPN1 2936 aa6.48□□□□□ -1.37
Trim56-201ENSMUST00000054384 AspmQ8CJ27 3122 aa6.47□□□□□ -1.37
Trim56-201ENSMUST00000054384 Chd9Q8BYH8 2885 aa6.46□□□□□ -1.38
Trim56-201ENSMUST00000054384 Lama1P19137 3084 aa6.46□□□□□ -1.38
Trim56-201ENSMUST00000054384 Nf1Q04690 2841 aa6.42□□□□□ -1.38
Trim56-201ENSMUST00000054384 Trank1Q8BV79 2999 aa6.42□□□□□ -1.38
Trim56-201ENSMUST00000054384 Celsr2Q9R0M0 2920 aa6.4□□□□□ -1.38
Trim56-201ENSMUST00000054384 Gm20537G3UYK7 97 aa6.4□□□□□ -1.38
Trim56-201ENSMUST00000054384 Adgrg4B7ZCC9 3073 aa6.4□□□□□ -1.39
Trim56-201ENSMUST00000054384 2310057N15RikQ9D6T8 200 aa6.36□□□□□ -1.39
Trim56-201ENSMUST00000054384 Gm5965D3Z724 196 aa6.36□□□□□ -1.39
Trim56-201ENSMUST00000054384 B930094E09RikQ8C4T2 136 aa6.33□□□□□ -1.4
Trim56-201ENSMUST00000054384 Gm2696A0A1W2P709 240 aa6.33□□□□□ -1.4
Trim56-201ENSMUST00000054384 Vps13cQ8BX70 3748 aa6.25□□□□□ -1.41
Trim56-201ENSMUST00000054384 Akap9Q70FJ1 3797 aa6.25□□□□□ -1.41
Trim56-201ENSMUST00000054384 Brca2P97929 3329 aa6.23□□□□□ -1.41
Trim56-201ENSMUST00000054384 Myo15aQ9QZZ4 3511 aa6.23□□□□□ -1.41
Trim56-201ENSMUST00000054384 Tenm4Q3UHK6 2771 aa6.22□□□□□ -1.41
Trim56-201ENSMUST00000054384 Lrrc37aB1AWG4 3215 aa6.22□□□□□ -1.41
Trim56-201ENSMUST00000054384 Szt2A2A9C3 3431 aa6.19□□□□□ -1.42
Trim56-201ENSMUST00000054384 Tenm3Q9WTS6 2715 aa6.18□□□□□ -1.42
Trim56-201ENSMUST00000054384 Megf8P60882 2789 aa6.18□□□□□ -1.42
Trim56-201ENSMUST00000054384 Dchs2A0A0A6YW72 3346 aa6.16□□□□□ -1.42
Trim56-201ENSMUST00000054384 A930033H14RikG5E8X6 103 aa6.15□□□□□ -1.43
Trim56-201ENSMUST00000054384 Prm2P07978 107 aa6.11□□□□□ -1.43
Trim56-201ENSMUST00000054384 2310079G19RikQ9D6L6 185 aa6.09□□□□□ -1.43
Trim56-201ENSMUST00000054384 SpegQ62407 3262 aa6.07□□□□□ -1.44
Trim56-201ENSMUST00000054384 Col6a3E9PWQ3 3284 aa6.07□□□□□ -1.44
Trim56-201ENSMUST00000054384 VwfQ8CIZ8 2813 aa6.01□□□□□ -1.45
Trim56-201ENSMUST00000054384 Gm17416Q30KP4 66 aa6.01□□□□□ -1.45
Trim56-201ENSMUST00000054384 Gm17402F6Z0L5 76 aa6□□□□□ -1.45
Trim56-201ENSMUST00000054384 DmdP11531 3678 aa5.97□□□□□ -1.45
Trim56-201ENSMUST00000054384 Helz2E9QAM5 2947 aaKnown RBP5.97□□□□□ -1.45
Trim56-201ENSMUST00000054384 Dchs1E9PVD3 3291 aa5.96□□□□□ -1.46
Trim56-201ENSMUST00000054384 VcanQ62059 3357 aa5.95□□□□□ -1.46
Trim56-201ENSMUST00000054384 OtogO55225 2910 aa5.92□□□□□ -1.46
Trim56-201ENSMUST00000054384 Gm9918Q8BUR5 174 aa5.9□□□□□ -1.47
Trim56-201ENSMUST00000054384 4933428G20RikQ9D3X4 101 aa5.89□□□□□ -1.47
Trim56-201ENSMUST00000054384 2210017I01RikA0A0A6YVV1 95 aa5.89□□□□□ -1.47
Trim56-201ENSMUST00000054384 Ank2Q8C8R3 3898 aa5.87□□□□□ -1.47
Trim56-201ENSMUST00000054384 Tenm2Q9WTS5 2764 aa5.86□□□□□ -1.47
Trim56-201ENSMUST00000054384 Smg1Q8BKX6 3658 aaKnown RBP5.82□□□□□ -1.48
Trim56-201ENSMUST00000054384 Gm19668J3QMD1 248 aa5.81□□□□□ -1.48
Trim56-201ENSMUST00000054384 Csmd1Q923L3 3564 aa5.81□□□□□ -1.48
Trim56-201ENSMUST00000054384 Gm9736A0A1W2P7N1 277 aa5.79□□□□□ -1.48
Trim56-201ENSMUST00000054384 Cmya5Q70KF4 3739 aa5.79□□□□□ -1.48
Trim56-201ENSMUST00000054384 Wdfy3Q6VNB8 3508 aa5.77□□□□□ -1.49
Trim56-201ENSMUST00000054384 SpenQ62504 3644 aaKnown RBP5.76□□□□□ -1.49
Trim56-201ENSMUST00000054384 Muc5acE9QAQ8 3455 aa5.74□□□□□ -1.49
Trim56-201ENSMUST00000054384 RelnQ60841 3461 aa5.73□□□□□ -1.49
Trim56-201ENSMUST00000054384 Fbn1Q61554 2873 aaKnown RBP5.71□□□□□ -1.49
Trim56-201ENSMUST00000054384 Lama5Q61001 3718 aa5.69□□□□□ -1.5
Trim56-201ENSMUST00000054384 Zfhx4Q9JJN2 3550 aa5.68□□□□□ -1.5
Trim56-201ENSMUST00000054384 Col7a1Q63870 2944 aa5.62□□□□□ -1.51
Trim56-201ENSMUST00000054384 Gm10318A0A1W2P728 225 aa5.56□□□□□ -1.52
Trim56-201ENSMUST00000054384 Krtap13-1Q8K198 168 aa5.53□□□□□ -1.52
Trim56-201ENSMUST00000054384 Gm884A2A9H6 3643 aa5.5□□□□□ -1.53
Trim56-201ENSMUST00000054384 Csmd2V9GX34 3611 aa5.49□□□□□ -1.53
Trim56-201ENSMUST00000054384 Gm11939A2A592 99 aa5.47□□□□□ -1.53
Trim56-201ENSMUST00000054384 Crct1Q6PAI5 102 aa5.45□□□□□ -1.54
Trim56-201ENSMUST00000054384 BsnO88737 3942 aa5.37□□□□□ -1.55
Trim56-201ENSMUST00000054384 Krtap3-1A2A591 98 aa5.37□□□□□ -1.55
Trim56-201ENSMUST00000054384 Krtap19-5O08632 62 aa5.37□□□□□ -1.55
Trim56-201ENSMUST00000054384 Muc6Q80T03 2850 aa5.35□□□□□ -1.55
Trim56-201ENSMUST00000054384 Gm6358A0A087WPH4 74 aa5.34□□□□□ -1.56
Trim56-201ENSMUST00000054384 LystP97412 3788 aa5.28□□□□□ -1.56
Trim56-201ENSMUST00000054384 Krtap3-2Q9D638 99 aa5.24□□□□□ -1.57
Trim56-201ENSMUST00000054384 Krtap3-3Q9D7P0 99 aa5.24□□□□□ -1.57
Trim56-201ENSMUST00000054384 Svep1A2AVA0 3567 aa5.19□□□□□ -1.58
Trim56-201ENSMUST00000054384 Csmd3Q80T79 3707 aa5.18□□□□□ -1.58
Trim56-201ENSMUST00000054384 Xirp2Q4U4S6 3784 aa5.18□□□□□ -1.58
Trim56-201ENSMUST00000054384 Muc4Q8JZM8 3443 aa5.15□□□□□ -1.59
Trim56-201ENSMUST00000054384 Krtap7-1Q9D3I6 87 aa5.11□□□□□ -1.59
Trim56-201ENSMUST00000054384 Krtap19-9aF8WH65 55 aa5.1□□□□□ -1.59
Trim56-201ENSMUST00000054384 Krtap8-1O08633 61 aa5.09□□□□□ -1.59
Trim56-201ENSMUST00000054384 Hspg2Q05793 3707 aaKnown RBP5.09□□□□□ -1.6
Trim56-201ENSMUST00000054384 Sprr2a3Q4KL71 83 aa5.05□□□□□ -1.6
Trim56-201ENSMUST00000054384 Sprr2a1Q9CQK8 83 aa5.05□□□□□ -1.6
Trim56-201ENSMUST00000054384 Krtap1-5A2A590 122 aa5.04□□□□□ -1.6
Trim56-201ENSMUST00000054384 Sprr2kO70562 68 aa5.01□□□□□ -1.61
Trim56-201ENSMUST00000054384 Gm18596A0A1W2P860 280 aa4.99□□□□□ -1.61
Trim56-201ENSMUST00000054384 Krtap19-9bQ99NG9 58 aa4.98□□□□□ -1.61
Trim56-201ENSMUST00000054384 CubnQ9JLB4 3623 aa4.92□□□□□ -1.62
Trim56-201ENSMUST00000054384 Krtap1-4Q3V2D6 188 aa4.88□□□□□ -1.63
Trim56-201ENSMUST00000054384 Dnah7bL7N1Y0 4068 aa4.87□□□□□ -1.63
Trim56-201ENSMUST00000054384 Gm19402J3QJV4 266 aa4.86□□□□□ -1.63
Trim56-201ENSMUST00000054384 Krtap12-1Q9Z287 130 aa4.85□□□□□ -1.63
Trim56-201ENSMUST00000054384 Dnah3Q8BW94 4083 aa4.81□□□□□ -1.64
Trim56-201ENSMUST00000054384 Huwe1Q7TMY8 4377 aaKnown RBP4.8□□□□□ -1.64
Trim56-201ENSMUST00000054384 Sprr2gO70558 76 aa4.8□□□□□ -1.64
Trim56-201ENSMUST00000054384 Dnah7cA0A087WR13 4024 aa4.76□□□□□ -1.65
Retrieved 100 of 22,080 RNA–protein pairs in 53.1 ms