Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Gm25239-201ENSMUST00000174915 86 ntBASIC42.47■■■■■ 4.39
Col6a3E9PWQ3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39.77■■■■□ 3.96
Col6a3E9PWQ3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.98■■■■□ 3.83
Col6a3E9PWQ3 Gm24109-201ENSMUST00000175489 103 ntBASIC37.6■■■■□ 3.61
Col6a3E9PWQ3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC36.29■■■■□ 3.4
Col6a3E9PWQ3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC36.06■■■■□ 3.36
Col6a3E9PWQ3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.82■■■■□ 3.33
Col6a3E9PWQ3 Gm15042-201ENSMUST00000120212 883 ntBASIC35.76■■■■□ 3.32
Col6a3E9PWQ3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
Col6a3E9PWQ3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35.36■■■■□ 3.25
Col6a3E9PWQ3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
Col6a3E9PWQ3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.19■■■■□ 3.22
Col6a3E9PWQ3 Gm23366-201ENSMUST00000175022 89 ntBASIC35.15■■■■□ 3.22
Col6a3E9PWQ3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35.08■■■■□ 3.21
Col6a3E9PWQ3 Gm15045-201ENSMUST00000117359 883 ntBASIC35.05■■■■□ 3.2
Col6a3E9PWQ3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC34.98■■■■□ 3.19
Col6a3E9PWQ3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC34.18■■■■□ 3.06
Col6a3E9PWQ3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
Col6a3E9PWQ3 Gm25238-201ENSMUST00000174914 89 ntBASIC34.03■■■■□ 3.04
Col6a3E9PWQ3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
Col6a3E9PWQ3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
Col6a3E9PWQ3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.36■■■□□ 2.93
Col6a3E9PWQ3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
Col6a3E9PWQ3 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC33.3■■■□□ 2.92
Col6a3E9PWQ3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33.27■■■□□ 2.92
Col6a3E9PWQ3 Gm25262-201ENSMUST00000174934 133 ntBASIC33.26■■■□□ 2.92
Col6a3E9PWQ3 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC33.2■■■□□ 2.91
Col6a3E9PWQ3 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32.87■■■□□ 2.85
Col6a3E9PWQ3 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32.81■■■□□ 2.84
Col6a3E9PWQ3 Gm26115-201ENSMUST00000175605 87 ntBASIC32.81■■■□□ 2.84
Col6a3E9PWQ3 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32.7■■■□□ 2.83
Col6a3E9PWQ3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.66■■■□□ 2.82
Col6a3E9PWQ3 Gm8109-201ENSMUST00000194076 746 ntBASIC32.46■■■□□ 2.79
Col6a3E9PWQ3 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
Col6a3E9PWQ3 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC32.33■■■□□ 2.77
Col6a3E9PWQ3 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
Col6a3E9PWQ3 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Col6a3E9PWQ3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.15■■■□□ 2.74
Col6a3E9PWQ3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.9■■■□□ 2.7
Col6a3E9PWQ3 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.65■■■□□ 2.66
Col6a3E9PWQ3 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Col6a3E9PWQ3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
Col6a3E9PWQ3 Rab21-202ENSMUST00000218831 843 ntBASIC31.48■■■□□ 2.63
Col6a3E9PWQ3 Gm24804-201ENSMUST00000174982 85 ntBASIC31.46■■■□□ 2.63
Col6a3E9PWQ3 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC31.43■■■□□ 2.62
Col6a3E9PWQ3 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC31.36■■■□□ 2.61
Col6a3E9PWQ3 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Col6a3E9PWQ3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Col6a3E9PWQ3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Col6a3E9PWQ3 Gm27325-201ENSMUST00000175467 74 ntBASIC31.32■■■□□ 2.6
Col6a3E9PWQ3 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Col6a3E9PWQ3 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Col6a3E9PWQ3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Col6a3E9PWQ3 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
Col6a3E9PWQ3 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.15■■■□□ 2.58
Col6a3E9PWQ3 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC31.11■■■□□ 2.57
Col6a3E9PWQ3 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
Col6a3E9PWQ3 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Col6a3E9PWQ3 Zfp131-205ENSMUST00000223812 663 ntBASIC31.02■■■□□ 2.56
Col6a3E9PWQ3 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Col6a3E9PWQ3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Col6a3E9PWQ3 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Col6a3E9PWQ3 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Col6a3E9PWQ3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30.92■■■□□ 2.54
Col6a3E9PWQ3 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Col6a3E9PWQ3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.9■■■□□ 2.54
Col6a3E9PWQ3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.81■■■□□ 2.52
Col6a3E9PWQ3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
Col6a3E9PWQ3 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC30.76■■■□□ 2.52
Col6a3E9PWQ3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Col6a3E9PWQ3 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC30.71■■■□□ 2.51
Col6a3E9PWQ3 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.69■■■□□ 2.5
Col6a3E9PWQ3 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Col6a3E9PWQ3 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30.62■■■□□ 2.49
Col6a3E9PWQ3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Col6a3E9PWQ3 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Col6a3E9PWQ3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC30.5■■■□□ 2.47
Col6a3E9PWQ3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Col6a3E9PWQ3 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Col6a3E9PWQ3 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.46
Col6a3E9PWQ3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Col6a3E9PWQ3 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC30.35■■■□□ 2.45
Col6a3E9PWQ3 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30.35■■■□□ 2.45
Col6a3E9PWQ3 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Col6a3E9PWQ3 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC30.3■■■□□ 2.44
Col6a3E9PWQ3 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Col6a3E9PWQ3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.21■■■□□ 2.43
Col6a3E9PWQ3 Gm5987-201ENSMUST00000196433 1151 ntBASIC30.21■■■□□ 2.43
Col6a3E9PWQ3 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Col6a3E9PWQ3 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.18■■■□□ 2.42
Col6a3E9PWQ3 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC30.17■■■□□ 2.42
Col6a3E9PWQ3 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC30.14■■■□□ 2.42
Col6a3E9PWQ3 Gm27322-201ENSMUST00000184007 104 ntBASIC30.13■■■□□ 2.41
Col6a3E9PWQ3 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Col6a3E9PWQ3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.1■■■□□ 2.41
Col6a3E9PWQ3 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Col6a3E9PWQ3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Col6a3E9PWQ3 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Col6a3E9PWQ3 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
Col6a3E9PWQ3 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC30.02■■■□□ 2.4
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms