Protein–RNA interactions for Protein: Q99PF4

Cdh23, Cadherin-23, mousemouse

Predictions only

Length 3,354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh23Q99PF4 Gm25239-201ENSMUST00000174915 86 ntBASIC42.11■■■■■ 4.33
Cdh23Q99PF4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39.19■■■■□ 3.86
Cdh23Q99PF4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.41■■■■□ 3.74
Cdh23Q99PF4 Gm24109-201ENSMUST00000175489 103 ntBASIC37.03■■■■□ 3.52
Cdh23Q99PF4 Gm15042-201ENSMUST00000120212 883 ntBASIC35.9■■■■□ 3.34
Cdh23Q99PF4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.7■■■■□ 3.3
Cdh23Q99PF4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC35.66■■■■□ 3.3
Cdh23Q99PF4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.29■■■■□ 3.24
Cdh23Q99PF4 Gm15045-201ENSMUST00000117359 883 ntBASIC35.25■■■■□ 3.23
Cdh23Q99PF4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
Cdh23Q99PF4 Gm23366-201ENSMUST00000175022 89 ntBASIC34.89■■■■□ 3.18
Cdh23Q99PF4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.66■■■■□ 3.14
Cdh23Q99PF4 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC34.54■■■■□ 3.12
Cdh23Q99PF4 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
Cdh23Q99PF4 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
Cdh23Q99PF4 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC34.27■■■■□ 3.08
Cdh23Q99PF4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
Cdh23Q99PF4 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.62■■■□□ 2.97
Cdh23Q99PF4 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
Cdh23Q99PF4 Gm25238-201ENSMUST00000174914 89 ntBASIC33.57■■■□□ 2.96
Cdh23Q99PF4 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
Cdh23Q99PF4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.35■■■□□ 2.93
Cdh23Q99PF4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
Cdh23Q99PF4 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.87■■■□□ 2.85
Cdh23Q99PF4 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
Cdh23Q99PF4 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.68■■■□□ 2.82
Cdh23Q99PF4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Cdh23Q99PF4 Gm25262-201ENSMUST00000174934 133 ntBASIC32.55■■■□□ 2.8
Cdh23Q99PF4 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.3■■■□□ 2.76
Cdh23Q99PF4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
Cdh23Q99PF4 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32.16■■■□□ 2.74
Cdh23Q99PF4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
Cdh23Q99PF4 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32.11■■■□□ 2.73
Cdh23Q99PF4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC32.11■■■□□ 2.73
Cdh23Q99PF4 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.04■■■□□ 2.72
Cdh23Q99PF4 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32.01■■■□□ 2.71
Cdh23Q99PF4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Cdh23Q99PF4 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.91■■■□□ 2.7
Cdh23Q99PF4 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Cdh23Q99PF4 Gm26115-201ENSMUST00000175605 87 ntBASIC31.91■■■□□ 2.7
Cdh23Q99PF4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
Cdh23Q99PF4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
Cdh23Q99PF4 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.72■■■□□ 2.67
Cdh23Q99PF4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Cdh23Q99PF4 Gm8109-201ENSMUST00000194076 746 ntBASIC31.66■■■□□ 2.66
Cdh23Q99PF4 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Cdh23Q99PF4 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
Cdh23Q99PF4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC31.56■■■□□ 2.64
Cdh23Q99PF4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC31.53■■■□□ 2.64
Cdh23Q99PF4 Gm27325-201ENSMUST00000175467 74 ntBASIC31.49■■■□□ 2.63
Cdh23Q99PF4 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Cdh23Q99PF4 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.44■■■□□ 2.62
Cdh23Q99PF4 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31.36■■■□□ 2.61
Cdh23Q99PF4 Rab21-202ENSMUST00000218831 843 ntBASIC31.36■■■□□ 2.61
Cdh23Q99PF4 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Cdh23Q99PF4 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
Cdh23Q99PF4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Cdh23Q99PF4 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.06■■■□□ 2.56
Cdh23Q99PF4 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31■■■□□ 2.55
Cdh23Q99PF4 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.98■■■□□ 2.55
Cdh23Q99PF4 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Cdh23Q99PF4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
Cdh23Q99PF4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Cdh23Q99PF4 Gm24804-201ENSMUST00000174982 85 ntBASIC30.75■■■□□ 2.51
Cdh23Q99PF4 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Cdh23Q99PF4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
Cdh23Q99PF4 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Cdh23Q99PF4 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Cdh23Q99PF4 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.62■■■□□ 2.49
Cdh23Q99PF4 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.56■■■□□ 2.48
Cdh23Q99PF4 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
Cdh23Q99PF4 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Cdh23Q99PF4 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Cdh23Q99PF4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30.49■■■□□ 2.47
Cdh23Q99PF4 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.45■■■□□ 2.46
Cdh23Q99PF4 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
Cdh23Q99PF4 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC30.33■■■□□ 2.45
Cdh23Q99PF4 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC30.27■■■□□ 2.44
Cdh23Q99PF4 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC30.25■■■□□ 2.43
Cdh23Q99PF4 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30.23■■■□□ 2.43
Cdh23Q99PF4 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
Cdh23Q99PF4 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC30.2■■■□□ 2.43
Cdh23Q99PF4 Zfp131-205ENSMUST00000223812 663 ntBASIC30.19■■■□□ 2.42
Cdh23Q99PF4 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Cdh23Q99PF4 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30.16■■■□□ 2.42
Cdh23Q99PF4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
Cdh23Q99PF4 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Cdh23Q99PF4 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Cdh23Q99PF4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC30.1■■■□□ 2.41
Cdh23Q99PF4 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Cdh23Q99PF4 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Cdh23Q99PF4 Psd-208ENSMUST00000224556 2034 ntBASIC30.05■■■□□ 2.4
Cdh23Q99PF4 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Cdh23Q99PF4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.01■■■□□ 2.4
Cdh23Q99PF4 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC29.99■■■□□ 2.39
Cdh23Q99PF4 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Cdh23Q99PF4 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Cdh23Q99PF4 Gm27322-201ENSMUST00000184007 104 ntBASIC29.94■■■□□ 2.38
Cdh23Q99PF4 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Cdh23Q99PF4 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC29.87■■■□□ 2.37
Retrieved 100 of 76,532 protein–RNA pairs in 800 ms