RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Pkhd1E9PZ36 4059 aa9.97□□□□□ -0.81
Ctcf-201ENSMUST00000005841 Krtap29-1A2A5X4 342 aa9.96□□□□□ -0.82
Ctcf-201ENSMUST00000005841 Cypt14J3QPF7 87 aa9.95□□□□□ -0.82
Ctcf-201ENSMUST00000005841 Defb38Q7TNV7 63 aa9.95□□□□□ -0.82
Ctcf-201ENSMUST00000005841 ApobE9Q414 4505 aa9.93□□□□□ -0.82
Ctcf-201ENSMUST00000005841 Nsd1O88491 2588 aaKnown RBP9.93□□□□□ -0.82
Ctcf-201ENSMUST00000005841 Gm10065F6TJM2 114 aa9.92□□□□□ -0.82
Ctcf-201ENSMUST00000005841 Gm7137J3QMW1 236 aa9.92□□□□□ -0.82
Ctcf-201ENSMUST00000005841 Q8K1L6 76 aa9.92□□□□□ -0.82
Ctcf-201ENSMUST00000005841 Stard9Q80TF6 4561 aa9.91□□□□□ -0.82
Ctcf-201ENSMUST00000005841 Gm9821Q8K076 103 aa9.9□□□□□ -0.82
Ctcf-201ENSMUST00000005841 Igkv3-5A0A140T8M6 119 aa9.89□□□□□ -0.83
Ctcf-201ENSMUST00000005841 FasnP19096 2504 aaKnown RBP9.88□□□□□ -0.83
Ctcf-201ENSMUST00000005841 Stab1Q8R4Y4 2571 aa9.85□□□□□ -0.83
Ctcf-201ENSMUST00000005841 Gm9508A0A1W2P7W0 230 aa9.85□□□□□ -0.83
Ctcf-201ENSMUST00000005841 Gm10642Q3TWM1 71 aa9.85□□□□□ -0.83
Ctcf-201ENSMUST00000005841 2310079G19RikQ9D6L6 185 aa9.84□□□□□ -0.83
Ctcf-201ENSMUST00000005841 Fn1P11276 2477 aaKnown RBP9.83□□□□□ -0.84
Ctcf-201ENSMUST00000005841 Tnp2P11378 117 aa9.79□□□□□ -0.84
Ctcf-201ENSMUST00000005841 2310034C09RikQ9D746 214 aa9.79□□□□□ -0.84
Ctcf-201ENSMUST00000005841 Sslp1Q3UN54 99 aa9.78□□□□□ -0.84
Ctcf-201ENSMUST00000005841 Wfdc17Q5SSJ1 76 aa9.77□□□□□ -0.84
Ctcf-201ENSMUST00000005841 Krtap3-2Q9D638 99 aa9.77□□□□□ -0.84
Ctcf-201ENSMUST00000005841 Krtap3-3Q9D7P0 99 aa9.77□□□□□ -0.84
Ctcf-201ENSMUST00000005841 Vps13bQ80TY5 3993 aa9.77□□□□□ -0.85
Ctcf-201ENSMUST00000005841 NbdyA0A0N4SUI7 68 aa9.76□□□□□ -0.85
Ctcf-201ENSMUST00000005841 Pla2g10Q9QXX3 151 aa9.76□□□□□ -0.85
Ctcf-201ENSMUST00000005841 Anapc11Q9CPX9 84 aa9.73□□□□□ -0.85
Ctcf-201ENSMUST00000005841 Defb39Q70KL3 74 aa9.71□□□□□ -0.85
Ctcf-201ENSMUST00000005841 Lrp1bQ9JI18 4599 aa9.69□□□□□ -0.86
Ctcf-201ENSMUST00000005841 Znf706Q9D115 76 aaKnown RBP9.68□□□□□ -0.86
Ctcf-201ENSMUST00000005841 Gm9918Q8BUR5 174 aa9.68□□□□□ -0.86
Ctcf-201ENSMUST00000005841 Krtap13O88375 197 aa9.68□□□□□ -0.86
Ctcf-201ENSMUST00000005841 Igsf10Q3V1M1 2594 aa9.67□□□□□ -0.86
Ctcf-201ENSMUST00000005841 1700012A03RikQ9DAF1 130 aa9.66□□□□□ -0.86
Ctcf-201ENSMUST00000005841 Cypt15B1AXS0 87 aa9.66□□□□□ -0.86
Ctcf-201ENSMUST00000005841 9530053A07RikE9PVG8 2581 aa9.66□□□□□ -0.86
Ctcf-201ENSMUST00000005841 Krtap14O08640 167 aa9.64□□□□□ -0.87
Ctcf-201ENSMUST00000005841 A930033H14RikG5E8X6 103 aa9.64□□□□□ -0.87
Ctcf-201ENSMUST00000005841 Nupr2Q497P3 102 aa9.63□□□□□ -0.87
Ctcf-201ENSMUST00000005841 Q8BGJ3 129 aa9.62□□□□□ -0.87
Ctcf-201ENSMUST00000005841 2310050C09RikG5E8Z3 280 aa9.59□□□□□ -0.87
Ctcf-201ENSMUST00000005841 Pkd1l1Q8R526 2615 aa9.57□□□□□ -0.88
Ctcf-201ENSMUST00000005841 Ndufs5Q99LY9 106 aa9.57□□□□□ -0.88
Ctcf-201ENSMUST00000005841 Fat2Q5F226 4351 aa9.54□□□□□ -0.88
Ctcf-201ENSMUST00000005841 Gpr15lA0A0B4J1N3 78 aa9.53□□□□□ -0.88
Ctcf-201ENSMUST00000005841 Gm17349F7BGH6 99 aa9.52□□□□□ -0.88
Ctcf-201ENSMUST00000005841 SacsQ9JLC8 4582 aa9.51□□□□□ -0.89
Ctcf-201ENSMUST00000005841 Adm2Q7TNK8 150 aa9.51□□□□□ -0.89
Ctcf-201ENSMUST00000005841 Gm4707V9GXN5 68 aa9.51□□□□□ -0.89
Ctcf-201ENSMUST00000005841 Pkhd1l1Q80ZA4 4249 aa9.51□□□□□ -0.89
Ctcf-201ENSMUST00000005841 Stab2Q8R4U0 2559 aa9.5□□□□□ -0.89
Ctcf-201ENSMUST00000005841 Gm10999F6Q4M4 69 aa9.5□□□□□ -0.89
Ctcf-201ENSMUST00000005841 Defb13Q8R2I4 64 aa9.5□□□□□ -0.89
Ctcf-201ENSMUST00000005841 D6Ertd527eA0A0N4SWI3 464 aa9.44□□□□□ -0.9
Ctcf-201ENSMUST00000005841 Gm9507D3Z5T3 223 aa9.4□□□□□ -0.9
Ctcf-201ENSMUST00000005841 Gm12216A0A1W2P827 62 aa9.38□□□□□ -0.91
Ctcf-201ENSMUST00000005841 Gm20537G3UYK7 97 aa9.34□□□□□ -0.92
Ctcf-201ENSMUST00000005841 Defb1P56386 69 aa9.33□□□□□ -0.92
Ctcf-201ENSMUST00000005841 Spaca4Q80ZQ0 127 aa9.33□□□□□ -0.92
Ctcf-201ENSMUST00000005841 1600014C23RikQ9DAX4 101 aa9.27□□□□□ -0.93
Ctcf-201ENSMUST00000005841 Gm11939A2A592 99 aa9.22□□□□□ -0.93
Ctcf-201ENSMUST00000005841 4930507D05RikQ8C9C9 103 aa9.22□□□□□ -0.93
Ctcf-201ENSMUST00000005841 Defb10Q8R2I8 73 aa9.21□□□□□ -0.93
Ctcf-201ENSMUST00000005841 Wfdc3Q14AE4 130 aa9.18□□□□□ -0.94
Ctcf-201ENSMUST00000005841 Fat1A0A1L1SQU7 4645 aa9.17□□□□□ -0.94
Ctcf-201ENSMUST00000005841 Gm4491E0CX42 125 aa9.15□□□□□ -0.95
Ctcf-201ENSMUST00000005841 Krtap10-4Q08EG8 221 aa9.09□□□□□ -0.95
Ctcf-201ENSMUST00000005841 Cox6b2Q80ZN9 88 aa9.09□□□□□ -0.95
Ctcf-201ENSMUST00000005841 Rps29P62274 56 aa9.05□□□□□ -0.96
Ctcf-201ENSMUST00000005841 Romo1P60603 79 aa9.03□□□□□ -0.96
Ctcf-201ENSMUST00000005841 Gm3880A0A1B0GSB3 72 aa9□□□□□ -0.97
Ctcf-201ENSMUST00000005841 FcgbpE9Q0B5 2583 aa8.99□□□□□ -0.97
Ctcf-201ENSMUST00000005841 Dync1h1Q9JHU4 4644 aaKnown RBP8.98□□□□□ -0.97
Ctcf-201ENSMUST00000005841 Gm20538F6Z9R1 75 aa8.96□□□□□ -0.98
Ctcf-201ENSMUST00000005841 Lrp1Q91ZX7 4545 aaKnown RBP8.89□□□□□ -0.99
Ctcf-201ENSMUST00000005841 Mp68P56379 58 aa8.8□□□□□ -1
Ctcf-201ENSMUST00000005841 Krtap10-10A0A1W2P7T6 217 aa8.79□□□□□ -1
Ctcf-201ENSMUST00000005841 Fat3Q8BNA6 4555 aa8.77□□□□□ -1.01
Ctcf-201ENSMUST00000005841 Mycbp2Q7TPH6 4711 aa8.76□□□□□ -1.01
Ctcf-201ENSMUST00000005841 Gm9955Q8CEJ8 102 aa8.76□□□□□ -1.01
Ctcf-201ENSMUST00000005841 Ly6g6cQ9Z1Q4 126 aa8.75□□□□□ -1.01
Ctcf-201ENSMUST00000005841 Gm2696A0A1W2P709 240 aa8.75□□□□□ -1.01
Ctcf-201ENSMUST00000005841 CriptO70333 101 aa8.71□□□□□ -1.01
Ctcf-201ENSMUST00000005841 Gm10382Q3V0T5 144 aa8.69□□□□□ -1.02
Ctcf-201ENSMUST00000005841 Kmt2cQ8BRH4 4903 aa8.69□□□□□ -1.02
Ctcf-201ENSMUST00000005841 Krtap3-1A2A591 98 aa8.64□□□□□ -1.03
Ctcf-201ENSMUST00000005841 Defb11Q8R2I7 77 aa8.64□□□□□ -1.03
Ctcf-201ENSMUST00000005841 Rpl37Q9D823 97 aa8.59□□□□□ -1.03
Ctcf-201ENSMUST00000005841 Prm2P07978 107 aa8.58□□□□□ -1.04
Ctcf-201ENSMUST00000005841 Gm5767A0A0J9YTU8 78 aa8.55□□□□□ -1.04
Ctcf-201ENSMUST00000005841 Dnah8Q91XQ0 4731 aa8.54□□□□□ -1.04
Ctcf-201ENSMUST00000005841 Ryr3A2AGL3 4863 aa8.53□□□□□ -1.04
Ctcf-201ENSMUST00000005841 Gm21887J3QQ04 176 aa8.46□□□□□ -1.06
Ctcf-201ENSMUST00000005841 Gm17416Q30KP4 66 aa8.44□□□□□ -1.06
Ctcf-201ENSMUST00000005841 Rnase13Q5GAM7 153 aa8.41□□□□□ -1.06
Ctcf-201ENSMUST00000005841 Krtap7-1Q9D3I6 87 aa8.4□□□□□ -1.06
Ctcf-201ENSMUST00000005841 RetnlbQ99P86 105 aa8.34□□□□□ -1.08
Ctcf-201ENSMUST00000005841 Gm17606F6ZL36 78 aa8.33□□□□□ -1.08
Ctcf-201ENSMUST00000005841 Abca13Q5SSE9 5034 aa8.31□□□□□ -1.08
Retrieved 100 of 22,080 RNA–protein pairs in 40.7 ms