RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Ubr5Q80TP3 2792 aa10.56□□□□□ -0.72
Ccdc88a-201ENSMUST00000040182 ApcQ61315 2845 aa10.54□□□□□ -0.72
Ccdc88a-201ENSMUST00000040182 6030445D17RikE9Q8F9 148 aa10.53□□□□□ -0.72
Ccdc88a-201ENSMUST00000040182 Spink7Q6IE32 76 aa10.53□□□□□ -0.72
Ccdc88a-201ENSMUST00000040182 Fam229bQ8CF36 80 aa10.52□□□□□ -0.73
Ccdc88a-201ENSMUST00000040182 Gm3880A0A1B0GSB3 72 aa10.52□□□□□ -0.73
Ccdc88a-201ENSMUST00000040182 NbdyA0A0N4SUI7 68 aa10.5□□□□□ -0.73
Ccdc88a-201ENSMUST00000040182 Tex15F8VPN2 2785 aa10.49□□□□□ -0.73
Ccdc88a-201ENSMUST00000040182 Cep350E9Q309 3095 aa10.48□□□□□ -0.73
Ccdc88a-201ENSMUST00000040182 Plac8Q9JI48 112 aa10.47□□□□□ -0.73
Ccdc88a-201ENSMUST00000040182 Prune2Q52KR3 3084 aa10.46□□□□□ -0.73
Ccdc88a-201ENSMUST00000040182 Muc2Q80Z19 2680 aa10.46□□□□□ -0.73
Ccdc88a-201ENSMUST00000040182 Anapc11Q9CPX9 84 aa10.46□□□□□ -0.74
Ccdc88a-201ENSMUST00000040182 Ash1lQ99MY8 2958 aa10.43□□□□□ -0.74
Ccdc88a-201ENSMUST00000040182 Gm4491E0CX42 125 aa10.41□□□□□ -0.74
Ccdc88a-201ENSMUST00000040182 Odf3bQ5M8M2 238 aa10.41□□□□□ -0.74
Ccdc88a-201ENSMUST00000040182 Smim29Q8R043 75 aa10.38□□□□□ -0.75
Ccdc88a-201ENSMUST00000040182 Hivep1Q03172 2688 aa10.33□□□□□ -0.76
Ccdc88a-201ENSMUST00000040182 Fbn2Q61555 2907 aa10.31□□□□□ -0.76
Ccdc88a-201ENSMUST00000040182 Camk2n1Q6QWF9 78 aa10.31□□□□□ -0.76
Ccdc88a-201ENSMUST00000040182 Gm10139O88245 57 aa10.27□□□□□ -0.76
Ccdc88a-201ENSMUST00000040182 MgaA2AWL7 3003 aaKnown RBP10.27□□□□□ -0.77
Ccdc88a-201ENSMUST00000040182 Gm11565A2A4M7 156 aa10.25□□□□□ -0.77
Ccdc88a-201ENSMUST00000040182 Gm3646F6S692 53 aa10.24□□□□□ -0.77
Ccdc88a-201ENSMUST00000040182 Dmxl1Q6PNC0 3013 aa10.24□□□□□ -0.77
Ccdc88a-201ENSMUST00000040182 Gm37013Q8K491 104 aa10.23□□□□□ -0.77
Ccdc88a-201ENSMUST00000040182 Gm3250E9Q1M3 230 aa10.22□□□□□ -0.77
Ccdc88a-201ENSMUST00000040182 Romo1P60603 79 aa10.21□□□□□ -0.77
Ccdc88a-201ENSMUST00000040182 Fam229aB2KGE5 128 aa10.17□□□□□ -0.78
Ccdc88a-201ENSMUST00000040182 Rpl37Q9D823 97 aa10.16□□□□□ -0.78
Ccdc88a-201ENSMUST00000040182 Lama2Q60675 3118 aaKnown RBP10.16□□□□□ -0.78
Ccdc88a-201ENSMUST00000040182 Gm16253D3Z167 63 aa10.16□□□□□ -0.78
Ccdc88a-201ENSMUST00000040182 Srrm2Q8BTI8 2703 aaKnown RBP10.16□□□□□ -0.78
Ccdc88a-201ENSMUST00000040182 Chd7A2AJK6 2986 aaKnown RBP10.15□□□□□ -0.78
Ccdc88a-201ENSMUST00000040182 KalrnA2CG49 2964 aa10.14□□□□□ -0.79
Ccdc88a-201ENSMUST00000040182 Sprr1aQ62266 144 aa10.14□□□□□ -0.79
Ccdc88a-201ENSMUST00000040182 Bod1lE9Q6J5 3032 aa10.12□□□□□ -0.79
Ccdc88a-201ENSMUST00000040182 Zzef1Q5SSH7 2924 aa10.11□□□□□ -0.79
Ccdc88a-201ENSMUST00000040182 Myo15bI7HPW8 3033 aa10.1□□□□□ -0.79
Ccdc88a-201ENSMUST00000040182 1700042G07RikB1AUF7 90 aa10.09□□□□□ -0.79
Ccdc88a-201ENSMUST00000040182 Sec61bQ9CQS8 96 aaKnown RBP10.09□□□□□ -0.79
Ccdc88a-201ENSMUST00000040182 Gm10320E9PW43 113 aa10.09□□□□□ -0.79
Ccdc88a-201ENSMUST00000040182 FrylF8VQ05 3007 aa10.08□□□□□ -0.8
Ccdc88a-201ENSMUST00000040182 UtrnE9Q6R7 3430 aa10.06□□□□□ -0.8
Ccdc88a-201ENSMUST00000040182 FcgbpE9Q0B5 2583 aa10.05□□□□□ -0.8
Ccdc88a-201ENSMUST00000040182 Cystm1Q8K353 104 aa10.05□□□□□ -0.8
Ccdc88a-201ENSMUST00000040182 Krtap15-1Q9QZU5 150 aa10.03□□□□□ -0.8
Ccdc88a-201ENSMUST00000040182 DspE9Q557 2883 aaKnown RBP10.03□□□□□ -0.8
Ccdc88a-201ENSMUST00000040182 Igfn1Q3KNY0 2849 aa10.02□□□□□ -0.8
Ccdc88a-201ENSMUST00000040182 TgO08710 2766 aa10□□□□□ -0.81
Ccdc88a-201ENSMUST00000040182 Gm10382Q3V0T5 144 aa10□□□□□ -0.81
Ccdc88a-201ENSMUST00000040182 Ranbp2Q9ERU9 3053 aaKnown RBP10□□□□□ -0.81
Ccdc88a-201ENSMUST00000040182 BC029722A0A0N4SW31 51 aa9.99□□□□□ -0.81
Ccdc88a-201ENSMUST00000040182 A730071L15RikQ8C4X0 137 aa9.99□□□□□ -0.81
Ccdc88a-201ENSMUST00000040182 FlncQ8VHX6 2726 aaKnown RBP9.96□□□□□ -0.82
Ccdc88a-201ENSMUST00000040182 Krtap29-1A2A5X4 342 aa9.95□□□□□ -0.82
Ccdc88a-201ENSMUST00000040182 4933415A04RikQ9D443 101 aa9.95□□□□□ -0.82
Ccdc88a-201ENSMUST00000040182 Gm5767A0A0J9YTU8 78 aa9.94□□□□□ -0.82
Ccdc88a-201ENSMUST00000040182 Cox6b2Q80ZN9 88 aa9.93□□□□□ -0.82
Ccdc88a-201ENSMUST00000040182 TrioQ0KL02 3102 aa9.9□□□□□ -0.82
Ccdc88a-201ENSMUST00000040182 Pdzd2E9Q1M1 2796 aa9.89□□□□□ -0.83
Ccdc88a-201ENSMUST00000040182 Gm19426M0QWC7 77 aa9.87□□□□□ -0.83
Ccdc88a-201ENSMUST00000040182 Vps13aQ5H8C4 3166 aa9.84□□□□□ -0.83
Ccdc88a-201ENSMUST00000040182 Gm7173A0A0G2JEB6 3132 aa9.83□□□□□ -0.84
Ccdc88a-201ENSMUST00000040182 Rps29P62274 56 aa9.83□□□□□ -0.84
Ccdc88a-201ENSMUST00000040182 Usp34Q6ZQ93 3582 aa9.82□□□□□ -0.84
Ccdc88a-201ENSMUST00000040182 Tenm1Q9WTS4 2731 aa9.81□□□□□ -0.84
Ccdc88a-201ENSMUST00000040182 BptfA2A654 3036 aaKnown RBP9.77□□□□□ -0.85
Ccdc88a-201ENSMUST00000040182 FryE9Q8I9 3020 aa9.77□□□□□ -0.85
Ccdc88a-201ENSMUST00000040182 Nf1Q04690 2841 aa9.76□□□□□ -0.85
Ccdc88a-201ENSMUST00000040182 Gm3233E9Q2H5 230 aa9.7□□□□□ -0.86
Ccdc88a-201ENSMUST00000040182 Rev3lQ61493 3122 aa9.7□□□□□ -0.86
Ccdc88a-201ENSMUST00000040182 Gm2310J3QNJ2 377 aa9.7□□□□□ -0.86
Ccdc88a-201ENSMUST00000040182 Chd9Q8BYH8 2885 aa9.69□□□□□ -0.86
Ccdc88a-201ENSMUST00000040182 Mki67E9PVX6 3177 aaKnown RBP9.68□□□□□ -0.86
Ccdc88a-201ENSMUST00000040182 NbeaQ9EPN1 2936 aa9.66□□□□□ -0.86
Ccdc88a-201ENSMUST00000040182 SmcpP15265 143 aa9.65□□□□□ -0.86
Ccdc88a-201ENSMUST00000040182 Cfap54Q8C6S9 3106 aa9.64□□□□□ -0.87
Ccdc88a-201ENSMUST00000040182 Lama3Q61789 3330 aa9.62□□□□□ -0.87
Ccdc88a-201ENSMUST00000040182 Celsr2Q9R0M0 2920 aa9.6□□□□□ -0.87
Ccdc88a-201ENSMUST00000040182 2310050C09RikG5E8Z3 280 aa9.59□□□□□ -0.87
Ccdc88a-201ENSMUST00000040182 AtmQ62388 3066 aa9.59□□□□□ -0.87
Ccdc88a-201ENSMUST00000040182 Gm17349F7BGH6 99 aa9.58□□□□□ -0.88
Ccdc88a-201ENSMUST00000040182 Wdfy4E9Q2M9 3149 aa9.57□□□□□ -0.88
Ccdc88a-201ENSMUST00000040182 Gm7138L7N2C3 230 aa9.56□□□□□ -0.88
Ccdc88a-201ENSMUST00000040182 Lelp1Q9DAE3 120 aa9.56□□□□□ -0.88
Ccdc88a-201ENSMUST00000040182 Gm3238W4VSP7 230 aa9.56□□□□□ -0.88
Ccdc88a-201ENSMUST00000040182 Gm40193A0A1B0GT39 78 aa9.56□□□□□ -0.88
Ccdc88a-201ENSMUST00000040182 LrbaQ9ESE1 2856 aa9.53□□□□□ -0.88
Ccdc88a-201ENSMUST00000040182 Col12a1Q60847 3120 aa9.52□□□□□ -0.88
Ccdc88a-201ENSMUST00000040182 Celsr1O35161 3034 aa9.48□□□□□ -0.89
Ccdc88a-201ENSMUST00000040182 Trank1Q8BV79 2999 aa9.47□□□□□ -0.89
Ccdc88a-201ENSMUST00000040182 Ndufaf8A2AMZ4 74 aa9.44□□□□□ -0.9
Ccdc88a-201ENSMUST00000040182 HttP42859 3119 aa9.43□□□□□ -0.9
Ccdc88a-201ENSMUST00000040182 Tenm3Q9WTS6 2715 aa9.41□□□□□ -0.9
Ccdc88a-201ENSMUST00000040182 AspmQ8CJ27 3122 aa9.41□□□□□ -0.9
Ccdc88a-201ENSMUST00000040182 Gm7137J3QMW1 236 aa9.4□□□□□ -0.9
Ccdc88a-201ENSMUST00000040182 Gm9508A0A1W2P7W0 230 aa9.38□□□□□ -0.91
Ccdc88a-201ENSMUST00000040182 Tnp1P10856 55 aa9.36□□□□□ -0.91
Ccdc88a-201ENSMUST00000040182 Tnp2P11378 117 aa9.35□□□□□ -0.91
Retrieved 100 of 22,080 RNA–protein pairs in 50.7 ms