RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 MplkipQ9D011 178 aa9.57□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Srsf2Q62093 221 aaKnown RBP9.57□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Q9D8Q6 235 aa9.56□□□□□ -0.88
Clcn3-201ENSMUST00000004430 P01820 115 aa9.56□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Cfap126Q6P8X9 189 aa9.56□□□□□ -0.88
Clcn3-201ENSMUST00000004430 P84751 237 aa9.55□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Ighv1-52A0A0A6YXC3 117 aa9.55□□□□□ -0.88
Clcn3-201ENSMUST00000004430 LhbO09108 141 aa9.55□□□□□ -0.88
Clcn3-201ENSMUST00000004430 MalO09198 153 aa9.55□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Lmo4P61969 165 aa9.55□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Gm5089A1L3C8 106 aa9.54□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Fam222aQ6PGH4 453 aa9.54□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Wdr38Q9D994 303 aa9.54□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Gm16381A0A1Y7VKT9 73 aa9.54□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Lst1O08843 95 aa9.54□□□□□ -0.88
Clcn3-201ENSMUST00000004430 E130218I03RikA0A0U1RNU5 63 aa9.54□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Crip3Q6Q6R3 243 aa9.54□□□□□ -0.88
Clcn3-201ENSMUST00000004430 BB014433Q8C5R5 389 aa9.54□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Atp6v0e2Q91XE7 81 aa9.54□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Igkv1-35A0A0G2JDE5 120 aa9.53□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Ang3P97802 145 aa9.53□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Gm9936Q8C864 160 aa9.53□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Ighv8-5A0A0A6YY60 119 aa9.53□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Taf15Q8BQ46 557 aaKnown RBP9.53□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Nop10Q9CQS2 64 aa9.53□□□□□ -0.88
Clcn3-201ENSMUST00000004430 Odf1Q61999 247 aa9.52□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Hcfc1Q61191 2045 aaKnown RBP9.52□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Akap9Q70FJ1 3797 aa9.52□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Ighv5-9-1A0A0A6YVS4 126 aa9.52□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Ifitm1Q9D103 106 aa9.52□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Igkv1-99F6XWB2 120 aa9.51□□□□□ -0.89
Clcn3-201ENSMUST00000004430 1700056E22RikF7CNM6 234 aa9.51□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Leap2Q91V13 76 aa9.51□□□□□ -0.89
Clcn3-201ENSMUST00000004430 SpenQ62504 3644 aaKnown RBP9.51□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Trbv16A0A0B4J1H3 115 aa9.51□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Smim26Q3V460 107 aa9.51□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Trav13-4-dv7A0A075B6C2 110 aa9.51□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Scgb1b2O35176 93 aa9.51□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Mfap4Q9D1H9 257 aa9.51□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Pla2g2dQ9WVF6 144 aa9.51□□□□□ -0.89
Clcn3-201ENSMUST00000004430 B230359F08RikA0A0B4J1K3 109 aa9.5□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Cox8cA6H666 72 aa9.5□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Ighv1-72P01751 139 aa9.5□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Igkv4-68A0A0B4J1I7 117 aa9.5□□□□□ -0.89
Clcn3-201ENSMUST00000004430 B230307C23RikQ8BLB2 64 aa9.5□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Spry2Q9QXV8 315 aa9.5□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Trav13n-2A0A0G2JF93 110 aa9.49□□□□□ -0.89
Clcn3-201ENSMUST00000004430 P01802 115 aa9.49□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Zfp462B1AWL2 2495 aaKnown RBP9.49□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Igkv4-53A0A0G2JFC6 119 aa9.49□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Cox7a1P56392 80 aa9.49□□□□□ -0.89
Clcn3-201ENSMUST00000004430 4930442H23RikQ9D5G7 103 aa9.49□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Trav13-1A0A075B644 110 aa9.49□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Mzt1Q8BUR9 78 aa9.49□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Ighv1-75A0A075B5Y2 117 aa9.48□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Polr2kQ63871 58 aa9.48□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Crip2Q9DCT8 208 aaKnown RBP9.48□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Igkv4-59A0A0B4J1I8 117 aa9.48□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Tcte2E9PY37 120 aa9.48□□□□□ -0.89
Clcn3-201ENSMUST00000004430 PemtQ61907 199 aa9.48□□□□□ -0.89
Clcn3-201ENSMUST00000004430 1520401A03RikA0A0J9YVH6 598 aa9.47□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Socs3O35718 225 aa9.47□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Erdr1J3QMM0 206 aa9.47□□□□□ -0.89
Clcn3-201ENSMUST00000004430 4930470P17RikQ9D542 155 aa9.47□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Ighv2-3A0A075B696 115 aa9.47□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Sh2d1aO88890 126 aa9.47□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Pglyrp4Q0VB07 374 aa9.47□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Tmem86bQ497J1 226 aa9.47□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Gm28539A0A087WSL9 92 aa9.46□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Trav13d-4A0A0G2JFX3 110 aa9.46□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Ube2d1P61080 147 aaKnown RBP9.46□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Ly6hQ9WUC3 139 aa9.46□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Ankrd11E9Q4F7 2643 aa9.46□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Sprr3O09116 238 aa9.46□□□□□ -0.89
Clcn3-201ENSMUST00000004430 Ighv12-3A0A075B5T1 117 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Trav4d-3A0A075B625 110 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Gm10135F6TEE5 83 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 CnfnQ6PCW6 111 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Pip4p1Q3TWL2 284 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Trav13-2A0A075B649 110 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Igkv8-16A0A0G2JDG9 121 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Gm37988J3QM41 62 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Ighv1-66A0A075B5X5 117 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Tmem243B2RVB9 118 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Defa27F2Z403 93 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 AngP21570 145 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Vmo1Q5SXG7 201 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Crlf1Q9JM58 425 aa9.45□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Lamtor3O88653 124 aa9.44□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Trav14d-3-dv8A0A075B619 120 aa9.44□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Igkv8-24A0A140T8P5 121 aa9.44□□□□□ -0.9
Clcn3-201ENSMUST00000004430 CdsnQ7TPC1 561 aa9.44□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Gcn1E9PVA8 2671 aaKnown RBP9.43□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Ighv1-85A0A075B5Y6 117 aa9.43□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Pglyrp1O88593 182 aa9.43□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Igf1P05017 153 aa9.43□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Morn3Q8C5T4 241 aa9.43□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Cdip1Q9DB75 208 aa9.43□□□□□ -0.9
Clcn3-201ENSMUST00000004430 MifP34884 115 aaKnown RBP9.43□□□□□ -0.9
Clcn3-201ENSMUST00000004430 Lage3Q9CR70 148 aa9.43□□□□□ -0.9
Retrieved 100 of 22,080 RNA–protein pairs in 79.3 ms