RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	DAL81	P21657	970 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	PTP1	P25044	335 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	RER1	P25560	188 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	YCR016W	P25617	290 aa	Known RBP	5.12	□□□□□ -1.59
SEC39	YLR440C	SIN4	P32259	974 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	SMC1	P32908	1225 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	YKR015C	P36111	568 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	LAS1	P36146	502 aa	Predicted RBP	5.12	□□□□□ -1.59
SEC39	YLR440C	RFC3	P38629	340 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	AIM9	P40053	627 aa	Known RBP	5.12	□□□□□ -1.59
SEC39	YLR440C	NAS2	P40555	220 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	RMR1	P53060	241 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	PGA2	P53903	129 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	PRO2	P54885	456 aa	Known RBP	5.12	□□□□□ -1.59
SEC39	YLR440C	SPP1	Q03012	353 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	VPS64	Q03944	604 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	RPN9	Q04062	393 aa	Known RBP	5.12	□□□□□ -1.59
SEC39	YLR440C	ARA2	Q04212	335 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	BCP1	Q06338	283 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	MLC2	Q06580	163 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	SNA4	Q07549	140 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	MSH5	Q12175	901 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	FRE6	Q12473	712 aa		5.12	□□□□□ -1.59
SEC39	YLR440C	PAR32	Q12515	295 aa	Known RBP	5.12	□□□□□ -1.59
SEC39	YLR440C	MHP1	P43638	1398 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	MATALPHA2	P0CY08	210 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	HMLALPHA2	P0CY09	210 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	CDC42	P19073	191 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	AFT1	P22149	690 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	AFG2	P32794	780 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	GYP6	P32806	458 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	ERT1	P38140	529 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	HXT6	P39003	570 aa	Known RBP	5.11	□□□□□ -1.59
SEC39	YLR440C	HXT7	P39004	570 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	REF2	P42073	533 aa	Predicted RBP	5.11	□□□□□ -1.59
SEC39	YLR440C	TMA22	P47089	198 aa	Predicted RBP	5.11	□□□□□ -1.59
SEC39	YLR440C	RAI1	P53063	387 aa	Known RBP	5.11	□□□□□ -1.59
SEC39	YLR440C	OKP1	P53298	406 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	CBK1	P53894	756 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	UGO1	Q03327	502 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	YLR345W	Q06137	509 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	BOP2	Q06150	570 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	OMS1	Q06668	471 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	RPN8	Q08723	338 aa	Known RBP	5.11	□□□□□ -1.59
SEC39	YLR440C	SET6	Q12529	373 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	YPR089W	O13585	888 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	PRP9	P19736	530 aa	Known RBP	5.11	□□□□□ -1.59
SEC39	YLR440C	PRP19	P32523	503 aa	Known RBP	5.11	□□□□□ -1.59
SEC39	YLR440C	YBL010C	P32788	280 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	SUR1	P33300	382 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	NIC96	P34077	839 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	MTH1	P35198	433 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	OCT1	P35999	772 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	TPO5	P36029	618 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	GPP2	P40106	250 aa	Known RBP	5.11	□□□□□ -1.59
SEC39	YLR440C	NOP9	P47077	666 aa	Known RBP	5.11	□□□□□ -1.59
SEC39	YLR440C	UPF3	P48412	387 aa	Known RBP	5.11	□□□□□ -1.59
SEC39	YLR440C	PSP2	P50109	593 aa	Known RBP	5.11	□□□□□ -1.59
SEC39	YLR440C	PCL10	P53124	433 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	YAP1802	P53309	568 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	TUB4	P53378	473 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	CWC24	P53769	259 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	KIN4	Q01919	800 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	YPL107W	Q02873	248 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	NHX1	Q04121	633 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	ECM18	Q04623	453 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	5.11	□□□□□ -1.59	not detected
SEC39	YLR440C	HMS1	Q12398	434 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	SKS1	Q12505	502 aa		5.11	□□□□□ -1.59
SEC39	YLR440C	RPS9A	O13516	197 aa	Known RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	RPS9B	P05755	195 aa	Known RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	ARG80	P07249	177 aa		5.1	□□□□□ -1.59
SEC39	YLR440C	TUP1	P16649	713 aa		5.1	□□□□□ -1.59
SEC39	YLR440C	URA4	P20051	364 aa		5.1	□□□□□ -1.59
SEC39	YLR440C	HSP30	P25619	332 aa		5.1	□□□□□ -1.59
SEC39	YLR440C	RAD5	P32849	1169 aa	Predicted RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	LRG1	P35688	1017 aa		5.1	□□□□□ -1.59
SEC39	YLR440C	NTC20	P38302	140 aa	Predicted RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	STT3	P39007	718 aa	Known RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	LSM5	P40089	93 aa	Known RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	CIR1	P42940	261 aa		5.1	□□□□□ -1.59
SEC39	YLR440C	ILM1	P47155	203 aa		5.1	□□□□□ -1.59
SEC39	YLR440C	RBL2	P48606	106 aa	Known RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	SLX9	P53251	210 aa	Predicted RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	UTP8	P53276	713 aa	Known RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	UFD2	P54860	961 aa		5.1	□□□□□ -1.59
SEC39	YLR440C	CIK1	Q01649	594 aa		5.1	□□□□□ -1.59
SEC39	YLR440C	TBF1	Q02457	562 aa		5.1	□□□□□ -1.59
SEC39	YLR440C	SRL4	Q03085	281 aa		5.1	□□□□□ -1.59
SEC39	YLR440C	VBA4	Q04602	768 aa	Known RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	VPS74	Q06385	345 aa		5.1	□□□□□ -1.59
SEC39	YLR440C	PUS7	Q08647	676 aa	Known RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	TUM1	Q08686	304 aa	Known RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	THP3	Q12049	470 aa	Known RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	MED2	Q12124	431 aa		5.1	□□□□□ -1.59
SEC39	YLR440C	MLP1	Q02455	1875 aa	Known RBP	5.1	□□□□□ -1.59
SEC39	YLR440C	SRS2	P12954	1174 aa		5.09	□□□□□ -1.59
SEC39	YLR440C	RVS161	P25343	265 aa	Known RBP	5.09	□□□□□ -1.59
SEC39	YLR440C	CWH43	P25618	953 aa		5.09	□□□□□ -1.59
SEC39	YLR440C	APL1	P27351	700 aa		5.09	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 41.5 ms