RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSL1	YLR005W	STE11	P23561	717 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	GPI10	P30777	616 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	RAD16	P31244	790 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	YKR051W	P36142	418 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	MED6	P38782	295 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	PLB1	P39105	664 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	MBP1	P39678	833 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	FTR1	P40088	404 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	SHQ1	P40486	507 aa	Predicted RBP	4.14	□□□□□ -1.75
SSL1	YLR005W	CHS6	P40955	746 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	YNR061C	P53747	219 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	GSF2	Q04697	403 aa	Known RBP	4.14	□□□□□ -1.75
SSL1	YLR005W	DON1	Q05610	365 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	YDL057W	Q07379	328 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	HRT3	Q12347	344 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	CPA2	P03965	1118 aa	Known RBP	4.14	□□□□□ -1.75
SSL1	YLR005W	GAC1	P28006	793 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	MUD1	P32605	298 aa	Known RBP	4.14	□□□□□ -1.75
SSL1	YLR005W	TKL2	P33315	681 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	PPS1	P38148	807 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	SAH1	P39954	449 aa	Known RBP	4.14	□□□□□ -1.75
SSL1	YLR005W	SMC3	P47037	1230 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	PEX14	P53112	341 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	HER2	Q03557	464 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	WAR1	Q03631	944 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	SNU56	Q03782	492 aa	Known RBP	4.14	□□□□□ -1.75
SSL1	YLR005W	UTP14	Q04500	899 aa	Known RBP	4.14	□□□□□ -1.75
SSL1	YLR005W	COG8	Q04632	607 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	EAF1	Q06337	982 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	MDM38	Q08179	573 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	GPM2	Q12008	311 aa		4.14	□□□□□ -1.75
SSL1	YLR005W	SIR1	P21691	654 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	MSH2	P25847	964 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	URA1	P28272	314 aa	Predicted RBP	4.13	□□□□□ -1.75
SSL1	YLR005W	BMH1	P29311	267 aa	Known RBP	4.13	□□□□□ -1.75
SSL1	YLR005W	NUP60	P39705	539 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	KAP123	P40069	1113 aa	Known RBP	4.13	□□□□□ -1.75
SSL1	YLR005W	MAD1	P40957	749 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	DAS1	P47005	663 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	YJR054W	P47114	497 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	HSH155	P49955	971 aa	Known RBP	4.13	□□□□□ -1.75
SSL1	YLR005W	TOF2	Q02208	771 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	GYL1	Q04322	720 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	PRM6	Q04705	352 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	BSP1	Q06604	576 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	YPQ1	Q12010	308 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	FAL1	Q12099	399 aa	Known RBP	4.13	□□□□□ -1.75
SSL1	YLR005W	MED1	Q12321	566 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	AIM44	Q99299	758 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	IRA1	P18963	3092 aa		4.13	□□□□□ -1.75
SSL1	YLR005W	RPL22A	P05749	121 aa	Known RBP	4.12	□□□□□ -1.75
SSL1	YLR005W	PRI2	P20457	528 aa		4.12	□□□□□ -1.75
SSL1	YLR005W	PPH22	P23595	377 aa		4.12	□□□□□ -1.75
SSL1	YLR005W	SRP101	P32916	621 aa		4.12	□□□□□ -1.75
SSL1	YLR005W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.12	□□□□□ -1.75	not detected
SSL1	YLR005W	TIF5	P38431	405 aa	Known RBP	4.12	□□□□□ -1.75
SSL1	YLR005W	GIC1	P38785	314 aa		4.12	□□□□□ -1.75
SSL1	YLR005W	DOT6	P40059	670 aa	Known RBP	4.12	□□□□□ -1.75
SSL1	YLR005W	MET12	P46151	657 aa		4.12	□□□□□ -1.75
SSL1	YLR005W	NPA3	P47122	385 aa		4.12	□□□□□ -1.75
SSL1	YLR005W	NBP1	P52919	319 aa	Predicted RBP	4.12	□□□□□ -1.75
SSL1	YLR005W	SUN4	P53616	420 aa		4.12	□□□□□ -1.75
SSL1	YLR005W	CEG1	Q01159	459 aa	Predicted RBP	4.12	□□□□□ -1.75
SSL1	YLR005W	CDD1	Q06549	142 aa		4.12	□□□□□ -1.75
SSL1	YLR005W	YCG1	Q06680	1035 aa		4.12	□□□□□ -1.75
SSL1	YLR005W	ADY3	Q07732	790 aa		4.12	□□□□□ -1.75
SSL1	YLR005W	RLP24	Q07915	199 aa	Known RBP	4.12	□□□□□ -1.75
SSL1	YLR005W	NOP12	Q08208	459 aa	Known RBP	4.12	□□□□□ -1.75
SSL1	YLR005W	TCO89	Q08921	799 aa		4.12	□□□□□ -1.75
SSL1	YLR005W	PNS1	Q12412	539 aa		4.12	□□□□□ -1.75
SSL1	YLR005W	GIS3	Q12418	502 aa		4.12	□□□□□ -1.75
SSL1	YLR005W	HIR1	P32479	840 aa		4.11	□□□□□ -1.75
SSL1	YLR005W	SWI3	P32591	825 aa		4.11	□□□□□ -1.75
SSL1	YLR005W	YEL1	P34225	687 aa		4.11	□□□□□ -1.75
SSL1	YLR005W	PRX1	P34227	261 aa	Known RBP	4.11	□□□□□ -1.75
SSL1	YLR005W	KTR4	P38131	464 aa		4.11	□□□□□ -1.75
SSL1	YLR005W	ATG12	P38316	186 aa		4.11	□□□□□ -1.75
SSL1	YLR005W	PCF11	P39081	626 aa	Predicted RBP	4.11	□□□□□ -1.75
SSL1	YLR005W	YIL161W	P40449	235 aa	Known RBP	4.11	□□□□□ -1.75
SSL1	YLR005W	NUP84	P52891	726 aa		4.11	□□□□□ -1.75
SSL1	YLR005W	YGR012W	P53206	393 aa		4.11	□□□□□ -1.75
SSL1	YLR005W	VPS16	Q03308	798 aa		4.11	□□□□□ -1.75
SSL1	YLR005W	APC5	Q08683	685 aa		4.11	□□□□□ -1.75
SSL1	YLR005W	PUS9	Q12069	462 aa		4.11	□□□□□ -1.75
SSL1	YLR005W	YPR027C	Q12079	277 aa		4.11	□□□□□ -1.75
SSL1	YLR005W	NTO1	Q12311	748 aa		4.11	□□□□□ -1.75
SSL1	YLR005W	NDJ1	Q12366	352 aa		4.11	□□□□□ -1.75
SSL1	YLR005W	CHS1	P08004	1131 aa		4.1	□□□□□ -1.75
SSL1	YLR005W	COX11	P19516	300 aa	Known RBP	4.1	□□□□□ -1.75
SSL1	YLR005W	CLN2	P20438	545 aa		4.1	□□□□□ -1.75
SSL1	YLR005W	DSS4	P32601	143 aa		4.1	□□□□□ -1.75
SSL1	YLR005W	MAL33	P38157	468 aa		4.1	□□□□□ -1.75
SSL1	YLR005W	LCB2	P40970	561 aa		4.1	□□□□□ -1.75
SSL1	YLR005W	GUF1	P46943	645 aa		4.1	□□□□□ -1.75
SSL1	YLR005W	COS5	P47187	383 aa		4.1	□□□□□ -1.75
SSL1	YLR005W	MSE1	P48525	536 aa		4.1	□□□□□ -1.75
SSL1	YLR005W	NMA2	P53204	395 aa		4.1	□□□□□ -1.75
SSL1	YLR005W	TIM8	P57744	87 aa		4.1	□□□□□ -1.75
SSL1	YLR005W	RPA49	Q01080	415 aa	Predicted RBP	4.1	□□□□□ -1.75
SSL1	YLR005W	SEG1	Q04279	960 aa		4.1	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 11.8 ms