RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeast

Gene PRE1, Length 597 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE1	YER012W	VPS33	P20795	691 aa		4.09	□□□□□ -1.75
PRE1	YER012W	DID4	P36108	232 aa		4.09	□□□□□ -1.75
PRE1	YER012W	SAE2	P46946	345 aa		4.09	□□□□□ -1.75
PRE1	YER012W	PMT3	P47190	753 aa		4.09	□□□□□ -1.75
PRE1	YER012W	FAP7	Q12055	197 aa	Predicted RBP	4.09	□□□□□ -1.75
PRE1	YER012W	RDL1	Q12305	139 aa	Known RBP	4.09	□□□□□ -1.75
PRE1	YER012W	AHA1	Q12449	350 aa	Known RBP	4.09	□□□□□ -1.75
PRE1	YER012W	GSY2	P27472	705 aa		4.08	□□□□□ -1.76
PRE1	YER012W	APD1	P38281	316 aa		4.08	□□□□□ -1.76
PRE1	YER012W	TDA10	P42938	290 aa		4.08	□□□□□ -1.76
PRE1	YER012W	SCW4	P53334	386 aa	Known RBP	4.08	□□□□□ -1.76
PRE1	YER012W	CRC1	Q12289	327 aa		4.08	□□□□□ -1.76
PRE1	YER012W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
PRE1	YER012W	YUR1	P26725	428 aa		4.07	□□□□□ -1.76
PRE1	YER012W	DSS4	P32601	143 aa		4.07	□□□□□ -1.76
PRE1	YER012W	MEP2	P41948	499 aa		4.07	□□□□□ -1.76
PRE1	YER012W	YGR237C	P50089	785 aa		4.07	□□□□□ -1.76
PRE1	YER012W	YPL071C	Q02864	156 aa		4.07	□□□□□ -1.76
PRE1	YER012W	UTP14	Q04500	899 aa	Known RBP	4.07	□□□□□ -1.76
PRE1	YER012W	PDR5	P33302	1511 aa	Known RBP	4.06	□□□□□ -1.76
PRE1	YER012W	PDR11	P40550	1411 aa		4.06	□□□□□ -1.76
PRE1	YER012W	YJU2	P28320	278 aa	Predicted RBP	4.06	□□□□□ -1.76
PRE1	YER012W	IRC8	P47046	822 aa		4.06	□□□□□ -1.76
PRE1	YER012W	RNR4	P49723	345 aa	Known RBP	4.06	□□□□□ -1.76
PRE1	YER012W	IDP3	P53982	420 aa	Known RBP	4.06	□□□□□ -1.76
PRE1	YER012W	TPO3	Q06451	622 aa		4.06	□□□□□ -1.76
PRE1	YER012W	HER1	Q12276	1246 aa		4.06	□□□□□ -1.76
PRE1	YER012W	YEL076C-A	P0CX16	216 aa		4.05	□□□□□ -1.76
PRE1	YER012W	YLR464W	P0CX17	216 aa		4.05	□□□□□ -1.76
PRE1	YER012W	BET2	P20133	325 aa		4.05	□□□□□ -1.76
PRE1	YER012W	GDA1	P32621	518 aa		4.05	□□□□□ -1.76
PRE1	YER012W	YEL076C	P39971	216 aa		4.05	□□□□□ -1.76
PRE1	YER012W	JHD1	P40034	492 aa		4.05	□□□□□ -1.76
PRE1	YER012W	MNT3	P40549	630 aa		4.05	□□□□□ -1.76
PRE1	YER012W	ENP2	P48234	707 aa	Known RBP	4.05	□□□□□ -1.76
PRE1	YER012W	HRD3	Q05787	833 aa		4.05	□□□□□ -1.76
PRE1	YER012W	CYK3	Q07533	885 aa		4.05	□□□□□ -1.76
PRE1	YER012W	YPR027C	Q12079	277 aa		4.05	□□□□□ -1.76
PRE1	YER012W	SRB8	P25648	1427 aa		4.04	□□□□□ -1.76
PRE1	YER012W	AAC1	P04710	309 aa		4.04	□□□□□ -1.76
PRE1	YER012W	TSR4	P25040	408 aa		4.04	□□□□□ -1.76
PRE1	YER012W	EUG1	P32474	517 aa		4.04	□□□□□ -1.76
PRE1	YER012W	STB5	P38699	743 aa		4.04	□□□□□ -1.76
PRE1	YER012W	NMD2	P38798	1089 aa	Known RBP	4.04	□□□□□ -1.76
PRE1	YER012W	FLO5	P38894	1075 aa		4.04	□□□□□ -1.76
PRE1	YER012W	YIL024C	P40543	189 aa		4.04	□□□□□ -1.76
PRE1	YER012W	STB2	P46679	850 aa		4.04	□□□□□ -1.76
PRE1	YER012W	PEF1	P53238	335 aa		4.04	□□□□□ -1.76
PRE1	YER012W	MDR1	P53258	950 aa		4.04	□□□□□ -1.76
PRE1	YER012W	YNL092W	P53934	400 aa		4.04	□□□□□ -1.76
PRE1	YER012W	YGR161W-C	Q3E744	92 aa		4.04	□□□□□ -1.76
PRE1	YER012W	EAF5	P39995	279 aa		4.03	□□□□□ -1.76
PRE1	YER012W	YML119W	Q03208	357 aa		4.03	□□□□□ -1.76
PRE1	YER012W	RAD33	Q04231	177 aa		4.03	□□□□□ -1.76
PRE1	YER012W	CDC5	P32562	705 aa		4.02	□□□□□ -1.77
PRE1	YER012W	PEA2	P40091	420 aa		4.02	□□□□□ -1.77
PRE1	YER012W	PCI8	P40512	444 aa		4.02	□□□□□ -1.77
PRE1	YER012W	SPN1	Q06505	410 aa	Predicted RBP	4.02	□□□□□ -1.77
PRE1	YER012W	YOR378W	Q08902	515 aa		4.02	□□□□□ -1.77
PRE1	YER012W	BI2	P03873	423 aa		4.01	□□□□□ -1.77
PRE1	YER012W	SEC12	P11655	471 aa		4.01	□□□□□ -1.77
PRE1	YER012W	ASK1	P35734	292 aa		4.01	□□□□□ -1.77
PRE1	YER012W	IMD2	P38697	523 aa	Known RBP	4.01	□□□□□ -1.77
PRE1	YER012W	YIL092W	P40497	633 aa		4.01	□□□□□ -1.77
PRE1	YER012W	IRC5	P43610	853 aa		4.01	□□□□□ -1.77
PRE1	YER012W	IMD3	P50095	523 aa	Known RBP	4.01	□□□□□ -1.77
PRE1	YER012W	CWC2	Q12046	339 aa	Predicted RBP	4.01	□□□□□ -1.77
PRE1	YER012W	PNO1	Q99216	274 aa	Known RBP	4.01	□□□□□ -1.77
PRE1	YER012W	TY1B-NL2	Q99337	1749 aa	Known RBP	4.01	□□□□□ -1.77
PRE1	YER012W	TUF1	P02992	437 aa	Known RBP	4	□□□□□ -1.77
PRE1	YER012W	AEP2	P22136	580 aa		4	□□□□□ -1.77
PRE1	YER012W	ARG1	P22768	420 aa		4	□□□□□ -1.77
PRE1	YER012W	MTG2	P38860	518 aa		4	□□□□□ -1.77
PRE1	YER012W	GPP2	P40106	250 aa	Known RBP	4	□□□□□ -1.77
PRE1	YER012W	SSM4	P40318	1319 aa		3.99	□□□□□ -1.77
PRE1	YER012W	YPR089W	O13585	888 aa		3.99	□□□□□ -1.77
PRE1	YER012W	PXL1	P36166	706 aa		3.99	□□□□□ -1.77
PRE1	YER012W	MNT2	P53059	558 aa		3.99	□□□□□ -1.77
PRE1	YER012W	SKY1	Q03656	742 aa		3.99	□□□□□ -1.77
PRE1	YER012W	RMP1	Q12530	201 aa		3.99	□□□□□ -1.77
PRE1	YER012W	RTC1	Q08281	1341 aa		3.98	□□□□□ -1.77
PRE1	YER012W	NUP192	P47054	1683 aa		3.98	□□□□□ -1.77
PRE1	YER012W	URA3	P03962	267 aa		3.98	□□□□□ -1.77
PRE1	YER012W	YER190C-B	P0CX94	160 aa		3.98	□□□□□ -1.77
PRE1	YER012W	YEL077W-A	P0CX95	160 aa		3.98	□□□□□ -1.77
PRE1	YER012W	YGR296C-B	P0CX96	160 aa		3.98	□□□□□ -1.77
PRE1	YER012W	YPL283W-B	P0CX97	160 aa		3.98	□□□□□ -1.77
PRE1	YER012W	YPR204C-A	P0CX98	160 aa		3.98	□□□□□ -1.77
PRE1	YER012W	RRP43	P25359	394 aa	Predicted RBP	3.98	□□□□□ -1.77
PRE1	YER012W	SRP68	P38687	599 aa	Known RBP	3.98	□□□□□ -1.77
PRE1	YER012W	YMR124W	P39523	943 aa	Known RBP	3.98	□□□□□ -1.77
PRE1	YER012W	IRC7	P43623	340 aa		3.98	□□□□□ -1.77
PRE1	YER012W	COP1	P53622	1201 aa	Known RBP	3.98	□□□□□ -1.77
PRE1	YER012W	UBP16	Q02863	499 aa		3.98	□□□□□ -1.77
PRE1	YER012W	SNU56	Q03782	492 aa	Known RBP	3.98	□□□□□ -1.77
PRE1	YER012W	ECM38	Q05902	660 aa	Predicted RBP	3.98	□□□□□ -1.77
PRE1	YER012W	RTK1	Q12100	620 aa	Predicted RBP	3.98	□□□□□ -1.77
PRE1	YER012W	Q0010	Q9ZZX9	128 aa		3.98	□□□□□ -1.77
PRE1	YER012W	HAP1	P0CE41	1502 aa		3.98	□□□□□ -1.77
PRE1	YER012W	AMD2	P22580	549 aa		3.97	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 21.9 ms