RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 SPTSSBQ8NFR3 76 aa5.14□□□□□ -1.59
VPS53-218ENST00000575207 TRAV7A0A075B6U4 112 aa5.12□□□□□ -1.59
VPS53-218ENST00000575207 ACYP2P14621 99 aa5.11□□□□□ -1.59
VPS53-218ENST00000575207 CHKB-CPT1BH3BT56 60 aa5.1□□□□□ -1.59
VPS53-218ENST00000575207 SMIM20Q8N5G0 67 aa5.08□□□□□ -1.6
VPS53-218ENST00000575207 C10orf95Q9H7T3 257 aa5.04□□□□□ -1.6
VPS53-218ENST00000575207 KRTAP5-1Q6L8H4 278 aa5□□□□□ -1.61
VPS53-218ENST00000575207 K7ERU9 68 aa4.99□□□□□ -1.61
VPS53-218ENST00000575207 KRTAP23-1A1A580 65 aa4.95□□□□□ -1.62
VPS53-218ENST00000575207 SNURFQ9Y675 71 aa4.94□□□□□ -1.62
VPS53-218ENST00000575207 LCE3AQ5TA76 89 aa4.91□□□□□ -1.62
VPS53-218ENST00000575207 SVIPQ8NHG7 77 aa4.9□□□□□ -1.63
VPS53-218ENST00000575207 SPANXA2-OT1Q8N9U9 137 aa4.87□□□□□ -1.63
VPS53-218ENST00000575207 KRTAP13-4Q3LI77 160 aa4.85□□□□□ -1.63
VPS53-218ENST00000575207 SEC61GP60059 68 aa4.84□□□□□ -1.63
VPS53-218ENST00000575207 SERP2Q8N6R1 65 aa4.83□□□□□ -1.64
VPS53-218ENST00000575207 SERP1Q9Y6X1 66 aa4.8□□□□□ -1.64
VPS53-218ENST00000575207 KRTAP6-2Q3LI66 62 aa4.78□□□□□ -1.64
VPS53-218ENST00000575207 KRTAP6-1Q3LI64 71 aa4.77□□□□□ -1.65
VPS53-218ENST00000575207 KRTAP15-1Q3LI76 137 aa4.77□□□□□ -1.65
VPS53-218ENST00000575207 COA5Q86WW8 74 aa4.76□□□□□ -1.65
VPS53-218ENST00000575207 MT1AP04731 61 aa4.72□□□□□ -1.65
VPS53-218ENST00000575207 KRTAP12-3P60328 96 aa4.7□□□□□ -1.66
VPS53-218ENST00000575207 SPINT4Q6UDR6 99 aa4.7□□□□□ -1.66
VPS53-218ENST00000575207 A0A1B0GU33 70 aa4.66□□□□□ -1.66
VPS53-218ENST00000575207 SPATA8Q6RVD6 105 aa4.66□□□□□ -1.66
VPS53-218ENST00000575207 COX7CP15954 63 aa4.65□□□□□ -1.67
VPS53-218ENST00000575207 A0A1B0GU69 56 aa4.6□□□□□ -1.67
VPS53-218ENST00000575207 SMIM26A0A096LP01 95 aa4.57□□□□□ -1.68
VPS53-218ENST00000575207 H7BZZ5 65 aa4.55□□□□□ -1.68
VPS53-218ENST00000575207 TNP1P09430 55 aa4.55□□□□□ -1.68
VPS53-218ENST00000575207 KRTAP12-1P59990 96 aa4.54□□□□□ -1.68
VPS53-218ENST00000575207 ANAPC13Q9BS18 74 aa4.49□□□□□ -1.69
VPS53-218ENST00000575207 PRR15LQ9BU68 103 aa4.47□□□□□ -1.69
VPS53-218ENST00000575207 A8MU10 97 aa4.46□□□□□ -1.7
VPS53-218ENST00000575207 ATP5EP56381 51 aaPredicted RBP4.38□□□□□ -1.71
VPS53-218ENST00000575207 MT3P25713 68 aa4.37□□□□□ -1.71
VPS53-218ENST00000575207 LCE1EQ5T753 118 aa4.34□□□□□ -1.71
VPS53-218ENST00000575207 CCDC179H3BU77 68 aa4.33□□□□□ -1.72
VPS53-218ENST00000575207 LINC01558Q9Y6Z2 57 aa4.28□□□□□ -1.72
VPS53-218ENST00000575207 UQCR11O14957 56 aa4.26□□□□□ -1.73
VPS53-218ENST00000575207 KRTAP25-1Q3LHN0 102 aa4.24□□□□□ -1.73
VPS53-218ENST00000575207 TMEM258P61165 79 aa4.21□□□□□ -1.74
VPS53-218ENST00000575207 LCE3CQ5T5A8 94 aa4.21□□□□□ -1.74
VPS53-218ENST00000575207 K7ERS5 55 aa4.2□□□□□ -1.74
VPS53-218ENST00000575207 PHGR1C9JFL3 82 aa4.16□□□□□ -1.74
VPS53-218ENST00000575207 MIR22HGQ0VDD5 57 aa4.16□□□□□ -1.74
VPS53-218ENST00000575207 LCE1BQ5T7P3 118 aa4.12□□□□□ -1.75
VPS53-218ENST00000575207 KRTAP5-11Q6L8G4 156 aa4.1□□□□□ -1.75
VPS53-218ENST00000575207 V9GYY9 64 aa4.06□□□□□ -1.76
VPS53-218ENST00000575207 PSPHP1O15172 72 aa4.03□□□□□ -1.76
VPS53-218ENST00000575207 LCE1CQ5T751 118 aa4.03□□□□□ -1.76
VPS53-218ENST00000575207 KRTAP9-6A8MVA2 160 aa4□□□□□ -1.77
VPS53-218ENST00000575207 PCP4P48539 62 aa3.98□□□□□ -1.77
VPS53-218ENST00000575207 LCE1FQ5T754 118 aa3.95□□□□□ -1.78
VPS53-218ENST00000575207 Q1T7F1 81 aa3.94□□□□□ -1.78
VPS53-218ENST00000575207 A6NED7 52 aa3.93□□□□□ -1.78
VPS53-218ENST00000575207 CDC42SE1Q9NRR8 79 aa3.91□□□□□ -1.78
VPS53-218ENST00000575207 A0A0A0MQY5 61 aa3.88□□□□□ -1.79
VPS53-218ENST00000575207 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.85□□□□□ -1.79
VPS53-218ENST00000575207 RPS28P62857 69 aaKnown RBP3.84□□□□□ -1.79
VPS53-218ENST00000575207 ROMO1P60602 79 aa3.79□□□□□ -1.8
VPS53-218ENST00000575207 MUC19Q7Z5P9 8384 aa3.41□□□□□ -1.86
VPS53-218ENST00000575207 BRK1Q8WUW1 75 aa3.28□□□□□ -1.88
VPS53-218ENST00000575207 KRTAP21-1Q3LI58 79 aa3.2□□□□□ -1.9
VPS53-218ENST00000575207 PRAC1Q96KF2 57 aa3.19□□□□□ -1.9
VPS53-218ENST00000575207 KRTAP21-2Q3LI59 83 aa3.18□□□□□ -1.9
VPS53-218ENST00000575207 KRTAP4-4Q9BYR3 166 aa3.17□□□□□ -1.9
VPS53-218ENST00000575207 PMAIP1Q13794 54 aa3.07□□□□□ -1.92
VPS53-218ENST00000575207 NDUFAF8A1L188 74 aa3.04□□□□□ -1.92
VPS53-218ENST00000575207 PRO0628Q9UI54 55 aa2.95□□□□□ -1.94
VPS53-218ENST00000575207 LCE3DQ9BYE3 92 aa2.82□□□□□ -1.96
VPS53-218ENST00000575207 LCE3EQ5T5B0 92 aa2.8□□□□□ -1.96
VPS53-218ENST00000575207 KTN1-AS1Q86SY8 53 aa2.77□□□□□ -1.97
VPS53-218ENST00000575207 LUZP6Q538Z0 58 aa2.62□□□□□ -1.99
VPS53-218ENST00000575207 MUC16Q8WXI7 14507 aa2.31□□□□□ -2.04
VPS53-218ENST00000575207 PRM1P04553 51 aa1.93□□□□□ -2.1
VPS53-218ENST00000575207 INE1O15225 51 aa1.7□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 7.8 ms