RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 HYDINQ4G0P3 5121 aa0.57□□□□□ -2.32
SF3B1-210ENST00000482158 KIAA1109Q2LD37 5005 aa0.56□□□□□ -2.32
SF3B1-210ENST00000482158 A0A096LNI7 61 aa0.56□□□□□ -2.32
SF3B1-210ENST00000482158 HERC2O95714 4834 aa0.56□□□□□ -2.32
SF3B1-210ENST00000482158 DNAH7Q8WXX0 4024 aa0.55□□□□□ -2.32
SF3B1-210ENST00000482158 DYNC2H1Q8NCM8 4307 aaKnown RBP0.55□□□□□ -2.32
SF3B1-210ENST00000482158 EPPK1P58107 5090 aaKnown RBP0.55□□□□□ -2.32
SF3B1-210ENST00000482158 PLECQ15149 4684 aaKnown RBP0.55□□□□□ -2.32
SF3B1-210ENST00000482158 RYR1P21817 5038 aa0.55□□□□□ -2.32
SF3B1-210ENST00000482158 PKHD1P08F94 4074 aa0.55□□□□□ -2.32
SF3B1-210ENST00000482158 DNAH2Q9P225 4427 aa0.55□□□□□ -2.32
SF3B1-210ENST00000482158 DNAH6Q9C0G6 4158 aa0.55□□□□□ -2.32
SF3B1-210ENST00000482158 PKHD1L1Q86WI1 4243 aa0.54□□□□□ -2.32
SF3B1-210ENST00000482158 HSPG2P98160 4391 aa0.54□□□□□ -2.32
SF3B1-210ENST00000482158 DNAH8Q96JB1 4490 aa0.54□□□□□ -2.32
SF3B1-210ENST00000482158 RPS29P62273 56 aaKnown RBP0.54□□□□□ -2.32
SF3B1-210ENST00000482158 PCLOQ9Y6V0 5065 aa0.54□□□□□ -2.32
SF3B1-210ENST00000482158 LRP1Q07954 4544 aaKnown RBP0.54□□□□□ -2.32
SF3B1-210ENST00000482158 PKD1P98161 4303 aa0.53□□□□□ -2.32
SF3B1-210ENST00000482158 SYNE1Q8NF91 8797 aaKnown RBP0.53□□□□□ -2.32
SF3B1-210ENST00000482158 SPRR2DP22532 72 aa0.53□□□□□ -2.32
SF3B1-210ENST00000482158 DNAH17Q9UFH2 4485 aa0.53□□□□□ -2.32
SF3B1-210ENST00000482158 HECTD4Q9Y4D8 3996 aa0.53□□□□□ -2.32
SF3B1-210ENST00000482158 DNAH10Q8IVF4 4471 aa0.52□□□□□ -2.33
SF3B1-210ENST00000482158 LRP1BQ9NZR2 4599 aa0.52□□□□□ -2.33
SF3B1-210ENST00000482158 DYNC1H1Q14204 4646 aaKnown RBP0.52□□□□□ -2.33
SF3B1-210ENST00000482158 LRP2P98164 4655 aa0.51□□□□□ -2.33
SF3B1-210ENST00000482158 FAT3Q8TDW7 4589 aa0.51□□□□□ -2.33
SF3B1-210ENST00000482158 MUC5ACP98088 5654 aa0.51□□□□□ -2.33
SF3B1-210ENST00000482158 HERC1Q15751 4861 aa0.5□□□□□ -2.33
SF3B1-210ENST00000482158 FAT1Q14517 4588 aa0.5□□□□□ -2.33
SF3B1-210ENST00000482158 SPRR2BP35325 72 aa0.5□□□□□ -2.33
SF3B1-210ENST00000482158 KRTAP8-1Q8IUC2 63 aa0.5□□□□□ -2.33
SF3B1-210ENST00000482158 DNAH5Q8TE73 4624 aa0.5□□□□□ -2.33
SF3B1-210ENST00000482158 APOBP04114 4563 aaKnown RBP0.5□□□□□ -2.33
SF3B1-210ENST00000482158 ABCA13Q86UQ4 5058 aa0.49□□□□□ -2.33
SF3B1-210ENST00000482158 LPAP08519 4548 aa0.49□□□□□ -2.33
SF3B1-210ENST00000482158 MT1HP80294 61 aa0.49□□□□□ -2.33
SF3B1-210ENST00000482158 FLGP20930 4061 aaPredicted RBP0.48□□□□□ -2.33
SF3B1-210ENST00000482158 KRTAP19-2Q3LHN2 52 aa0.46□□□□□ -2.34
SF3B1-210ENST00000482158 KRTAP6-2Q3LI66 62 aa0.46□□□□□ -2.34
SF3B1-210ENST00000482158 KRTAP19-6Q3LI70 58 aa0.46□□□□□ -2.34
SF3B1-210ENST00000482158 UBR4Q5T4S7 5183 aa0.46□□□□□ -2.34
SF3B1-210ENST00000482158 FAT4Q6V0I7 4981 aa0.45□□□□□ -2.34
SF3B1-210ENST00000482158 KRTAP20-1Q3LI63 56 aa0.45□□□□□ -2.34
SF3B1-210ENST00000482158 MDN1Q9NU22 5596 aa0.44□□□□□ -2.34
SF3B1-210ENST00000482158 MT2AP02795 61 aa0.44□□□□□ -2.34
SF3B1-210ENST00000482158 MT1AP04731 61 aa0.44□□□□□ -2.34
SF3B1-210ENST00000482158 HMCN2Q8NDA2 5059 aa0.44□□□□□ -2.34
SF3B1-210ENST00000482158 MT1FP04733 61 aa0.43□□□□□ -2.34
SF3B1-210ENST00000482158 SPRR2AP35326 72 aa0.43□□□□□ -2.34
SF3B1-210ENST00000482158 RNF213Q63HN8 5207 aa0.43□□□□□ -2.34
SF3B1-210ENST00000482158 SYNE2Q8WXH0 6885 aaKnown RBP0.42□□□□□ -2.34
SF3B1-210ENST00000482158 KRTAP19-5Q3LI72 72 aa0.42□□□□□ -2.34
SF3B1-210ENST00000482158 FSIP2Q5CZC0 6907 aa0.41□□□□□ -2.34
SF3B1-210ENST00000482158 SPRR2EP22531 72 aa0.41□□□□□ -2.34
SF3B1-210ENST00000482158 KRTAP19-8Q3LI54 63 aa0.41□□□□□ -2.34
SF3B1-210ENST00000482158 SPRR2FQ96RM1 72 aa0.41□□□□□ -2.34
SF3B1-210ENST00000482158 SPRR2GQ9BYE4 73 aa0.41□□□□□ -2.34
SF3B1-210ENST00000482158 MUC2Q02817 5179 aa0.4□□□□□ -2.35
SF3B1-210ENST00000482158 MUC17Q685J3 4493 aa0.4□□□□□ -2.35
SF3B1-210ENST00000482158 MT1BP07438 61 aa0.39□□□□□ -2.35
SF3B1-210ENST00000482158 SSPOA2VEC9 5147 aa0.38□□□□□ -2.35
SF3B1-210ENST00000482158 KMT2DO14686 5537 aa0.38□□□□□ -2.35
SF3B1-210ENST00000482158 USH2AO75445 5202 aa0.37□□□□□ -2.35
SF3B1-210ENST00000482158 MT1GP13640 62 aa0.36□□□□□ -2.35
SF3B1-210ENST00000482158 MT1XP80297 61 aa0.36□□□□□ -2.35
SF3B1-210ENST00000482158 MACF1Q9UPN3 7388 aaKnown RBP0.35□□□□□ -2.35
SF3B1-210ENST00000482158 MT4P47944 62 aa0.34□□□□□ -2.36
SF3B1-210ENST00000482158 NEBP20929 6669 aa0.32□□□□□ -2.36
SF3B1-210ENST00000482158 MT1EP04732 61 aa0.32□□□□□ -2.36
SF3B1-210ENST00000482158 MT1MQ8N339 61 aa0.32□□□□□ -2.36
SF3B1-210ENST00000482158 DSTQ03001 7570 aaKnown RBP0.31□□□□□ -2.36
SF3B1-210ENST00000482158 KRTAP19-7Q3SYF9 63 aa0.31□□□□□ -2.36
SF3B1-210ENST00000482158 MT1LQ93083 61 aa0.31□□□□□ -2.36
SF3B1-210ENST00000482158 MUC12Q9UKN1 5478 aa0.3□□□□□ -2.36
SF3B1-210ENST00000482158 KRTAP20-2Q3LI61 65 aa0.3□□□□□ -2.36
SF3B1-210ENST00000482158 KRTAP6-1Q3LI64 71 aa0.26□□□□□ -2.37
Retrieved 78 of 20,778 RNA–protein pairs in 11.9 ms