RNA–Protein interactions for RNA: ENSMUST00000035283.10

Nup88-201, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,450 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-201ENSMUST00000035283 Psmg4P0C7N9 123 aa10.35□□□□□ -0.75
Nup88-201ENSMUST00000035283 Ubald2Q8BQH4 164 aa10.35□□□□□ -0.75
Nup88-201ENSMUST00000035283 Spink6Q8BT20 105 aa10.35□□□□□ -0.75
Nup88-201ENSMUST00000035283 Prrc2aQ7TSC1 2158 aaKnown RBP10.35□□□□□ -0.75
Nup88-201ENSMUST00000035283 Cep250Q60952 2414 aa10.35□□□□□ -0.75
Nup88-201ENSMUST00000035283 TcraP01849 138 aa10.35□□□□□ -0.75
Nup88-201ENSMUST00000035283 Gm5941Q497P9 117 aa10.35□□□□□ -0.75
Nup88-201ENSMUST00000035283 Sptbn1Q62261 2363 aaKnown RBP10.35□□□□□ -0.75
Nup88-201ENSMUST00000035283 Trav21-dv12A0A075B6C4 109 aa10.34□□□□□ -0.75
Nup88-201ENSMUST00000035283 CrygbP04344 175 aa10.34□□□□□ -0.75
Nup88-201ENSMUST00000035283 Spata46Q4FZF2 204 aa10.34□□□□□ -0.75
Nup88-201ENSMUST00000035283 Ttc32Q9DAC7 148 aa10.34□□□□□ -0.75
Nup88-201ENSMUST00000035283 Ighv1-77A0A0G2JGS9 117 aa10.34□□□□□ -0.75
Nup88-201ENSMUST00000035283 Spock3Q8BKV0 436 aa10.34□□□□□ -0.75
Nup88-201ENSMUST00000035283 Tmem238lA0A1B0GS74 79 aa10.33□□□□□ -0.76
Nup88-201ENSMUST00000035283 Obp2bA2BHR0 176 aa10.33□□□□□ -0.76
Nup88-201ENSMUST00000035283 Foxc2Q61850 494 aa10.33□□□□□ -0.76
Nup88-201ENSMUST00000035283 Gm17430F6RSK3 157 aa10.33□□□□□ -0.76
Nup88-201ENSMUST00000035283 Mrps21P58059 87 aa10.33□□□□□ -0.76
Nup88-201ENSMUST00000035283 Olfr1209Q3SXJ3 310 aa10.33□□□□□ -0.76
Nup88-201ENSMUST00000035283 Bub3Q9WVA3 326 aa10.33□□□□□ -0.76
Nup88-201ENSMUST00000035283 Trav19A0A0B4J1K4 119 aa10.32□□□□□ -0.76
Nup88-201ENSMUST00000035283 Gpx7Q99LJ6 186 aa10.32□□□□□ -0.76
Nup88-201ENSMUST00000035283 Shisa9Q9CZN4 424 aa10.32□□□□□ -0.76
Nup88-201ENSMUST00000035283 Obox8V9GWY9 217 aa10.32□□□□□ -0.76
Nup88-201ENSMUST00000035283 Tcrg-V6A0A075B5Y8 134 aa10.32□□□□□ -0.76
Nup88-201ENSMUST00000035283 Gm10036E9PYL9 178 aaKnown RBP10.32□□□□□ -0.76
Nup88-201ENSMUST00000035283 Ndufa1O35683 70 aa10.32□□□□□ -0.76
Nup88-201ENSMUST00000035283 Atxn7l1Q9CZ05 146 aa10.32□□□□□ -0.76
Nup88-201ENSMUST00000035283 Ighv1-23A0A0A6YVW3 117 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 Igkv4-57A0A0A6YYE7 117 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 Olfr311Q5NC59 308 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 Srsf2Q62093 221 aaKnown RBP10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 Gm16223Q8CBM3 117 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 Snai3Q9QY31 287 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 Ptprz1B9EKR1 2312 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 Muc4Q8JZM8 3443 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 Igkv4-90A0A075B5L3 117 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 P01741 114 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 Cox7cP17665 63 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 RbpjP31266 526 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 Khdc1cQ4KL78 166 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 Stpg1Q9D2F5 341 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 Slamf6Q9ET39 351 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 Tcf24V9GWT9 166 aa10.31□□□□□ -0.76
Nup88-201ENSMUST00000035283 A730046J19RikA0A1B0GSN8 89 aa10.3□□□□□ -0.76
Nup88-201ENSMUST00000035283 AW146154Q3TPQ7 468 aa10.3□□□□□ -0.76
Nup88-201ENSMUST00000035283 Spink13Q3UTS8 97 aa10.3□□□□□ -0.76
Nup88-201ENSMUST00000035283 Gm14137Q8CE97 175 aa10.3□□□□□ -0.76
Nup88-201ENSMUST00000035283 Hoxc12Q8K5B8 280 aa10.3□□□□□ -0.76
Nup88-201ENSMUST00000035283 Wfdc15bQ9JHY4 80 aa10.3□□□□□ -0.76
Nup88-201ENSMUST00000035283 Abca4O35600 2310 aa10.3□□□□□ -0.76
Nup88-201ENSMUST00000035283 Igkv4-59A0A0B4J1I8 117 aa10.3□□□□□ -0.76
Nup88-201ENSMUST00000035283 1700056E22RikF7CNM6 234 aa10.3□□□□□ -0.76
Nup88-201ENSMUST00000035283 P18527 97 aa10.3□□□□□ -0.76
Nup88-201ENSMUST00000035283 Hint1P70349 126 aaKnown RBP10.3□□□□□ -0.76
Nup88-201ENSMUST00000035283 Trav8-1A0A075B641 109 aa10.29□□□□□ -0.76
Nup88-201ENSMUST00000035283 Minos1Q7TNS2 76 aa10.29□□□□□ -0.76
Nup88-201ENSMUST00000035283 Gm26938S4R185 226 aa10.29□□□□□ -0.76
Nup88-201ENSMUST00000035283 Sdk1Q3UH53 2193 aa10.29□□□□□ -0.76
Nup88-201ENSMUST00000035283 Iglc1A0A0G2JE99 106 aa10.29□□□□□ -0.76
Nup88-201ENSMUST00000035283 Gosr1O88630 250 aa10.29□□□□□ -0.76
Nup88-201ENSMUST00000035283 P01843 105 aa10.29□□□□□ -0.76
Nup88-201ENSMUST00000035283 Hspe1Q64433 102 aaKnown RBP10.29□□□□□ -0.76
Nup88-201ENSMUST00000035283 Atp6v0e1Q9CQD8 81 aa10.29□□□□□ -0.76
Nup88-201ENSMUST00000035283 Obox1Q9D350 204 aa10.29□□□□□ -0.76
Nup88-201ENSMUST00000035283 Hbb-bsA8DUK4 147 aa10.28□□□□□ -0.76
Nup88-201ENSMUST00000035283 Gm17727E9Q4V7 109 aa10.28□□□□□ -0.76
Nup88-201ENSMUST00000035283 Gm5294J3QP53 216 aa10.28□□□□□ -0.76
Nup88-201ENSMUST00000035283 Defa37K9J724 93 aa10.28□□□□□ -0.76
Nup88-201ENSMUST00000035283 Sigmar1O55242 223 aa10.28□□□□□ -0.76
Nup88-201ENSMUST00000035283 Hbb-b1P02088 147 aa10.28□□□□□ -0.76
Nup88-201ENSMUST00000035283 Defa5P28312 93 aa10.28□□□□□ -0.76
Nup88-201ENSMUST00000035283 Tal2Q62282 108 aa10.28□□□□□ -0.76
Nup88-201ENSMUST00000035283 Tnfrsf23Q9ER63 176 aa10.28□□□□□ -0.76
Nup88-201ENSMUST00000035283 Ighv1-22A0A075B5U7 117 aa10.28□□□□□ -0.76
Nup88-201ENSMUST00000035283 Spint3Q3UW09 88 aa10.28□□□□□ -0.76
Nup88-201ENSMUST00000035283 Nsun4C4P6S0 806 aaKnown RBP10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 Esp3J3QN49 87 aa10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 Defa24Q5G865 93 aa10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 Trav7-2Q5R1I3 112 aa10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 Ang2Q64438 145 aa10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 Q9CX25 107 aa10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 ManfQ9CXI5 179 aaKnown RBP10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 Rs1Q9Z1L4 224 aa10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 Brd3osA0A1B0GRB6 84 aa10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 Ly6lH3BJG9 140 aa10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 Smim1P0C8K7 78 aa10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 Fhl1P97447 280 aaKnown RBP10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 Zfand3Q497H0 227 aa10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 A130051J06RikQ8CAU1 227 aa10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 Dopey2Q3UHQ6 2295 aa10.27□□□□□ -0.77
Nup88-201ENSMUST00000035283 Ighv1-4A0A075B5T4 117 aa10.26□□□□□ -0.77
Nup88-201ENSMUST00000035283 Igkv4-71A0A0G2JEH0 117 aa10.26□□□□□ -0.77
Nup88-201ENSMUST00000035283 Insl3O09107 122 aa10.26□□□□□ -0.77
Nup88-201ENSMUST00000035283 P06334 169 aa10.26□□□□□ -0.77
Nup88-201ENSMUST00000035283 Nbl1Q61477 178 aa10.26□□□□□ -0.77
Nup88-201ENSMUST00000035283 Srsf1Q6PDM2 248 aaKnown RBP10.26□□□□□ -0.77
Nup88-201ENSMUST00000035283 E130116L18RikQ8BMV6 101 aa10.26□□□□□ -0.77
Nup88-201ENSMUST00000035283 Prss41Q920S2 322 aa10.26□□□□□ -0.77
Retrieved 100 of 22,080 RNA–protein pairs in 69.2 ms