Protein–RNA interactions for Protein: A0A075B6C4

Trav21-dv12, T cell receptor alpha variable 21-DV12 (Fragment), mousemouse

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav21-dv12A0A075B6C4 Gm25239-201ENSMUST00000174915 86 ntBASIC27.37■■□□□ 1.97
Trav21-dv12A0A075B6C4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
Trav21-dv12A0A075B6C4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Trav21-dv12A0A075B6C4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
Trav21-dv12A0A075B6C4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
Trav21-dv12A0A075B6C4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Trav21-dv12A0A075B6C4 Gm15042-201ENSMUST00000120212 883 ntBASIC24.4■■□□□ 1.5
Trav21-dv12A0A075B6C4 Psd-208ENSMUST00000224556 2034 ntBASIC24.31■■□□□ 1.48
Trav21-dv12A0A075B6C4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trav21-dv12A0A075B6C4 Gm15045-201ENSMUST00000117359 883 ntBASIC23.91■■□□□ 1.42
Trav21-dv12A0A075B6C4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trav21-dv12A0A075B6C4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trav21-dv12A0A075B6C4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC23.67■■□□□ 1.38
Trav21-dv12A0A075B6C4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trav21-dv12A0A075B6C4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trav21-dv12A0A075B6C4 Gm24109-201ENSMUST00000175489 103 ntBASIC23.46■■□□□ 1.35
Trav21-dv12A0A075B6C4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Trav21-dv12A0A075B6C4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trav21-dv12A0A075B6C4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trav21-dv12A0A075B6C4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trav21-dv12A0A075B6C4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trav21-dv12A0A075B6C4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trav21-dv12A0A075B6C4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Trav21-dv12A0A075B6C4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trav21-dv12A0A075B6C4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
Trav21-dv12A0A075B6C4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trav21-dv12A0A075B6C4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC22.97■■□□□ 1.27
Trav21-dv12A0A075B6C4 Gm23366-201ENSMUST00000175022 89 ntBASIC22.94■■□□□ 1.26
Trav21-dv12A0A075B6C4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Trav21-dv12A0A075B6C4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trav21-dv12A0A075B6C4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trav21-dv12A0A075B6C4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Trav21-dv12A0A075B6C4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC22.8■■□□□ 1.24
Trav21-dv12A0A075B6C4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Trav21-dv12A0A075B6C4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trav21-dv12A0A075B6C4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Trav21-dv12A0A075B6C4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Trav21-dv12A0A075B6C4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trav21-dv12A0A075B6C4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trav21-dv12A0A075B6C4 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trav21-dv12A0A075B6C4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC22.43■■□□□ 1.18
Trav21-dv12A0A075B6C4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
Trav21-dv12A0A075B6C4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC22.39■■□□□ 1.18
Trav21-dv12A0A075B6C4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC22.33■■□□□ 1.17
Trav21-dv12A0A075B6C4 Gm10524-201ENSMUST00000181931 1893 ntBASIC22.28■■□□□ 1.16
Trav21-dv12A0A075B6C4 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
Trav21-dv12A0A075B6C4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trav21-dv12A0A075B6C4 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Trav21-dv12A0A075B6C4 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trav21-dv12A0A075B6C4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Trav21-dv12A0A075B6C4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Trav21-dv12A0A075B6C4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trav21-dv12A0A075B6C4 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trav21-dv12A0A075B6C4 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trav21-dv12A0A075B6C4 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21.78■■□□□ 1.08
Trav21-dv12A0A075B6C4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC21.78■■□□□ 1.08
Trav21-dv12A0A075B6C4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trav21-dv12A0A075B6C4 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav21-dv12A0A075B6C4 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC21.71■■□□□ 1.07
Trav21-dv12A0A075B6C4 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trav21-dv12A0A075B6C4 Gm42596-201ENSMUST00000196305 1958 ntBASIC21.65■■□□□ 1.06
Trav21-dv12A0A075B6C4 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trav21-dv12A0A075B6C4 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Trav21-dv12A0A075B6C4 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trav21-dv12A0A075B6C4 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trav21-dv12A0A075B6C4 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC21.59■■□□□ 1.05
Trav21-dv12A0A075B6C4 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Trav21-dv12A0A075B6C4 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trav21-dv12A0A075B6C4 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC21.51■■□□□ 1.03
Trav21-dv12A0A075B6C4 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trav21-dv12A0A075B6C4 Gm27325-201ENSMUST00000175467 74 ntBASIC21.45■■□□□ 1.02
Trav21-dv12A0A075B6C4 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Trav21-dv12A0A075B6C4 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Trav21-dv12A0A075B6C4 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
Trav21-dv12A0A075B6C4 Gm25238-201ENSMUST00000174914 89 ntBASIC21.42■■□□□ 1.02
Trav21-dv12A0A075B6C4 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Trav21-dv12A0A075B6C4 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Trav21-dv12A0A075B6C4 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC21.38■■□□□ 1.01
Trav21-dv12A0A075B6C4 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trav21-dv12A0A075B6C4 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav21-dv12A0A075B6C4 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav21-dv12A0A075B6C4 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav21-dv12A0A075B6C4 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav21-dv12A0A075B6C4 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trav21-dv12A0A075B6C4 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Trav21-dv12A0A075B6C4 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC21.25■□□□□ 0.99
Trav21-dv12A0A075B6C4 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav21-dv12A0A075B6C4 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav21-dv12A0A075B6C4 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trav21-dv12A0A075B6C4 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav21-dv12A0A075B6C4 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav21-dv12A0A075B6C4 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Trav21-dv12A0A075B6C4 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trav21-dv12A0A075B6C4 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trav21-dv12A0A075B6C4 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trav21-dv12A0A075B6C4 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
Trav21-dv12A0A075B6C4 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav21-dv12A0A075B6C4 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav21-dv12A0A075B6C4 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trav21-dv12A0A075B6C4 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 78.2 ms