RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 KANTRA0A1W2PQU2 76 aa-0.83□□□□□ -2.54
VPS35-212ENST00000640313 MT1FP04733 61 aa-0.83□□□□□ -2.54
VPS35-212ENST00000640313 S100A8P05109 93 aa-0.83□□□□□ -2.54
VPS35-212ENST00000640313 V9GYS6 101 aa-0.83□□□□□ -2.54
VPS35-212ENST00000640313 HFM1A2PYH4 1435 aa-0.83□□□□□ -2.54
VPS35-212ENST00000640313 LRRIQ1Q96JM4 1722 aa-0.84□□□□□ -2.54
VPS35-212ENST00000640313 KDM5DQ9BY66 1539 aa-0.84□□□□□ -2.54
VPS35-212ENST00000640313 DEFB114Q30KQ6 69 aa-0.84□□□□□ -2.54
VPS35-212ENST00000640313 ST20Q9HBF5 79 aa-0.84□□□□□ -2.54
VPS35-212ENST00000640313 TTC37Q6PGP7 1564 aa-0.84□□□□□ -2.54
VPS35-212ENST00000640313 ABCC3O15438 1527 aa-0.84□□□□□ -2.54
VPS35-212ENST00000640313 CLASP1Q7Z460 1538 aa-0.84□□□□□ -2.54
VPS35-212ENST00000640313 KIF14Q15058 1648 aa-0.85□□□□□ -2.55
VPS35-212ENST00000640313 CEP350Q5VT06 3117 aa-0.85□□□□□ -2.55
VPS35-212ENST00000640313 H3BUT2 72 aa-0.85□□□□□ -2.55
VPS35-212ENST00000640313 CENPEQ02224 2701 aa-0.85□□□□□ -2.55
VPS35-212ENST00000640313 ABCC6O95255 1503 aa-0.85□□□□□ -2.55
VPS35-212ENST00000640313 ERVK-7P63135 1459 aa-0.86□□□□□ -2.55
VPS35-212ENST00000640313 DNMBPQ6XZF7 1577 aa-0.86□□□□□ -2.55
VPS35-212ENST00000640313 DEFB136Q30KP8 78 aa-0.86□□□□□ -2.55
VPS35-212ENST00000640313 LEAP2Q969E1 77 aa-0.86□□□□□ -2.55
VPS35-212ENST00000640313 Q9H521 79 aa-0.86□□□□□ -2.55
VPS35-212ENST00000640313 MAP3K4Q9Y6R4 1608 aa-0.86□□□□□ -2.55
VPS35-212ENST00000640313 DIP2AQ14689 1571 aa-0.87□□□□□ -2.55
VPS35-212ENST00000640313 CROCC2H7BZ55 1655 aa-0.87□□□□□ -2.55
VPS35-212ENST00000640313 CFAP43Q8NDM7 1665 aa-0.87□□□□□ -2.55
VPS35-212ENST00000640313 UACAQ9BZF9 1416 aa-0.87□□□□□ -2.55
VPS35-212ENST00000640313 AKAP12Q02952 1782 aa-0.87□□□□□ -2.55
VPS35-212ENST00000640313 ADIRFQ15847 76 aa-0.87□□□□□ -2.55
VPS35-212ENST00000640313 C18orf32Q8TCD1 76 aa-0.87□□□□□ -2.55
VPS35-212ENST00000640313 KAAG1Q9UBP8 84 aa-0.87□□□□□ -2.55
VPS35-212ENST00000640313 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.87□□□□□ -2.55
VPS35-212ENST00000640313 NHSQ6T4R5 1651 aa-0.88□□□□□ -2.55
VPS35-212ENST00000640313 A0A1B0GUL6 1792 aa-0.88□□□□□ -2.55
VPS35-212ENST00000640313 LMTK2Q8IWU2 1503 aa-0.88□□□□□ -2.55
VPS35-212ENST00000640313 RPS29P62273 56 aaKnown RBP-0.88□□□□□ -2.55
VPS35-212ENST00000640313 KRTAP19-6Q3LI70 58 aa-0.88□□□□□ -2.55
VPS35-212ENST00000640313 GLI2P10070 1586 aa-0.88□□□□□ -2.55
VPS35-212ENST00000640313 ABCC1P33527 1531 aa-0.89□□□□□ -2.55
VPS35-212ENST00000640313 MYO5CQ9NQX4 1742 aa-0.89□□□□□ -2.55
VPS35-212ENST00000640313 H3BVH4 76 aa-0.89□□□□□ -2.55
VPS35-212ENST00000640313 PPLO60437 1756 aa-0.89□□□□□ -2.55
VPS35-212ENST00000640313 WDFY4Q6ZS81 3184 aa-0.89□□□□□ -2.55
VPS35-212ENST00000640313 ANKARQ7Z5J8 1434 aa-0.89□□□□□ -2.55
VPS35-212ENST00000640313 DNAH12Q6ZR08 3092 aa-0.9□□□□□ -2.55
VPS35-212ENST00000640313 EP400Q96L91 3159 aa-0.9□□□□□ -2.55
VPS35-212ENST00000640313 ABRACLQ9P1F3 81 aa-0.9□□□□□ -2.55
VPS35-212ENST00000640313 MUC3AQ02505 3323 aa-0.9□□□□□ -2.55
VPS35-212ENST00000640313 KIF21BO75037 1637 aa-0.9□□□□□ -2.55
VPS35-212ENST00000640313 CEP250Q9BV73 2442 aa-0.9□□□□□ -2.55
VPS35-212ENST00000640313 TIAM1Q13009 1591 aa-0.91□□□□□ -2.55
VPS35-212ENST00000640313 DNAH14Q0VDD8 3507 aa-0.91□□□□□ -2.55
VPS35-212ENST00000640313 SMIM27A0A1W2PRY6 76 aa-0.91□□□□□ -2.56
VPS35-212ENST00000640313 ATXN8Q156A1 80 aa-0.91□□□□□ -2.56
VPS35-212ENST00000640313 LINC00308Q8TCZ7 52 aa-0.91□□□□□ -2.56
VPS35-212ENST00000640313 S100A13Q99584 98 aa-0.91□□□□□ -2.56
VPS35-212ENST00000640313 HILPDAQ9Y5L2 63 aa-0.91□□□□□ -2.56
VPS35-212ENST00000640313 PEG3Q9GZU2 1588 aa-0.91□□□□□ -2.56
VPS35-212ENST00000640313 DCAF1Q9Y4B6 1507 aa-0.92□□□□□ -2.56
VPS35-212ENST00000640313 K7EMI3 77 aa-0.92□□□□□ -2.56
VPS35-212ENST00000640313 POLR2KP53803 58 aaKnown RBP-0.92□□□□□ -2.56
VPS35-212ENST00000640313 C3P01024 1663 aa-0.92□□□□□ -2.56
VPS35-212ENST00000640313 CFAP74Q9C0B2 1584 aa-0.92□□□□□ -2.56
VPS35-212ENST00000640313 PREX2Q70Z35 1606 aa-0.93□□□□□ -2.56
VPS35-212ENST00000640313 WFDC10BQ8IUB3 73 aa-0.93□□□□□ -2.56
VPS35-212ENST00000640313 TMEM167BQ9NRX6 74 aa-0.93□□□□□ -2.56
VPS35-212ENST00000640313 MKI67P46013 3256 aaKnown RBP-0.93□□□□□ -2.56
VPS35-212ENST00000640313 RRBP1Q9P2E9 1410 aaKnown RBP-0.93□□□□□ -2.56
VPS35-212ENST00000640313 CFAP47Q6ZTR5 3102 aa-0.93□□□□□ -2.56
VPS35-212ENST00000640313 FAM208AQ9UK61 1670 aaKnown RBP-0.94□□□□□ -2.56
VPS35-212ENST00000640313 DCHS1Q96JQ0 3298 aa-0.94□□□□□ -2.56
VPS35-212ENST00000640313 LINC01549A6NIU2 74 aa-0.94□□□□□ -2.56
VPS35-212ENST00000640313 IGIPA6NJ69 53 aa-0.94□□□□□ -2.56
VPS35-212ENST00000640313 M0R1W7 72 aa-0.94□□□□□ -2.56
VPS35-212ENST00000640313 MROH1Q8NDA8 1641 aa-0.95□□□□□ -2.56
VPS35-212ENST00000640313 GNG2P59768 71 aa-0.95□□□□□ -2.56
VPS35-212ENST00000640313 DEFB131AP59861 70 aa-0.95□□□□□ -2.56
VPS35-212ENST00000640313 USP34Q70CQ2 3546 aa-0.95□□□□□ -2.56
VPS35-212ENST00000640313 ABCA8O94911 1581 aa-0.96□□□□□ -2.56
VPS35-212ENST00000640313 EEA1Q15075 1411 aa-0.96□□□□□ -2.56
VPS35-212ENST00000640313 MADDQ8WXG6 1647 aa-0.97□□□□□ -2.56
VPS35-212ENST00000640313 GNG13Q9P2W3 67 aa-0.97□□□□□ -2.56
VPS35-212ENST00000640313 NMES1Q9C002 83 aa-0.98□□□□□ -2.57
VPS35-212ENST00000640313 ABCA9Q8IUA7 1624 aa-0.98□□□□□ -2.57
VPS35-212ENST00000640313 UNC80Q8N2C7 3258 aa-0.98□□□□□ -2.57
VPS35-212ENST00000640313 EFCAB6Q5THR3 1501 aa-0.99□□□□□ -2.57
VPS35-212ENST00000640313 ALS2Q96Q42 1657 aa-0.99□□□□□ -2.57
VPS35-212ENST00000640313 SERF2P84101 59 aa-0.99□□□□□ -2.57
VPS35-212ENST00000640313 CCDC18Q5T9S5 1454 aa-0.99□□□□□ -2.57
VPS35-212ENST00000640313 DUOX2Q9NRD8 1548 aa-0.99□□□□□ -2.57
VPS35-212ENST00000640313 H0YGX0 51 aa-1□□□□□ -2.57
VPS35-212ENST00000640313 TFF3Q07654 80 aa-1□□□□□ -2.57
VPS35-212ENST00000640313 LOC400499M0QZD8 3231 aa-1□□□□□ -2.57
VPS35-212ENST00000640313 ABCA6Q8N139 1617 aa-1□□□□□ -2.57
VPS35-212ENST00000640313 SYCP2Q9BX26 1530 aa-1.01□□□□□ -2.57
VPS35-212ENST00000640313 UGGT2Q9NYU1 1516 aa-1.01□□□□□ -2.57
VPS35-212ENST00000640313 IQGAP3Q86VI3 1631 aa-1.02□□□□□ -2.57
VPS35-212ENST00000640313 RB1CC1Q8TDY2 1594 aa-1.03□□□□□ -2.57
VPS35-212ENST00000640313 PDCD5O14737 125 aa-1.03□□□□□ -2.57
VPS35-212ENST00000640313 SMCO4Q9NRQ5 59 aa-1.03□□□□□ -2.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms