RNA–Protein interactions for RNA: ENST00000638375.1

HLA-A-209, Transcript of major histocompatibility complex, class I, A, humanhuman

BASIC

Gene HLA-A, Length 975 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-A-209ENST00000638375 MT1FP04733 61 aa9.18□□□□□ -0.94
HLA-A-209ENST00000638375 LCE2DQ5TA82 110 aaPredicted RBP9.13□□□□□ -0.95
HLA-A-209ENST00000638375 SPANXA2-OT1Q8N9U9 137 aa9.13□□□□□ -0.95
HLA-A-209ENST00000638375 NDUFC1O43677 76 aa9.12□□□□□ -0.95
HLA-A-209ENST00000638375 CYSTM1Q9H1C7 97 aa9.12□□□□□ -0.95
HLA-A-209ENST00000638375 KRTAP10-10P60014 251 aa9.11□□□□□ -0.95
HLA-A-209ENST00000638375 KRTAP9-2Q9BYQ4 174 aa9.11□□□□□ -0.95
HLA-A-209ENST00000638375 ACYP2P14621 99 aa9.08□□□□□ -0.96
HLA-A-209ENST00000638375 CCDC179H3BU77 68 aa9.05□□□□□ -0.96
HLA-A-209ENST00000638375 H7BZZ5 65 aa9.05□□□□□ -0.96
HLA-A-209ENST00000638375 KRTAP9-3Q9BYQ3 159 aa9.02□□□□□ -0.97
HLA-A-209ENST00000638375 H0YAA0 97 aa8.92□□□□□ -0.98
HLA-A-209ENST00000638375 CHKB-CPT1BH3BT56 60 aa8.92□□□□□ -0.98
HLA-A-209ENST00000638375 LCE2BO14633 110 aa8.88□□□□□ -0.99
HLA-A-209ENST00000638375 COA5Q86WW8 74 aa8.87□□□□□ -0.99
HLA-A-209ENST00000638375 ADM2Q7Z4H4 148 aa8.85□□□□□ -0.99
HLA-A-209ENST00000638375 SPTSSBQ8NFR3 76 aa8.85□□□□□ -0.99
HLA-A-209ENST00000638375 KRTAP19-1Q8IUB9 90 aa8.8□□□□□ -1
HLA-A-209ENST00000638375 USH2AO75445 5202 aa8.79□□□□□ -1
HLA-A-209ENST00000638375 KRTAP3-2Q9BYR7 98 aa8.77□□□□□ -1.01
HLA-A-209ENST00000638375 P0C880 135 aa8.75□□□□□ -1.01
HLA-A-209ENST00000638375 SPRR2GQ9BYE4 73 aa8.74□□□□□ -1.01
HLA-A-209ENST00000638375 CRIPTQ9P021 101 aa8.74□□□□□ -1.01
HLA-A-209ENST00000638375 ATP5EP56381 51 aaPredicted RBP8.73□□□□□ -1.01
HLA-A-209ENST00000638375 TMEM258P61165 79 aa8.7□□□□□ -1.02
HLA-A-209ENST00000638375 FSIP2Q5CZC0 6907 aa8.7□□□□□ -1.02
HLA-A-209ENST00000638375 CRCT1Q9UGL9 99 aa8.68□□□□□ -1.02
HLA-A-209ENST00000638375 KRTAP9-6A0A140TA67 174 aa8.63□□□□□ -1.03
HLA-A-209ENST00000638375 SSPOA2VEC9 5147 aa8.63□□□□□ -1.03
HLA-A-209ENST00000638375 KRTAP19-8Q3LI54 63 aa8.62□□□□□ -1.03
HLA-A-209ENST00000638375 MT1BP07438 61 aa8.57□□□□□ -1.04
HLA-A-209ENST00000638375 PCP4P48539 62 aa8.56□□□□□ -1.04
HLA-A-209ENST00000638375 R4GN34 69 aa8.56□□□□□ -1.04
HLA-A-209ENST00000638375 M0QZ58 72 aa8.54□□□□□ -1.04
HLA-A-209ENST00000638375 Q5VV11 94 aa8.54□□□□□ -1.04
HLA-A-209ENST00000638375 KRTAP19-6Q3LI70 58 aa8.46□□□□□ -1.06
HLA-A-209ENST00000638375 SEC61GP60059 68 aa8.45□□□□□ -1.06
HLA-A-209ENST00000638375 SERP1Q9Y6X1 66 aa8.44□□□□□ -1.06
HLA-A-209ENST00000638375 KRTAP13-4Q3LI77 160 aa8.39□□□□□ -1.07
HLA-A-209ENST00000638375 LINC01554Q52M75 96 aa8.38□□□□□ -1.07
HLA-A-209ENST00000638375 A0A1B0GU69 56 aa8.37□□□□□ -1.07
HLA-A-209ENST00000638375 FCGBPQ9Y6R7 5405 aaPredicted RBP8.33□□□□□ -1.08
HLA-A-209ENST00000638375 LINC01558Q9Y6Z2 57 aa8.32□□□□□ -1.08
HLA-A-209ENST00000638375 A0A1B0GU33 70 aa8.3□□□□□ -1.08
HLA-A-209ENST00000638375 SVIPQ8NHG7 77 aa8.29□□□□□ -1.08
HLA-A-209ENST00000638375 PLAC4Q8WY50 150 aa8.28□□□□□ -1.08
HLA-A-209ENST00000638375 KRTAP10-5P60370 271 aa8.24□□□□□ -1.09
HLA-A-209ENST00000638375 SPATA8Q6RVD6 105 aa8.24□□□□□ -1.09
HLA-A-209ENST00000638375 PRR15LQ9BU68 103 aa8.24□□□□□ -1.09
HLA-A-209ENST00000638375 A6NN06 94 aa8.23□□□□□ -1.09
HLA-A-209ENST00000638375 A0A0D9SG42 100 aa8.15□□□□□ -1.1
HLA-A-209ENST00000638375 MT1XP80297 61 aa8.15□□□□□ -1.1
HLA-A-209ENST00000638375 RPS28P62857 69 aaKnown RBP8.12□□□□□ -1.11
HLA-A-209ENST00000638375 SMIM26A0A096LP01 95 aa8.11□□□□□ -1.11
HLA-A-209ENST00000638375 Q1T7F1 81 aa8.1□□□□□ -1.11
HLA-A-209ENST00000638375 V9GYY9 64 aa8.1□□□□□ -1.11
HLA-A-209ENST00000638375 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.08□□□□□ -1.12
HLA-A-209ENST00000638375 PRO2289Q9P1D8 64 aa8.07□□□□□ -1.12
HLA-A-209ENST00000638375 A8MU10 97 aa8.05□□□□□ -1.12
HLA-A-209ENST00000638375 PSPHP1O15172 72 aa8.02□□□□□ -1.13
HLA-A-209ENST00000638375 KRTAP12-1P59990 96 aa8.01□□□□□ -1.13
HLA-A-209ENST00000638375 UQCR11O14957 56 aa7.99□□□□□ -1.13
HLA-A-209ENST00000638375 SPINT4Q6UDR6 99 aa7.99□□□□□ -1.13
HLA-A-209ENST00000638375 KRTAP12-2P59991 146 aa7.96□□□□□ -1.14
HLA-A-209ENST00000638375 MACF1Q9UPN3 7388 aaKnown RBP7.94□□□□□ -1.14
HLA-A-209ENST00000638375 CAMK2N1Q7Z7J9 78 aa7.94□□□□□ -1.14
HLA-A-209ENST00000638375 MIR22HGQ0VDD5 57 aa7.87□□□□□ -1.15
HLA-A-209ENST00000638375 KRTAP9-7A8MTY7 169 aa7.82□□□□□ -1.16
HLA-A-209ENST00000638375 KRTAP10-7P60409 375 aaPredicted RBP7.79□□□□□ -1.16
HLA-A-209ENST00000638375 SYNE2Q8WXH0 6885 aaKnown RBP7.77□□□□□ -1.17
HLA-A-209ENST00000638375 A6NED7 52 aa7.76□□□□□ -1.17
HLA-A-209ENST00000638375 KRTAP10-12P60413 245 aa7.73□□□□□ -1.17
HLA-A-209ENST00000638375 KRTAP6-3Q3LI67 103 aa7.7□□□□□ -1.18
HLA-A-209ENST00000638375 KMT2DO14686 5537 aa7.68□□□□□ -1.18
HLA-A-209ENST00000638375 KRTAP4-8A0A0G2JLE6 195 aa7.65□□□□□ -1.18
HLA-A-209ENST00000638375 KRTAP4-8Q9BYQ9 185 aa7.65□□□□□ -1.18
HLA-A-209ENST00000638375 C10orf95Q9H7T3 257 aa7.63□□□□□ -1.19
HLA-A-209ENST00000638375 K7ERS5 55 aa7.58□□□□□ -1.2
HLA-A-209ENST00000638375 KRTAP5-9P26371 169 aa7.57□□□□□ -1.2
HLA-A-209ENST00000638375 KRTAP8-1Q8IUC2 63 aa7.57□□□□□ -1.2
HLA-A-209ENST00000638375 CDC42SE1Q9NRR8 79 aa7.53□□□□□ -1.2
HLA-A-209ENST00000638375 TNP1P09430 55 aa7.46□□□□□ -1.22
HLA-A-209ENST00000638375 SPRR2FQ96RM1 72 aa7.45□□□□□ -1.22
HLA-A-209ENST00000638375 MUC12Q9UKN1 5478 aa7.42□□□□□ -1.22
HLA-A-209ENST00000638375 LCE3AQ5TA76 89 aa7.3□□□□□ -1.24
HLA-A-209ENST00000638375 NEBP20929 6669 aa7.29□□□□□ -1.24
HLA-A-209ENST00000638375 KRTAP25-1Q3LHN0 102 aa7.28□□□□□ -1.24
HLA-A-209ENST00000638375 KRTAP19-7Q3SYF9 63 aa7.28□□□□□ -1.24
HLA-A-209ENST00000638375 MDN1Q9NU22 5596 aa7.28□□□□□ -1.24
HLA-A-209ENST00000638375 SPRR2EP22531 72 aa7.22□□□□□ -1.25
HLA-A-209ENST00000638375 SPRR2BP35325 72 aa7.22□□□□□ -1.25
HLA-A-209ENST00000638375 SPRR2AP35326 72 aa7.22□□□□□ -1.25
HLA-A-209ENST00000638375 KRTAP19-5Q3LI72 72 aa7.22□□□□□ -1.25
HLA-A-209ENST00000638375 BRK1Q8WUW1 75 aa7.22□□□□□ -1.25
HLA-A-209ENST00000638375 ROMO1P60602 79 aa7.21□□□□□ -1.26
HLA-A-209ENST00000638375 LCE1AQ5T7P2 110 aa7.21□□□□□ -1.26
HLA-A-209ENST00000638375 MT1EP04732 61 aa7.19□□□□□ -1.26
HLA-A-209ENST00000638375 KRTAP23-1A1A580 65 aa7.03□□□□□ -1.28
HLA-A-209ENST00000638375 KRTAP19-3Q7Z4W3 81 aa7.01□□□□□ -1.29
HLA-A-209ENST00000638375 KRTAP12-3P60328 96 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms