RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 FAM236BA0A1B0GV22 79 aa9.61□□□□□ -0.87
CLN3-240ENST00000631023 KRTAP3-3Q9BYR6 98 aa9.6□□□□□ -0.87
CLN3-240ENST00000631023 SMIM20Q8N5G0 67 aa9.58□□□□□ -0.88
CLN3-240ENST00000631023 NDUFC1O43677 76 aa9.55□□□□□ -0.88
CLN3-240ENST00000631023 TRAV7A0A075B6U4 112 aa9.53□□□□□ -0.88
CLN3-240ENST00000631023 SSPOA2VEC9 5147 aa9.5□□□□□ -0.89
CLN3-240ENST00000631023 KRTAP19-1Q8IUB9 90 aa9.42□□□□□ -0.9
CLN3-240ENST00000631023 DMAC1Q96GE9 116 aa9.41□□□□□ -0.9
CLN3-240ENST00000631023 H0YAA0 97 aa9.37□□□□□ -0.91
CLN3-240ENST00000631023 SPRR2GQ9BYE4 73 aa9.35□□□□□ -0.91
CLN3-240ENST00000631023 CRIPTQ9P021 101 aa9.34□□□□□ -0.91
CLN3-240ENST00000631023 KRTAP19-6Q3LI70 58 aa9.33□□□□□ -0.92
CLN3-240ENST00000631023 FCGBPQ9Y6R7 5405 aaPredicted RBP9.3□□□□□ -0.92
CLN3-240ENST00000631023 SERP2Q8N6R1 65 aa9.29□□□□□ -0.92
CLN3-240ENST00000631023 ACYP2P14621 99 aa9.29□□□□□ -0.92
CLN3-240ENST00000631023 SNURFQ9Y675 71 aa9.28□□□□□ -0.92
CLN3-240ENST00000631023 ADM2Q7Z4H4 148 aa9.27□□□□□ -0.93
CLN3-240ENST00000631023 Q5VV11 94 aa9.24□□□□□ -0.93
CLN3-240ENST00000631023 KRTAP19-8Q3LI54 63 aa9.23□□□□□ -0.93
CLN3-240ENST00000631023 C20orf197Q8N268 126 aa9.23□□□□□ -0.93
CLN3-240ENST00000631023 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.2□□□□□ -0.94
CLN3-240ENST00000631023 MT1BP07438 61 aa9.17□□□□□ -0.94
CLN3-240ENST00000631023 SPANXA2-OT1Q8N9U9 137 aa9.16□□□□□ -0.94
CLN3-240ENST00000631023 SPTSSBQ8NFR3 76 aa9.15□□□□□ -0.95
CLN3-240ENST00000631023 CHKB-CPT1BH3BT56 60 aa9.12□□□□□ -0.95
CLN3-240ENST00000631023 COX7CP15954 63 aa9.07□□□□□ -0.96
CLN3-240ENST00000631023 P0C880 135 aa9.06□□□□□ -0.96
CLN3-240ENST00000631023 R4GN34 69 aa9.05□□□□□ -0.96
CLN3-240ENST00000631023 A6NN06 94 aa9.03□□□□□ -0.96
CLN3-240ENST00000631023 KRTAP3-2Q9BYR7 98 aa9.02□□□□□ -0.97
CLN3-240ENST00000631023 KRTAP9-7A8MTY7 169 aa9.01□□□□□ -0.97
CLN3-240ENST00000631023 M0QZ58 72 aa8.97□□□□□ -0.97
CLN3-240ENST00000631023 MACF1Q9UPN3 7388 aaKnown RBP8.97□□□□□ -0.97
CLN3-240ENST00000631023 KRTAP10-5P60370 271 aa8.94□□□□□ -0.98
CLN3-240ENST00000631023 ANAPC13Q9BS18 74 aa8.9□□□□□ -0.99
CLN3-240ENST00000631023 PLAC4Q8WY50 150 aa8.89□□□□□ -0.99
CLN3-240ENST00000631023 SYNE2Q8WXH0 6885 aaKnown RBP8.87□□□□□ -0.99
CLN3-240ENST00000631023 COA5Q86WW8 74 aa8.86□□□□□ -0.99
CLN3-240ENST00000631023 H7BZZ5 65 aa8.86□□□□□ -0.99
CLN3-240ENST00000631023 LINC01554Q52M75 96 aa8.82□□□□□ -1
CLN3-240ENST00000631023 CYSTM1Q9H1C7 97 aa8.82□□□□□ -1
CLN3-240ENST00000631023 PRO2289Q9P1D8 64 aa8.78□□□□□ -1
CLN3-240ENST00000631023 KRTAP6-3Q3LI67 103 aa8.7□□□□□ -1.02
CLN3-240ENST00000631023 SEC61GP60059 68 aa8.69□□□□□ -1.02
CLN3-240ENST00000631023 MT1XP80297 61 aa8.68□□□□□ -1.02
CLN3-240ENST00000631023 CCDC179H3BU77 68 aa8.66□□□□□ -1.02
CLN3-240ENST00000631023 PCP4P48539 62 aa8.66□□□□□ -1.02
CLN3-240ENST00000631023 SERP1Q9Y6X1 66 aa8.65□□□□□ -1.02
CLN3-240ENST00000631023 ATP5EP56381 51 aaPredicted RBP8.55□□□□□ -1.04
CLN3-240ENST00000631023 KRTAP13-4Q3LI77 160 aa8.55□□□□□ -1.04
CLN3-240ENST00000631023 A0A1B0GU33 70 aa8.47□□□□□ -1.05
CLN3-240ENST00000631023 KRTAP12-2P59991 146 aa8.45□□□□□ -1.06
CLN3-240ENST00000631023 A0A1B0GU69 56 aa8.44□□□□□ -1.06
CLN3-240ENST00000631023 KRTAP5-9P26371 169 aa8.4□□□□□ -1.06
CLN3-240ENST00000631023 TMEM258P61165 79 aa8.39□□□□□ -1.07
CLN3-240ENST00000631023 SPATA8Q6RVD6 105 aa8.39□□□□□ -1.07
CLN3-240ENST00000631023 CAMK2N1Q7Z7J9 78 aa8.37□□□□□ -1.07
CLN3-240ENST00000631023 A0A0D9SG42 100 aa8.36□□□□□ -1.07
CLN3-240ENST00000631023 KMT2DO14686 5537 aa8.35□□□□□ -1.07
CLN3-240ENST00000631023 MUC12Q9UKN1 5478 aa8.31□□□□□ -1.08
CLN3-240ENST00000631023 PRR15LQ9BU68 103 aa8.3□□□□□ -1.08
CLN3-240ENST00000631023 KRTAP8-1Q8IUC2 63 aa8.29□□□□□ -1.08
CLN3-240ENST00000631023 NEBP20929 6669 aa8.28□□□□□ -1.08
CLN3-240ENST00000631023 KRTAP10-7P60409 375 aaPredicted RBP8.28□□□□□ -1.08
CLN3-240ENST00000631023 KRTAP10-12P60413 245 aa8.26□□□□□ -1.09
CLN3-240ENST00000631023 SMIM26A0A096LP01 95 aa8.25□□□□□ -1.09
CLN3-240ENST00000631023 SPINT4Q6UDR6 99 aa8.25□□□□□ -1.09
CLN3-240ENST00000631023 SPRR2FQ96RM1 72 aa8.22□□□□□ -1.09
CLN3-240ENST00000631023 LINC01558Q9Y6Z2 57 aa8.22□□□□□ -1.09
CLN3-240ENST00000631023 KRTAP4-8A0A0G2JLE6 195 aa8.21□□□□□ -1.1
CLN3-240ENST00000631023 KRTAP4-8Q9BYQ9 185 aa8.21□□□□□ -1.1
CLN3-240ENST00000631023 KRTAP12-1P59990 96 aa8.18□□□□□ -1.1
CLN3-240ENST00000631023 MDN1Q9NU22 5596 aa8.12□□□□□ -1.11
CLN3-240ENST00000631023 A8MU10 97 aa8.11□□□□□ -1.11
CLN3-240ENST00000631023 SPRR2EP22531 72 aa8.05□□□□□ -1.12
CLN3-240ENST00000631023 SPRR2BP35325 72 aa8.05□□□□□ -1.12
CLN3-240ENST00000631023 SPRR2AP35326 72 aa8.05□□□□□ -1.12
CLN3-240ENST00000631023 UQCR11O14957 56 aa8.01□□□□□ -1.13
CLN3-240ENST00000631023 LCE1AQ5T7P2 110 aa7.96□□□□□ -1.14
CLN3-240ENST00000631023 KRTAP20-1Q3LI63 56 aa7.94□□□□□ -1.14
CLN3-240ENST00000631023 V9GYY9 64 aa7.94□□□□□ -1.14
CLN3-240ENST00000631023 Q1T7F1 81 aa7.86□□□□□ -1.15
CLN3-240ENST00000631023 MIR22HGQ0VDD5 57 aa7.84□□□□□ -1.15
CLN3-240ENST00000631023 KRTAP2-3P0C7H8 128 aa7.82□□□□□ -1.16
CLN3-240ENST00000631023 KRTAP2-4Q9BYR9 128 aa7.82□□□□□ -1.16
CLN3-240ENST00000631023 PSPHP1O15172 72 aa7.81□□□□□ -1.16
CLN3-240ENST00000631023 C10orf95Q9H7T3 257 aa7.8□□□□□ -1.16
CLN3-240ENST00000631023 TNP1P09430 55 aa7.79□□□□□ -1.16
CLN3-240ENST00000631023 SPRR2DP22532 72 aa7.78□□□□□ -1.16
CLN3-240ENST00000631023 RPS28P62857 69 aaKnown RBP7.75□□□□□ -1.17
CLN3-240ENST00000631023 KRTAP19-7Q3SYF9 63 aa7.74□□□□□ -1.17
CLN3-240ENST00000631023 K7ERS5 55 aa7.69□□□□□ -1.18
CLN3-240ENST00000631023 MT1EP04732 61 aa7.67□□□□□ -1.18
CLN3-240ENST00000631023 KRTAP19-5Q3LI72 72 aa7.63□□□□□ -1.19
CLN3-240ENST00000631023 SVIPQ8NHG7 77 aa7.61□□□□□ -1.19
CLN3-240ENST00000631023 LCE3AQ5TA76 89 aa7.59□□□□□ -1.19
CLN3-240ENST00000631023 A6NED7 52 aa7.59□□□□□ -1.2
CLN3-240ENST00000631023 KRTAP2-2Q9BYT5 123 aa7.59□□□□□ -1.2
CLN3-240ENST00000631023 KRTAP2-1Q9BYU5 128 aa7.59□□□□□ -1.2
CLN3-240ENST00000631023 KRTAP19-3Q7Z4W3 81 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms