RNA–Protein interactions for RNA: ENST00000612467.1

PCDHGA3-202, Transcript of protocadherin gamma subfamily A, 3, humanhuman

TSL 2

Gene PCDHGA3, Length 2,712 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3-202ENST00000612467 LINC01554Q52M75 96 aa7.45□□□□□ -1.22
PCDHGA3-202ENST00000612467 LPAP08519 4548 aa7.42□□□□□ -1.22
PCDHGA3-202ENST00000612467 MIR22HGQ0VDD5 57 aa7.4□□□□□ -1.22
PCDHGA3-202ENST00000612467 SPATA8Q6RVD6 105 aa7.39□□□□□ -1.23
PCDHGA3-202ENST00000612467 UQCR11O14957 56 aa7.38□□□□□ -1.23
PCDHGA3-202ENST00000612467 CSAG1Q6PB30 78 aa7.38□□□□□ -1.23
PCDHGA3-202ENST00000612467 LRP2P98164 4655 aa7.34□□□□□ -1.23
PCDHGA3-202ENST00000612467 XP32Q5T750 250 aa7.34□□□□□ -1.23
PCDHGA3-202ENST00000612467 COX6B2Q6YFQ2 88 aa7.32□□□□□ -1.24
PCDHGA3-202ENST00000612467 MT1HL1P0DM35 61 aa7.32□□□□□ -1.24
PCDHGA3-202ENST00000612467 ABCA13Q86UQ4 5058 aa7.31□□□□□ -1.24
PCDHGA3-202ENST00000612467 RPL37P61927 97 aaKnown RBP7.29□□□□□ -1.24
PCDHGA3-202ENST00000612467 H0YAA0 97 aa7.28□□□□□ -1.24
PCDHGA3-202ENST00000612467 KRTAP4-5Q9BYR2 181 aa7.24□□□□□ -1.25
PCDHGA3-202ENST00000612467 A0A1B0GU33 70 aa7.21□□□□□ -1.26
PCDHGA3-202ENST00000612467 KRTAP3-3Q9BYR6 98 aa7.21□□□□□ -1.26
PCDHGA3-202ENST00000612467 H1FX-AS1Q4G0G2 97 aa7.18□□□□□ -1.26
PCDHGA3-202ENST00000612467 BIRC6Q9NR09 4857 aa7.1□□□□□ -1.27
PCDHGA3-202ENST00000612467 CRIPTQ9P021 101 aa7.1□□□□□ -1.27
PCDHGA3-202ENST00000612467 KRTAP10-6P60371 365 aaPredicted RBP7.09□□□□□ -1.27
PCDHGA3-202ENST00000612467 S4R3F8 94 aa7.09□□□□□ -1.27
PCDHGA3-202ENST00000612467 KRTAP13-4Q3LI77 160 aa7.08□□□□□ -1.28
PCDHGA3-202ENST00000612467 KRTAP3-2Q9BYR7 98 aa7.06□□□□□ -1.28
PCDHGA3-202ENST00000612467 P0C880 135 aa7.04□□□□□ -1.28
PCDHGA3-202ENST00000612467 A0A0D9SG42 100 aa7.04□□□□□ -1.28
PCDHGA3-202ENST00000612467 KRTAP25-1Q3LHN0 102 aa7.04□□□□□ -1.28
PCDHGA3-202ENST00000612467 ROMO1P60602 79 aa7□□□□□ -1.29
PCDHGA3-202ENST00000612467 HERC2O95714 4834 aa7□□□□□ -1.29
PCDHGA3-202ENST00000612467 TPRXLQ17RH7 258 aa7□□□□□ -1.29
PCDHGA3-202ENST00000612467 MUC17Q685J3 4493 aa6.92□□□□□ -1.3
PCDHGA3-202ENST00000612467 MUC2Q02817 5179 aa6.91□□□□□ -1.3
PCDHGA3-202ENST00000612467 KRTAP4-1Q9BYQ7 146 aa6.87□□□□□ -1.31
PCDHGA3-202ENST00000612467 A0A0A0MQY5 61 aa6.86□□□□□ -1.31
PCDHGA3-202ENST00000612467 J3QL48 77 aa6.85□□□□□ -1.31
PCDHGA3-202ENST00000612467 K7ERS5 55 aa6.83□□□□□ -1.32
PCDHGA3-202ENST00000612467 PCLOQ9Y6V0 5065 aa6.81□□□□□ -1.32
PCDHGA3-202ENST00000612467 KRTAP12-2P59991 146 aa6.81□□□□□ -1.32
PCDHGA3-202ENST00000612467 HERC1Q15751 4861 aa6.77□□□□□ -1.33
PCDHGA3-202ENST00000612467 SPINT4Q6UDR6 99 aa6.76□□□□□ -1.33
PCDHGA3-202ENST00000612467 SEC61BP60468 96 aaKnown RBP6.73□□□□□ -1.33
PCDHGA3-202ENST00000612467 KRTAP12-1P59990 96 aa6.71□□□□□ -1.33
PCDHGA3-202ENST00000612467 C10orf95Q9H7T3 257 aa6.71□□□□□ -1.34
PCDHGA3-202ENST00000612467 LORP23490 312 aaPredicted RBP6.7□□□□□ -1.34
PCDHGA3-202ENST00000612467 M0QZ58 72 aa6.66□□□□□ -1.34
PCDHGA3-202ENST00000612467 KRTAP19-2Q3LHN2 52 aa6.64□□□□□ -1.35
PCDHGA3-202ENST00000612467 NDUFAF8A1L188 74 aa6.61□□□□□ -1.35
PCDHGA3-202ENST00000612467 R4GN34 69 aa6.6□□□□□ -1.35
PCDHGA3-202ENST00000612467 FAT4Q6V0I7 4981 aa6.59□□□□□ -1.35
PCDHGA3-202ENST00000612467 HMCN2Q8NDA2 5059 aa6.57□□□□□ -1.36
PCDHGA3-202ENST00000612467 KRTAP15-1Q3LI76 137 aa6.55□□□□□ -1.36
PCDHGA3-202ENST00000612467 FLGP20930 4061 aaPredicted RBP6.5□□□□□ -1.37
PCDHGA3-202ENST00000612467 RNF213Q63HN8 5207 aa6.47□□□□□ -1.37
PCDHGA3-202ENST00000612467 UBR4Q5T4S7 5183 aa6.42□□□□□ -1.38
PCDHGA3-202ENST00000612467 LCE2CQ5TA81 110 aa6.31□□□□□ -1.4
PCDHGA3-202ENST00000612467 CAMK2N1Q7Z7J9 78 aa6.26□□□□□ -1.41
PCDHGA3-202ENST00000612467 LUZP6Q538Z0 58 aa6.24□□□□□ -1.41
PCDHGA3-202ENST00000612467 M0R2T5 61 aa6.18□□□□□ -1.42
PCDHGA3-202ENST00000612467 MT1HP80294 61 aa6.14□□□□□ -1.43
PCDHGA3-202ENST00000612467 KRTAP19-1Q8IUB9 90 aa6.08□□□□□ -1.44
PCDHGA3-202ENST00000612467 MT1FP04733 61 aa6.05□□□□□ -1.44
PCDHGA3-202ENST00000612467 PLAC4Q8WY50 150 aa6.05□□□□□ -1.44
PCDHGA3-202ENST00000612467 MT2AP02795 61 aa6.02□□□□□ -1.45
PCDHGA3-202ENST00000612467 KRTAP10-10P60014 251 aa6.01□□□□□ -1.45
PCDHGA3-202ENST00000612467 SPRR2GQ9BYE4 73 aa6□□□□□ -1.45
PCDHGA3-202ENST00000612467 KRTAP9-8Q9BYQ0 159 aa5.98□□□□□ -1.45
PCDHGA3-202ENST00000612467 TNP1P09430 55 aa5.94□□□□□ -1.46
PCDHGA3-202ENST00000612467 PP632Q6XCG6 107 aa5.88□□□□□ -1.47
PCDHGA3-202ENST00000612467 MT1BP07438 61 aa5.78□□□□□ -1.48
PCDHGA3-202ENST00000612467 USH2AO75445 5202 aa5.77□□□□□ -1.49
PCDHGA3-202ENST00000612467 LCE3AQ5TA76 89 aa5.76□□□□□ -1.49
PCDHGA3-202ENST00000612467 KRTAP19-8Q3LI54 63 aa5.74□□□□□ -1.49
PCDHGA3-202ENST00000612467 KRTAP10-5P60370 271 aa5.71□□□□□ -1.49
PCDHGA3-202ENST00000612467 KRTAP9-3Q9BYQ3 159 aa5.71□□□□□ -1.49
PCDHGA3-202ENST00000612467 MT1XP80297 61 aa5.71□□□□□ -1.5
PCDHGA3-202ENST00000612467 KRTAP23-1A1A580 65 aa5.67□□□□□ -1.5
PCDHGA3-202ENST00000612467 KRTAP10-7P60409 375 aaPredicted RBP5.61□□□□□ -1.51
PCDHGA3-202ENST00000612467 KMT2DO14686 5537 aa5.6□□□□□ -1.51
PCDHGA3-202ENST00000612467 LCE2BO14633 110 aa5.58□□□□□ -1.52
PCDHGA3-202ENST00000612467 SPRR5A0A1B0GTR4 108 aa5.57□□□□□ -1.52
PCDHGA3-202ENST00000612467 LCE2AQ5TA79 106 aaPredicted RBP5.56□□□□□ -1.52
PCDHGA3-202ENST00000612467 KRTAP10-12P60413 245 aa5.52□□□□□ -1.53
PCDHGA3-202ENST00000612467 KRTAP8-1Q8IUC2 63 aa5.49□□□□□ -1.53
PCDHGA3-202ENST00000612467 LCE2DQ5TA82 110 aaPredicted RBP5.49□□□□□ -1.53
PCDHGA3-202ENST00000612467 KRTAP12-3P60328 96 aa5.43□□□□□ -1.54
PCDHGA3-202ENST00000612467 PRO2289Q9P1D8 64 aa5.38□□□□□ -1.55
PCDHGA3-202ENST00000612467 FSIP2Q5CZC0 6907 aa5.37□□□□□ -1.55
PCDHGA3-202ENST00000612467 KRTAP4-8A0A0G2JLE6 195 aa5.36□□□□□ -1.55
PCDHGA3-202ENST00000612467 KRTAP4-8Q9BYQ9 185 aa5.36□□□□□ -1.55
PCDHGA3-202ENST00000612467 KRTAP19-5Q3LI72 72 aa5.32□□□□□ -1.56
PCDHGA3-202ENST00000612467 SSPOA2VEC9 5147 aa5.26□□□□□ -1.57
PCDHGA3-202ENST00000612467 KRTAP9-2Q9BYQ4 174 aa5.22□□□□□ -1.57
PCDHGA3-202ENST00000612467 INE1O15225 51 aa5.1□□□□□ -1.59
PCDHGA3-202ENST00000612467 KRTAP4-7Q9BYR0 210 aa5.1□□□□□ -1.59
PCDHGA3-202ENST00000612467 KRTAP19-7Q3SYF9 63 aa5.1□□□□□ -1.59
PCDHGA3-202ENST00000612467 LCE3CQ5T5A8 94 aa5.09□□□□□ -1.59
PCDHGA3-202ENST00000612467 KRTAP9-6A8MVA2 160 aa5.03□□□□□ -1.6
PCDHGA3-202ENST00000612467 FCGBPQ9Y6R7 5405 aaPredicted RBP4.98□□□□□ -1.61
PCDHGA3-202ENST00000612467 CRCT1Q9UGL9 99 aa4.95□□□□□ -1.62
PCDHGA3-202ENST00000612467 KRTAP9-6A0A140TA67 174 aa4.95□□□□□ -1.62
PCDHGA3-202ENST00000612467 MUC12Q9UKN1 5478 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 161.5 ms