RNA–Protein interactions for RNA: ENST00000611869.4

TCF3-220, Transcript of transcription factor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCF3, Length 4,409 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-220ENST00000611869 DNAH3Q8TD57 4116 aa6.41□□□□□ -1.38
TCF3-220ENST00000611869 KRTAP4-5Q9BYR2 181 aa6.41□□□□□ -1.38
TCF3-220ENST00000611869 DNAH2Q9P225 4427 aa6.4□□□□□ -1.38
TCF3-220ENST00000611869 DYNC1H1Q14204 4646 aaKnown RBP6.4□□□□□ -1.39
TCF3-220ENST00000611869 CMYA5Q8N3K9 4069 aa6.39□□□□□ -1.39
TCF3-220ENST00000611869 KRTAP10-6P60371 365 aaPredicted RBP6.39□□□□□ -1.39
TCF3-220ENST00000611869 KRTAP12-2P59991 146 aa6.38□□□□□ -1.39
TCF3-220ENST00000611869 TNP1P09430 55 aa6.37□□□□□ -1.39
TCF3-220ENST00000611869 LYSTQ99698 3801 aa6.37□□□□□ -1.39
TCF3-220ENST00000611869 KRTAP13-4Q3LI77 160 aa6.37□□□□□ -1.39
TCF3-220ENST00000611869 DNAH8Q96JB1 4490 aa6.36□□□□□ -1.39
TCF3-220ENST00000611869 KRTAP3-3Q9BYR6 98 aa6.31□□□□□ -1.4
TCF3-220ENST00000611869 KRTAP12-1P59990 96 aa6.3□□□□□ -1.4
TCF3-220ENST00000611869 KRTAP10-10P60014 251 aa6.3□□□□□ -1.4
TCF3-220ENST00000611869 DYNC2H1Q8NCM8 4307 aaKnown RBP6.26□□□□□ -1.41
TCF3-220ENST00000611869 KRTAP3-2Q9BYR7 98 aa6.24□□□□□ -1.41
TCF3-220ENST00000611869 DNAH7Q8WXX0 4024 aa6.24□□□□□ -1.41
TCF3-220ENST00000611869 PP632Q6XCG6 107 aa6.19□□□□□ -1.42
TCF3-220ENST00000611869 RYR1P21817 5038 aa6.18□□□□□ -1.42
TCF3-220ENST00000611869 VPS13BQ7Z7G8 4022 aa6.18□□□□□ -1.42
TCF3-220ENST00000611869 FRAS1Q86XX4 4008 aa6.17□□□□□ -1.42
TCF3-220ENST00000611869 DNAH6Q9C0G6 4158 aa6.17□□□□□ -1.42
TCF3-220ENST00000611869 KIAA1109Q2LD37 5005 aa6.16□□□□□ -1.42
TCF3-220ENST00000611869 SACSQ9NZJ4 4579 aa6.15□□□□□ -1.42
TCF3-220ENST00000611869 FAT2Q9NYQ8 4349 aa6.14□□□□□ -1.43
TCF3-220ENST00000611869 MYCBP2O75592 4640 aa6.13□□□□□ -1.43
TCF3-220ENST00000611869 HECTD4Q9Y4D8 3996 aa6.12□□□□□ -1.43
TCF3-220ENST00000611869 HYDINQ4G0P3 5121 aa6.08□□□□□ -1.44
TCF3-220ENST00000611869 APOBP04114 4563 aaKnown RBP6.05□□□□□ -1.44
TCF3-220ENST00000611869 RYR3Q15413 4870 aa6.05□□□□□ -1.44
TCF3-220ENST00000611869 LRP1Q07954 4544 aaKnown RBP6.04□□□□□ -1.44
TCF3-220ENST00000611869 KRTAP17-1Q9BYP8 105 aa5.96□□□□□ -1.45
TCF3-220ENST00000611869 PKHD1P08F94 4074 aa5.96□□□□□ -1.46
TCF3-220ENST00000611869 LORP23490 312 aaPredicted RBP5.95□□□□□ -1.46
TCF3-220ENST00000611869 FAT3Q8TDW7 4589 aa5.94□□□□□ -1.46
TCF3-220ENST00000611869 RYR2Q92736 4967 aa5.93□□□□□ -1.46
TCF3-220ENST00000611869 KRTAP4-1Q9BYQ7 146 aa5.92□□□□□ -1.46
TCF3-220ENST00000611869 PRO2289Q9P1D8 64 aa5.92□□□□□ -1.46
TCF3-220ENST00000611869 KMT2CQ8NEZ4 4911 aaKnown RBP5.82□□□□□ -1.48
TCF3-220ENST00000611869 PKD1P98161 4303 aa5.77□□□□□ -1.49
TCF3-220ENST00000611869 LRP2P98164 4655 aa5.73□□□□□ -1.49
TCF3-220ENST00000611869 HERC2O95714 4834 aa5.71□□□□□ -1.5
TCF3-220ENST00000611869 HSPG2P98160 4391 aa5.71□□□□□ -1.5
TCF3-220ENST00000611869 KRTAP15-1Q3LI76 137 aa5.65□□□□□ -1.5
TCF3-220ENST00000611869 MT1HP80294 61 aa5.55□□□□□ -1.52
TCF3-220ENST00000611869 KRTAP10-12P60413 245 aa5.54□□□□□ -1.52
TCF3-220ENST00000611869 LPAP08519 4548 aa5.51□□□□□ -1.53
TCF3-220ENST00000611869 EPPK1P58107 5090 aaKnown RBP5.5□□□□□ -1.53
TCF3-220ENST00000611869 LCE3AQ5TA76 89 aa5.5□□□□□ -1.53
TCF3-220ENST00000611869 MT2AP02795 61 aa5.48□□□□□ -1.53
TCF3-220ENST00000611869 BIRC6Q9NR09 4857 aa5.47□□□□□ -1.53
TCF3-220ENST00000611869 MT1FP04733 61 aa5.43□□□□□ -1.54
TCF3-220ENST00000611869 PKHD1L1Q86WI1 4243 aa5.42□□□□□ -1.54
TCF3-220ENST00000611869 TNXBP22105 4242 aa5.42□□□□□ -1.54
TCF3-220ENST00000611869 SPRR2GQ9BYE4 73 aa5.42□□□□□ -1.54
TCF3-220ENST00000611869 KRTAP12-3P60328 96 aa5.42□□□□□ -1.54
TCF3-220ENST00000611869 KRTAP23-1A1A580 65 aa5.41□□□□□ -1.54
TCF3-220ENST00000611869 ABCA13Q86UQ4 5058 aa5.4□□□□□ -1.55
TCF3-220ENST00000611869 HERC1Q15751 4861 aa5.33□□□□□ -1.56
TCF3-220ENST00000611869 PCLOQ9Y6V0 5065 aa5.3□□□□□ -1.56
TCF3-220ENST00000611869 KRTAP19-1Q8IUB9 90 aa5.29□□□□□ -1.56
TCF3-220ENST00000611869 LCE2CQ5TA81 110 aa5.24□□□□□ -1.57
TCF3-220ENST00000611869 KRTAP19-2Q3LHN2 52 aa5.19□□□□□ -1.58
TCF3-220ENST00000611869 KRTAP9-8Q9BYQ0 159 aa5.14□□□□□ -1.59
TCF3-220ENST00000611869 MUC17Q685J3 4493 aa5.14□□□□□ -1.59
TCF3-220ENST00000611869 CRCT1Q9UGL9 99 aa5.13□□□□□ -1.59
TCF3-220ENST00000611869 KRTAP19-8Q3LI54 63 aa5.11□□□□□ -1.59
TCF3-220ENST00000611869 MUC2Q02817 5179 aa5.07□□□□□ -1.6
TCF3-220ENST00000611869 KRTAP8-1Q8IUC2 63 aa5.06□□□□□ -1.6
TCF3-220ENST00000611869 FLGP20930 4061 aaPredicted RBP5.06□□□□□ -1.6
TCF3-220ENST00000611869 MT1BP07438 61 aa5.05□□□□□ -1.6
TCF3-220ENST00000611869 KRTAP10-7P60409 375 aaPredicted RBP5.04□□□□□ -1.6
TCF3-220ENST00000611869 INE1O15225 51 aa5.03□□□□□ -1.6
TCF3-220ENST00000611869 MT1XP80297 61 aa5.03□□□□□ -1.6
TCF3-220ENST00000611869 KRTAP19-5Q3LI72 72 aa5.01□□□□□ -1.61
TCF3-220ENST00000611869 RNF213Q63HN8 5207 aa5.01□□□□□ -1.61
TCF3-220ENST00000611869 KRTAP10-5P60370 271 aa4.99□□□□□ -1.61
TCF3-220ENST00000611869 FAT4Q6V0I7 4981 aa4.97□□□□□ -1.61
TCF3-220ENST00000611869 KRTAP9-3Q9BYQ3 159 aa4.96□□□□□ -1.62
TCF3-220ENST00000611869 UBR4Q5T4S7 5183 aa4.93□□□□□ -1.62
TCF3-220ENST00000611869 HMCN2Q8NDA2 5059 aa4.92□□□□□ -1.62
TCF3-220ENST00000611869 LCE3CQ5T5A8 94 aa4.84□□□□□ -1.63
TCF3-220ENST00000611869 KRTAP4-8A0A0G2JLE6 195 aa4.83□□□□□ -1.64
TCF3-220ENST00000611869 KRTAP4-8Q9BYQ9 185 aa4.83□□□□□ -1.64
TCF3-220ENST00000611869 FSIP2Q5CZC0 6907 aa4.82□□□□□ -1.64
TCF3-220ENST00000611869 LCE2BO14633 110 aa4.81□□□□□ -1.64
TCF3-220ENST00000611869 SPRR2FQ96RM1 72 aa4.75□□□□□ -1.65
TCF3-220ENST00000611869 SPRR5A0A1B0GTR4 108 aa4.72□□□□□ -1.65
TCF3-220ENST00000611869 LCE2AQ5TA79 106 aaPredicted RBP4.58□□□□□ -1.68
TCF3-220ENST00000611869 KRTAP19-4Q3LI73 84 aa4.56□□□□□ -1.68
TCF3-220ENST00000611869 KRTAP4-7Q9BYR0 210 aa4.55□□□□□ -1.68
TCF3-220ENST00000611869 MT1GP13640 62 aa4.5□□□□□ -1.69
TCF3-220ENST00000611869 MT1LQ93083 61 aa4.45□□□□□ -1.7
TCF3-220ENST00000611869 MT1EP04732 61 aa4.45□□□□□ -1.7
TCF3-220ENST00000611869 USH2AO75445 5202 aa4.39□□□□□ -1.71
TCF3-220ENST00000611869 KRTAP19-6Q3LI70 58 aa4.39□□□□□ -1.71
TCF3-220ENST00000611869 SPRR2EP22531 72 aa4.37□□□□□ -1.71
TCF3-220ENST00000611869 SPRR2BP35325 72 aa4.37□□□□□ -1.71
TCF3-220ENST00000611869 SPRR2AP35326 72 aa4.37□□□□□ -1.71
TCF3-220ENST00000611869 KRTAP9-2Q9BYQ4 174 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms