RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 MT1HL1P0DM35 61 aa3.8□□□□□ -1.8
CSMD1-216ENST00000602557 ANK2Q01484 3957 aa3.78□□□□□ -1.8
CSMD1-216ENST00000602557 KRTAP12-3P60328 96 aa3.76□□□□□ -1.81
CSMD1-216ENST00000602557 LCE3AQ5TA76 89 aa3.76□□□□□ -1.81
CSMD1-216ENST00000602557 ANK3Q12955 4377 aaKnown RBP3.71□□□□□ -1.81
CSMD1-216ENST00000602557 KRTAP4-5Q9BYR2 181 aa3.71□□□□□ -1.82
CSMD1-216ENST00000602557 KRTAP10-5P60370 271 aa3.7□□□□□ -1.82
CSMD1-216ENST00000602557 KRTAP23-1A1A580 65 aa3.67□□□□□ -1.82
CSMD1-216ENST00000602557 KRTAP10-4P60372 401 aaPredicted RBP3.66□□□□□ -1.82
CSMD1-216ENST00000602557 LORP23490 312 aaPredicted RBP3.65□□□□□ -1.83
CSMD1-216ENST00000602557 DNAH2Q9P225 4427 aa3.64□□□□□ -1.83
CSMD1-216ENST00000602557 DNAH1Q9P2D7 4330 aa3.63□□□□□ -1.83
CSMD1-216ENST00000602557 KMT2AQ03164 3969 aa3.63□□□□□ -1.83
CSMD1-216ENST00000602557 DNAH6Q9C0G6 4158 aa3.61□□□□□ -1.83
CSMD1-216ENST00000602557 VPS13BQ7Z7G8 4022 aa3.59□□□□□ -1.83
CSMD1-216ENST00000602557 HUWE1Q7Z6Z7 4374 aaKnown RBP3.56□□□□□ -1.84
CSMD1-216ENST00000602557 KRTAP8-1Q8IUC2 63 aa3.54□□□□□ -1.84
CSMD1-216ENST00000602557 PRKDCP78527 4128 aaKnown RBP3.48□□□□□ -1.85
CSMD1-216ENST00000602557 FLGP20930 4061 aaPredicted RBP3.48□□□□□ -1.85
CSMD1-216ENST00000602557 FRAS1Q86XX4 4008 aa3.42□□□□□ -1.86
CSMD1-216ENST00000602557 VPS13DQ5THJ4 4388 aa3.41□□□□□ -1.86
CSMD1-216ENST00000602557 KRTAP4-1Q9BYQ7 146 aa3.39□□□□□ -1.87
CSMD1-216ENST00000602557 DNAH10Q8IVF4 4471 aa3.35□□□□□ -1.87
CSMD1-216ENST00000602557 MT1HP80294 61 aa3.34□□□□□ -1.88
CSMD1-216ENST00000602557 KRTAP19-5Q3LI72 72 aa3.32□□□□□ -1.88
CSMD1-216ENST00000602557 MT2AP02795 61 aa3.31□□□□□ -1.88
CSMD1-216ENST00000602557 SPRR2GQ9BYE4 73 aa3.3□□□□□ -1.88
CSMD1-216ENST00000602557 LCE3CQ5T5A8 94 aa3.29□□□□□ -1.88
CSMD1-216ENST00000602557 SPRR2FQ96RM1 72 aa3.29□□□□□ -1.88
CSMD1-216ENST00000602557 PKHD1P08F94 4074 aa3.29□□□□□ -1.88
CSMD1-216ENST00000602557 KRTAP10-7P60409 375 aaPredicted RBP3.28□□□□□ -1.89
CSMD1-216ENST00000602557 DNAH9Q9NYC9 4486 aa3.27□□□□□ -1.89
CSMD1-216ENST00000602557 MT1FP04733 61 aa3.26□□□□□ -1.89
CSMD1-216ENST00000602557 FAT2Q9NYQ8 4349 aa3.25□□□□□ -1.89
CSMD1-216ENST00000602557 DNAH17Q9UFH2 4485 aa3.24□□□□□ -1.89
CSMD1-216ENST00000602557 DNAH11Q96DT5 4516 aa3.23□□□□□ -1.89
CSMD1-216ENST00000602557 DNAH5Q8TE73 4624 aa3.23□□□□□ -1.89
CSMD1-216ENST00000602557 STARD9Q9P2P6 4700 aa3.21□□□□□ -1.9
CSMD1-216ENST00000602557 DNAH8Q96JB1 4490 aa3.18□□□□□ -1.9
CSMD1-216ENST00000602557 KRTAP12-4P60329 112 aa3.18□□□□□ -1.9
CSMD1-216ENST00000602557 DYNC2H1Q8NCM8 4307 aaKnown RBP3.17□□□□□ -1.9
CSMD1-216ENST00000602557 LCE3BQ5TA77 95 aa3.17□□□□□ -1.9
CSMD1-216ENST00000602557 PLECQ15149 4684 aaKnown RBP3.16□□□□□ -1.9
CSMD1-216ENST00000602557 SPRR5A0A1B0GTR4 108 aa3.09□□□□□ -1.91
CSMD1-216ENST00000602557 KRTAP19-4Q3LI73 84 aa3.09□□□□□ -1.91
CSMD1-216ENST00000602557 SPRR2EP22531 72 aa3.05□□□□□ -1.92
CSMD1-216ENST00000602557 SPRR2BP35325 72 aa3.05□□□□□ -1.92
CSMD1-216ENST00000602557 SPRR2AP35326 72 aa3.05□□□□□ -1.92
CSMD1-216ENST00000602557 DNHD1Q96M86 4753 aa3.03□□□□□ -1.92
CSMD1-216ENST00000602557 MT1XP80297 61 aa3.03□□□□□ -1.92
CSMD1-216ENST00000602557 MT1GP13640 62 aa3.02□□□□□ -1.93
CSMD1-216ENST00000602557 PKHD1L1Q86WI1 4243 aa3.02□□□□□ -1.93
CSMD1-216ENST00000602557 KRTAP19-1Q8IUB9 90 aa3.01□□□□□ -1.93
CSMD1-216ENST00000602557 LRP1Q07954 4544 aaKnown RBP3.01□□□□□ -1.93
CSMD1-216ENST00000602557 FAT1Q14517 4588 aa3□□□□□ -1.93
CSMD1-216ENST00000602557 LRP1BQ9NZR2 4599 aa2.99□□□□□ -1.93
CSMD1-216ENST00000602557 KRTAP19-8Q3LI54 63 aa2.99□□□□□ -1.93
CSMD1-216ENST00000602557 SACSQ9NZJ4 4579 aa2.98□□□□□ -1.93
CSMD1-216ENST00000602557 RYR1P21817 5038 aa2.98□□□□□ -1.93
CSMD1-216ENST00000602557 PKD1P98161 4303 aa2.96□□□□□ -1.94
CSMD1-216ENST00000602557 DYNC1H1Q14204 4646 aaKnown RBP2.96□□□□□ -1.94
CSMD1-216ENST00000602557 SPRR2DP22532 72 aa2.96□□□□□ -1.94
CSMD1-216ENST00000602557 MYCBP2O75592 4640 aa2.95□□□□□ -1.94
CSMD1-216ENST00000602557 HSPG2P98160 4391 aa2.94□□□□□ -1.94
CSMD1-216ENST00000602557 LCE2BO14633 110 aa2.94□□□□□ -1.94
CSMD1-216ENST00000602557 TNXBP22105 4242 aa2.92□□□□□ -1.94
CSMD1-216ENST00000602557 KRTAP17-1Q9BYP8 105 aa2.91□□□□□ -1.94
CSMD1-216ENST00000602557 APOBP04114 4563 aaKnown RBP2.9□□□□□ -1.94
CSMD1-216ENST00000602557 LCE3DQ9BYE3 92 aa2.9□□□□□ -1.94
CSMD1-216ENST00000602557 KRTAP4-8A0A0G2JLE6 195 aa2.9□□□□□ -1.94
CSMD1-216ENST00000602557 KRTAP4-8Q9BYQ9 185 aa2.9□□□□□ -1.94
CSMD1-216ENST00000602557 MT1BP07438 61 aa2.89□□□□□ -1.95
CSMD1-216ENST00000602557 RYR3Q15413 4870 aa2.89□□□□□ -1.95
CSMD1-216ENST00000602557 PRM1P04553 51 aa2.89□□□□□ -1.95
CSMD1-216ENST00000602557 LCE3EQ5T5B0 92 aa2.87□□□□□ -1.95
CSMD1-216ENST00000602557 KRTAP9-8Q9BYQ0 159 aa2.85□□□□□ -1.95
CSMD1-216ENST00000602557 FAT3Q8TDW7 4589 aa2.83□□□□□ -1.96
CSMD1-216ENST00000602557 KRTAP4-7Q9BYR0 210 aa2.83□□□□□ -1.96
CSMD1-216ENST00000602557 PCLOQ9Y6V0 5065 aa2.83□□□□□ -1.96
CSMD1-216ENST00000602557 KRTAP9-3Q9BYQ3 159 aa2.81□□□□□ -1.96
CSMD1-216ENST00000602557 MT1LQ93083 61 aa2.76□□□□□ -1.97
CSMD1-216ENST00000602557 KRTAP19-3Q7Z4W3 81 aa2.76□□□□□ -1.97
CSMD1-216ENST00000602557 LCE2CQ5TA81 110 aa2.76□□□□□ -1.97
CSMD1-216ENST00000602557 LRP2P98164 4655 aa2.73□□□□□ -1.97
CSMD1-216ENST00000602557 MT1EP04732 61 aa2.71□□□□□ -1.97
CSMD1-216ENST00000602557 LOC100996750A0A140TA64 210 aa2.71□□□□□ -1.98
CSMD1-216ENST00000602557 LCE2DQ5TA82 110 aaPredicted RBP2.69□□□□□ -1.98
CSMD1-216ENST00000602557 MT4P47944 62 aa2.69□□□□□ -1.98
CSMD1-216ENST00000602557 MT1MQ8N339 61 aa2.66□□□□□ -1.98
CSMD1-216ENST00000602557 KRTAP4-9Q9BYQ8 210 aa2.65□□□□□ -1.99
CSMD1-216ENST00000602557 KRTAP4-3Q9BYR4 195 aa2.61□□□□□ -1.99
CSMD1-216ENST00000602557 LPAP08519 4548 aa2.61□□□□□ -1.99
CSMD1-216ENST00000602557 KMT2CQ8NEZ4 4911 aaKnown RBP2.6□□□□□ -1.99
CSMD1-216ENST00000602557 LCE1DQ5T752 114 aa2.6□□□□□ -1.99
CSMD1-216ENST00000602557 MT3P25713 68 aa2.6□□□□□ -1.99
CSMD1-216ENST00000602557 KRTAP19-2Q3LHN2 52 aa2.6□□□□□ -1.99
CSMD1-216ENST00000602557 LCE1BQ5T7P3 118 aa2.6□□□□□ -1.99
CSMD1-216ENST00000602557 KIAA1109Q2LD37 5005 aa2.59□□□□□ -1.99
CSMD1-216ENST00000602557 MUC17Q685J3 4493 aa2.58□□□□□ -2
CSMD1-216ENST00000602557 KRTAP2-3P0C7H8 128 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms