RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 KRTAP9-8Q9BYQ0 159 aa9.6□□□□□ -0.87
SHKBP1-222ENST00000600320 CRCT1Q9UGL9 99 aa9.6□□□□□ -0.87
SHKBP1-222ENST00000600320 DMAC1Q96GE9 116 aa9.57□□□□□ -0.88
SHKBP1-222ENST00000600320 KRTAP3-3Q9BYR6 98 aa9.55□□□□□ -0.88
SHKBP1-222ENST00000600320 MT2AP02795 61 aa9.52□□□□□ -0.89
SHKBP1-222ENST00000600320 CYSTM1Q9H1C7 97 aa9.5□□□□□ -0.89
SHKBP1-222ENST00000600320 CSAG1Q6PB30 78 aa9.47□□□□□ -0.89
SHKBP1-222ENST00000600320 MT1FP04733 61 aa9.46□□□□□ -0.9
SHKBP1-222ENST00000600320 SPANXA2-OT1Q8N9U9 137 aa9.46□□□□□ -0.9
SHKBP1-222ENST00000600320 CCDC179H3BU77 68 aa9.44□□□□□ -0.9
SHKBP1-222ENST00000600320 H7BZZ5 65 aa9.41□□□□□ -0.9
SHKBP1-222ENST00000600320 NDUFC1O43677 76 aa9.41□□□□□ -0.9
SHKBP1-222ENST00000600320 ACYP2P14621 99 aa9.4□□□□□ -0.9
SHKBP1-222ENST00000600320 KRTAP10-10P60014 251 aa9.37□□□□□ -0.91
SHKBP1-222ENST00000600320 KRTAP9-3Q9BYQ3 159 aa9.27□□□□□ -0.93
SHKBP1-222ENST00000600320 CHKB-CPT1BH3BT56 60 aa9.23□□□□□ -0.93
SHKBP1-222ENST00000600320 COA5Q86WW8 74 aa9.2□□□□□ -0.94
SHKBP1-222ENST00000600320 H0YAA0 97 aa9.19□□□□□ -0.94
SHKBP1-222ENST00000600320 ADM2Q7Z4H4 148 aa9.15□□□□□ -0.94
SHKBP1-222ENST00000600320 SPTSSBQ8NFR3 76 aa9.14□□□□□ -0.95
SHKBP1-222ENST00000600320 LCE2BO14633 110 aa9.13□□□□□ -0.95
SHKBP1-222ENST00000600320 KRTAP3-2Q9BYR7 98 aa9.07□□□□□ -0.96
SHKBP1-222ENST00000600320 ATP5EP56381 51 aaPredicted RBP9.06□□□□□ -0.96
SHKBP1-222ENST00000600320 KRTAP19-1Q8IUB9 90 aa9.06□□□□□ -0.96
SHKBP1-222ENST00000600320 P0C880 135 aa9.05□□□□□ -0.96
SHKBP1-222ENST00000600320 TMEM258P61165 79 aa9.05□□□□□ -0.96
SHKBP1-222ENST00000600320 SPRR2GQ9BYE4 73 aa9□□□□□ -0.97
SHKBP1-222ENST00000600320 CRIPTQ9P021 101 aa8.98□□□□□ -0.97
SHKBP1-222ENST00000600320 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.96□□□□□ -0.98
SHKBP1-222ENST00000600320 PCP4P48539 62 aa8.96□□□□□ -0.98
SHKBP1-222ENST00000600320 USH2AO75445 5202 aa8.95□□□□□ -0.98
SHKBP1-222ENST00000600320 KRTAP9-7A8MTY7 169 aa8.94□□□□□ -0.98
SHKBP1-222ENST00000600320 SSPOA2VEC9 5147 aa8.93□□□□□ -0.98
SHKBP1-222ENST00000600320 KRTAP19-8Q3LI54 63 aa8.88□□□□□ -0.99
SHKBP1-222ENST00000600320 MT1BP07438 61 aa8.83□□□□□ -1
SHKBP1-222ENST00000600320 M0QZ58 72 aa8.82□□□□□ -1
SHKBP1-222ENST00000600320 R4GN34 69 aa8.82□□□□□ -1
SHKBP1-222ENST00000600320 Q5VV11 94 aa8.79□□□□□ -1
SHKBP1-222ENST00000600320 SERP1Q9Y6X1 66 aa8.78□□□□□ -1
SHKBP1-222ENST00000600320 FCGBPQ9Y6R7 5405 aaPredicted RBP8.76□□□□□ -1.01
SHKBP1-222ENST00000600320 SEC61GP60059 68 aa8.74□□□□□ -1.01
SHKBP1-222ENST00000600320 KRTAP13-4Q3LI77 160 aa8.69□□□□□ -1.02
SHKBP1-222ENST00000600320 A0A1B0GU69 56 aa8.68□□□□□ -1.02
SHKBP1-222ENST00000600320 KRTAP19-6Q3LI70 58 aa8.68□□□□□ -1.02
SHKBP1-222ENST00000600320 LINC01554Q52M75 96 aa8.66□□□□□ -1.02
SHKBP1-222ENST00000600320 MACF1Q9UPN3 7388 aaKnown RBP8.66□□□□□ -1.02
SHKBP1-222ENST00000600320 LINC01558Q9Y6Z2 57 aa8.65□□□□□ -1.02
SHKBP1-222ENST00000600320 A0A1B0GU33 70 aa8.6□□□□□ -1.03
SHKBP1-222ENST00000600320 SYNE2Q8WXH0 6885 aaKnown RBP8.6□□□□□ -1.03
SHKBP1-222ENST00000600320 SPATA8Q6RVD6 105 aa8.54□□□□□ -1.04
SHKBP1-222ENST00000600320 PLAC4Q8WY50 150 aa8.53□□□□□ -1.04
SHKBP1-222ENST00000600320 PRR15LQ9BU68 103 aa8.53□□□□□ -1.04
SHKBP1-222ENST00000600320 KRTAP10-5P60370 271 aa8.48□□□□□ -1.05
SHKBP1-222ENST00000600320 RPS28P62857 69 aaKnown RBP8.47□□□□□ -1.05
SHKBP1-222ENST00000600320 A6NN06 94 aa8.46□□□□□ -1.06
SHKBP1-222ENST00000600320 SMIM26A0A096LP01 95 aa8.45□□□□□ -1.06
SHKBP1-222ENST00000600320 A0A0D9SG42 100 aa8.44□□□□□ -1.06
SHKBP1-222ENST00000600320 Q1T7F1 81 aa8.43□□□□□ -1.06
SHKBP1-222ENST00000600320 V9GYY9 64 aa8.41□□□□□ -1.06
SHKBP1-222ENST00000600320 MT1XP80297 61 aa8.4□□□□□ -1.06
SHKBP1-222ENST00000600320 A8MU10 97 aa8.36□□□□□ -1.07
SHKBP1-222ENST00000600320 PSPHP1O15172 72 aa8.35□□□□□ -1.07
SHKBP1-222ENST00000600320 KRTAP12-1P59990 96 aa8.3□□□□□ -1.08
SHKBP1-222ENST00000600320 KRTAP6-3Q3LI67 103 aa8.29□□□□□ -1.08
SHKBP1-222ENST00000600320 PRO2289Q9P1D8 64 aa8.29□□□□□ -1.08
SHKBP1-222ENST00000600320 UQCR11O14957 56 aa8.28□□□□□ -1.08
SHKBP1-222ENST00000600320 SPINT4Q6UDR6 99 aa8.27□□□□□ -1.09
SHKBP1-222ENST00000600320 KRTAP12-2P59991 146 aa8.25□□□□□ -1.09
SHKBP1-222ENST00000600320 CAMK2N1Q7Z7J9 78 aa8.2□□□□□ -1.1
SHKBP1-222ENST00000600320 MIR22HGQ0VDD5 57 aa8.18□□□□□ -1.1
SHKBP1-222ENST00000600320 NEBP20929 6669 aa8.11□□□□□ -1.11
SHKBP1-222ENST00000600320 A6NED7 52 aa8.07□□□□□ -1.12
SHKBP1-222ENST00000600320 KRTAP10-7P60409 375 aaPredicted RBP8.04□□□□□ -1.12
SHKBP1-222ENST00000600320 KRTAP10-12P60413 245 aa7.96□□□□□ -1.14
SHKBP1-222ENST00000600320 MUC12Q9UKN1 5478 aa7.95□□□□□ -1.14
SHKBP1-222ENST00000600320 C10orf95Q9H7T3 257 aa7.91□□□□□ -1.14
SHKBP1-222ENST00000600320 KRTAP4-8A0A0G2JLE6 195 aa7.89□□□□□ -1.15
SHKBP1-222ENST00000600320 KRTAP4-8Q9BYQ9 185 aa7.89□□□□□ -1.15
SHKBP1-222ENST00000600320 K7ERS5 55 aa7.85□□□□□ -1.15
SHKBP1-222ENST00000600320 CDC42SE1Q9NRR8 79 aa7.83□□□□□ -1.16
SHKBP1-222ENST00000600320 KMT2DO14686 5537 aa7.8□□□□□ -1.16
SHKBP1-222ENST00000600320 KRTAP20-1Q3LI63 56 aa7.8□□□□□ -1.16
SHKBP1-222ENST00000600320 KRTAP5-9P26371 169 aa7.79□□□□□ -1.16
SHKBP1-222ENST00000600320 KRTAP8-1Q8IUC2 63 aa7.78□□□□□ -1.16
SHKBP1-222ENST00000600320 TNP1P09430 55 aa7.71□□□□□ -1.18
SHKBP1-222ENST00000600320 MDN1Q9NU22 5596 aa7.67□□□□□ -1.18
SHKBP1-222ENST00000600320 SPRR2FQ96RM1 72 aa7.64□□□□□ -1.19
SHKBP1-222ENST00000600320 LCE3AQ5TA76 89 aa7.55□□□□□ -1.2
SHKBP1-222ENST00000600320 BRK1Q8WUW1 75 aa7.55□□□□□ -1.2
SHKBP1-222ENST00000600320 KRTAP2-3P0C7H8 128 aa7.53□□□□□ -1.2
SHKBP1-222ENST00000600320 KRTAP25-1Q3LHN0 102 aa7.53□□□□□ -1.2
SHKBP1-222ENST00000600320 KRTAP2-4Q9BYR9 128 aa7.53□□□□□ -1.2
SHKBP1-222ENST00000600320 KRTAP19-7Q3SYF9 63 aa7.51□□□□□ -1.21
SHKBP1-222ENST00000600320 ROMO1P60602 79 aa7.48□□□□□ -1.21
SHKBP1-222ENST00000600320 KRTAP19-5Q3LI72 72 aa7.45□□□□□ -1.22
SHKBP1-222ENST00000600320 SPRR2EP22531 72 aa7.44□□□□□ -1.22
SHKBP1-222ENST00000600320 SPRR2BP35325 72 aa7.44□□□□□ -1.22
SHKBP1-222ENST00000600320 SPRR2AP35326 72 aa7.44□□□□□ -1.22
SHKBP1-222ENST00000600320 MT1EP04732 61 aa7.41□□□□□ -1.22
SHKBP1-222ENST00000600320 LCE1AQ5T7P2 110 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms