RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 SPATA8Q6RVD6 105 aa10.16□□□□□ -0.78
CLIP3-206ENST00000593074 J3QL48 77 aa10.11□□□□□ -0.79
CLIP3-206ENST00000593074 MIR22HGQ0VDD5 57 aa10.11□□□□□ -0.79
CLIP3-206ENST00000593074 A6NN06 94 aa10.1□□□□□ -0.79
CLIP3-206ENST00000593074 ABCA13Q86UQ4 5058 aa10.02□□□□□ -0.81
CLIP3-206ENST00000593074 BIRC6Q9NR09 4857 aa10□□□□□ -0.81
CLIP3-206ENST00000593074 KRTAP3-3Q9BYR6 98 aa10□□□□□ -0.81
CLIP3-206ENST00000593074 LRP2P98164 4655 aa9.98□□□□□ -0.81
CLIP3-206ENST00000593074 HERC2O95714 4834 aa9.97□□□□□ -0.81
CLIP3-206ENST00000593074 S4R3F8 94 aa9.95□□□□□ -0.82
CLIP3-206ENST00000593074 KTN1-AS1Q86SY8 53 aa9.94□□□□□ -0.82
CLIP3-206ENST00000593074 LPAP08519 4548 aa9.93□□□□□ -0.82
CLIP3-206ENST00000593074 A0A1B0GU33 70 aa9.93□□□□□ -0.82
CLIP3-206ENST00000593074 H1FX-AS1Q4G0G2 97 aa9.92□□□□□ -0.82
CLIP3-206ENST00000593074 H0YAA0 97 aa9.92□□□□□ -0.82
CLIP3-206ENST00000593074 SEC61BP60468 96 aaKnown RBP9.87□□□□□ -0.83
CLIP3-206ENST00000593074 RBM12B-AS1Q9P1G2 102 aa9.84□□□□□ -0.83
CLIP3-206ENST00000593074 KRTAP10-6P60371 365 aaPredicted RBP9.8□□□□□ -0.84
CLIP3-206ENST00000593074 KRTAP3-2Q9BYR7 98 aa9.77□□□□□ -0.85
CLIP3-206ENST00000593074 CSAG1Q6PB30 78 aa9.64□□□□□ -0.87
CLIP3-206ENST00000593074 KRTAP4-1Q9BYQ7 146 aa9.64□□□□□ -0.87
CLIP3-206ENST00000593074 P0C880 135 aa9.63□□□□□ -0.87
CLIP3-206ENST00000593074 MUC17Q685J3 4493 aa9.62□□□□□ -0.87
CLIP3-206ENST00000593074 KRTAP13-4Q3LI77 160 aa9.62□□□□□ -0.87
CLIP3-206ENST00000593074 PCLOQ9Y6V0 5065 aa9.59□□□□□ -0.87
CLIP3-206ENST00000593074 ADM2Q7Z4H4 148 aa9.58□□□□□ -0.88
CLIP3-206ENST00000593074 PRAC1Q96KF2 57 aa9.53□□□□□ -0.88
CLIP3-206ENST00000593074 K7ERS5 55 aa9.51□□□□□ -0.89
CLIP3-206ENST00000593074 A0A0D9SG42 100 aa9.45□□□□□ -0.9
CLIP3-206ENST00000593074 KRTAP19-2Q3LHN2 52 aa9.44□□□□□ -0.9
CLIP3-206ENST00000593074 HERC1Q15751 4861 aa9.42□□□□□ -0.9
CLIP3-206ENST00000593074 M0QZ58 72 aa9.38□□□□□ -0.91
CLIP3-206ENST00000593074 HMCN2Q8NDA2 5059 aa9.37□□□□□ -0.91
CLIP3-206ENST00000593074 KRTAP12-2P59991 146 aa9.28□□□□□ -0.92
CLIP3-206ENST00000593074 KRTAP12-1P59990 96 aa9.26□□□□□ -0.93
CLIP3-206ENST00000593074 ROMO1P60602 79 aa9.25□□□□□ -0.93
CLIP3-206ENST00000593074 MUC2Q02817 5179 aa9.2□□□□□ -0.94
CLIP3-206ENST00000593074 R4GN34 69 aa9.19□□□□□ -0.94
CLIP3-206ENST00000593074 KRTAP25-1Q3LHN0 102 aa9.17□□□□□ -0.94
CLIP3-206ENST00000593074 FLGP20930 4061 aaPredicted RBP9.17□□□□□ -0.94
CLIP3-206ENST00000593074 SPINT4Q6UDR6 99 aa9.16□□□□□ -0.94
CLIP3-206ENST00000593074 LORP23490 312 aaPredicted RBP9.13□□□□□ -0.95
CLIP3-206ENST00000593074 LINC01554Q52M75 96 aa9.12□□□□□ -0.95
CLIP3-206ENST00000593074 LCE2CQ5TA81 110 aa9.07□□□□□ -0.96
CLIP3-206ENST00000593074 CRIPTQ9P021 101 aa9.04□□□□□ -0.96
CLIP3-206ENST00000593074 UBR4Q5T4S7 5183 aa8.89□□□□□ -0.99
CLIP3-206ENST00000593074 RNF213Q63HN8 5207 aa8.89□□□□□ -0.99
CLIP3-206ENST00000593074 M0R2T5 61 aa8.86□□□□□ -0.99
CLIP3-206ENST00000593074 MT1HP80294 61 aa8.86□□□□□ -0.99
CLIP3-206ENST00000593074 C10orf95Q9H7T3 257 aa8.83□□□□□ -1
CLIP3-206ENST00000593074 FAT4Q6V0I7 4981 aa8.82□□□□□ -1
CLIP3-206ENST00000593074 CAMK2N1Q7Z7J9 78 aa8.66□□□□□ -1.02
CLIP3-206ENST00000593074 SPRR2GQ9BYE4 73 aa8.63□□□□□ -1.03
CLIP3-206ENST00000593074 MT2AP02795 61 aa8.6□□□□□ -1.03
CLIP3-206ENST00000593074 KRTAP9-8Q9BYQ0 159 aa8.59□□□□□ -1.03
CLIP3-206ENST00000593074 KRTAP10-10P60014 251 aa8.58□□□□□ -1.04
CLIP3-206ENST00000593074 KRTAP19-1Q8IUB9 90 aa8.57□□□□□ -1.04
CLIP3-206ENST00000593074 H3BS24 57 aa8.56□□□□□ -1.04
CLIP3-206ENST00000593074 MT1FP04733 61 aa8.56□□□□□ -1.04
CLIP3-206ENST00000593074 PLAC4Q8WY50 150 aa8.43□□□□□ -1.06
CLIP3-206ENST00000593074 PP632Q6XCG6 107 aa8.36□□□□□ -1.07
CLIP3-206ENST00000593074 TNP1P09430 55 aa8.33□□□□□ -1.08
CLIP3-206ENST00000593074 KRTAP19-8Q3LI54 63 aa8.31□□□□□ -1.08
CLIP3-206ENST00000593074 KRTAP15-1Q3LI76 137 aa8.27□□□□□ -1.09
CLIP3-206ENST00000593074 KRTAP9-3Q9BYQ3 159 aa8.26□□□□□ -1.09
CLIP3-206ENST00000593074 LCE2AQ5TA79 106 aaPredicted RBP8.24□□□□□ -1.09
CLIP3-206ENST00000593074 KRTAP23-1A1A580 65 aa8.23□□□□□ -1.09
CLIP3-206ENST00000593074 MT1BP07438 61 aa8.18□□□□□ -1.1
CLIP3-206ENST00000593074 KRTAP10-5P60370 271 aa8.04□□□□□ -1.12
CLIP3-206ENST00000593074 MT1XP80297 61 aa8.04□□□□□ -1.12
CLIP3-206ENST00000593074 LCE2BO14633 110 aa7.98□□□□□ -1.13
CLIP3-206ENST00000593074 LCE3AQ5TA76 89 aa7.92□□□□□ -1.14
CLIP3-206ENST00000593074 PRO2289Q9P1D8 64 aa7.87□□□□□ -1.15
CLIP3-206ENST00000593074 NDUFAF8A1L188 74 aa7.85□□□□□ -1.15
CLIP3-206ENST00000593074 KRTAP8-1Q8IUC2 63 aa7.78□□□□□ -1.16
CLIP3-206ENST00000593074 KRTAP10-12P60413 245 aa7.77□□□□□ -1.17
CLIP3-206ENST00000593074 KRTAP10-7P60409 375 aaPredicted RBP7.74□□□□□ -1.17
CLIP3-206ENST00000593074 SPRR5A0A1B0GTR4 108 aa7.68□□□□□ -1.18
CLIP3-206ENST00000593074 USH2AO75445 5202 aa7.6□□□□□ -1.19
CLIP3-206ENST00000593074 LUZP6Q538Z0 58 aa7.6□□□□□ -1.19
CLIP3-206ENST00000593074 KRTAP12-3P60328 96 aa7.58□□□□□ -1.2
CLIP3-206ENST00000593074 KRTAP19-6Q3LI70 58 aa7.38□□□□□ -1.23
CLIP3-206ENST00000593074 KRTAP19-5Q3LI72 72 aa7.37□□□□□ -1.23
CLIP3-206ENST00000593074 LCE2DQ5TA82 110 aaPredicted RBP7.35□□□□□ -1.23
CLIP3-206ENST00000593074 KRTAP4-8A0A0G2JLE6 195 aa7.34□□□□□ -1.23
CLIP3-206ENST00000593074 KRTAP4-8Q9BYQ9 185 aa7.34□□□□□ -1.23
CLIP3-206ENST00000593074 SSPOA2VEC9 5147 aa7.33□□□□□ -1.24
CLIP3-206ENST00000593074 A0A0A0MQY5 61 aa7.29□□□□□ -1.24
CLIP3-206ENST00000593074 KMT2DO14686 5537 aa7.26□□□□□ -1.25
CLIP3-206ENST00000593074 FSIP2Q5CZC0 6907 aa7.26□□□□□ -1.25
CLIP3-206ENST00000593074 KRTAP9-2Q9BYQ4 174 aa7.18□□□□□ -1.26
CLIP3-206ENST00000593074 KRTAP19-7Q3SYF9 63 aa7.16□□□□□ -1.26
CLIP3-206ENST00000593074 LCE3CQ5T5A8 94 aa7.12□□□□□ -1.27
CLIP3-206ENST00000593074 MT1EP04732 61 aa6.99□□□□□ -1.29
CLIP3-206ENST00000593074 KRTAP19-4Q3LI73 84 aa6.96□□□□□ -1.3
CLIP3-206ENST00000593074 FCGBPQ9Y6R7 5405 aaPredicted RBP6.94□□□□□ -1.3
CLIP3-206ENST00000593074 MT1LQ93083 61 aa6.93□□□□□ -1.3
CLIP3-206ENST00000593074 KRTAP9-6A0A140TA67 174 aa6.92□□□□□ -1.3
CLIP3-206ENST00000593074 KRTAP4-7Q9BYR0 210 aa6.82□□□□□ -1.32
CLIP3-206ENST00000593074 KRTAP9-6A8MVA2 160 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms