RNA–Protein interactions for RNA: ENST00000585448.1

SMAD4-203, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-203ENST00000585448 USP9YO00507 2555 aaPredicted RBP2.64□□□□□ -1.99
SMAD4-203ENST00000585448 HIVEP1P15822 2718 aa2.64□□□□□ -1.99
SMAD4-203ENST00000585448 DNAH8Q96JB1 4490 aa2.63□□□□□ -1.99
SMAD4-203ENST00000585448 LRRK2Q5S007 2527 aa2.62□□□□□ -1.99
SMAD4-203ENST00000585448 LCE3DQ9BYE3 92 aa2.62□□□□□ -1.99
SMAD4-203ENST00000585448 EYSQ5T1H1 3165 aa2.62□□□□□ -1.99
SMAD4-203ENST00000585448 KRTAP5-2Q701N4 177 aa2.6□□□□□ -1.99
SMAD4-203ENST00000585448 ACACBO00763 2458 aa2.6□□□□□ -1.99
SMAD4-203ENST00000585448 STAB2Q8WWQ8 2551 aa2.59□□□□□ -1.99
SMAD4-203ENST00000585448 CFAP46Q8IYW2 2715 aa2.59□□□□□ -1.99
SMAD4-203ENST00000585448 PDZD2O15018 2839 aa2.59□□□□□ -1.99
SMAD4-203ENST00000585448 VPS13CQ709C8 3753 aa2.59□□□□□ -1.99
SMAD4-203ENST00000585448 ABCA12Q86UK0 2595 aa2.59□□□□□ -1.99
SMAD4-203ENST00000585448 SETD2Q9BYW2 2564 aaPredicted RBP2.59□□□□□ -1.99
SMAD4-203ENST00000585448 FRAS1Q86XX4 4008 aa2.58□□□□□ -2
SMAD4-203ENST00000585448 FASNP49327 2511 aaKnown RBP2.58□□□□□ -2
SMAD4-203ENST00000585448 LCE1CQ5T751 118 aa2.57□□□□□ -2
SMAD4-203ENST00000585448 LCE1BQ5T7P3 118 aa2.57□□□□□ -2
SMAD4-203ENST00000585448 FBN2P35556 2912 aa2.56□□□□□ -2
SMAD4-203ENST00000585448 TRRAPQ9Y4A5 3859 aa2.55□□□□□ -2
SMAD4-203ENST00000585448 DNAH11Q96DT5 4516 aa2.55□□□□□ -2
SMAD4-203ENST00000585448 NBEAL1Q6ZS30 2694 aa2.54□□□□□ -2
SMAD4-203ENST00000585448 DNAH17Q9UFH2 4485 aa2.54□□□□□ -2
SMAD4-203ENST00000585448 CACNA1AO00555 2505 aa2.53□□□□□ -2
SMAD4-203ENST00000585448 COL7A1Q02388 2944 aa2.53□□□□□ -2
SMAD4-203ENST00000585448 KRTAP10-10P60014 251 aa2.53□□□□□ -2
SMAD4-203ENST00000585448 KRTAP10-1P60331 282 aa2.53□□□□□ -2
SMAD4-203ENST00000585448 MUC3AQ02505 3323 aa2.53□□□□□ -2
SMAD4-203ENST00000585448 DYNC2H1Q8NCM8 4307 aaKnown RBP2.53□□□□□ -2
SMAD4-203ENST00000585448 DNAH10Q8IVF4 4471 aa2.52□□□□□ -2.01
SMAD4-203ENST00000585448 MYO18BQ8IUG5 2567 aa2.52□□□□□ -2.01
SMAD4-203ENST00000585448 DNAH9Q9NYC9 4486 aa2.52□□□□□ -2.01
SMAD4-203ENST00000585448 ZANQ9Y493 2812 aa2.52□□□□□ -2.01
SMAD4-203ENST00000585448 CSMD2Q7Z408 3487 aa2.51□□□□□ -2.01
SMAD4-203ENST00000585448 MYCBP2O75592 4640 aa2.51□□□□□ -2.01
SMAD4-203ENST00000585448 ANK2Q01484 3957 aa2.51□□□□□ -2.01
SMAD4-203ENST00000585448 CSMD3Q7Z407 3707 aa2.5□□□□□ -2.01
SMAD4-203ENST00000585448 CUBNO60494 3623 aa2.5□□□□□ -2.01
SMAD4-203ENST00000585448 DNAH3Q8TD57 4116 aa2.49□□□□□ -2.01
SMAD4-203ENST00000585448 ITPR3Q14573 2671 aa2.49□□□□□ -2.01
SMAD4-203ENST00000585448 TENM3Q9P273 2699 aa2.49□□□□□ -2.01
SMAD4-203ENST00000585448 CMYA5Q8N3K9 4069 aa2.48□□□□□ -2.01
SMAD4-203ENST00000585448 BDP1A6H8Y1 2624 aa2.48□□□□□ -2.01
SMAD4-203ENST00000585448 ITPR2Q14571 2701 aa2.48□□□□□ -2.01
SMAD4-203ENST00000585448 PKD1L1Q8TDX9 2849 aa2.47□□□□□ -2.01
SMAD4-203ENST00000585448 ZNF292O60281 2723 aa2.47□□□□□ -2.01
SMAD4-203ENST00000585448 POLQO75417 2590 aa2.46□□□□□ -2.02
SMAD4-203ENST00000585448 HUWE1Q7Z6Z7 4374 aaKnown RBP2.45□□□□□ -2.02
SMAD4-203ENST00000585448 FBN3Q75N90 2809 aa2.45□□□□□ -2.02
SMAD4-203ENST00000585448 LYSTQ99698 3801 aa2.45□□□□□ -2.02
SMAD4-203ENST00000585448 DNAH2Q9P225 4427 aa2.44□□□□□ -2.02
SMAD4-203ENST00000585448 ATRQ13535 2644 aa2.44□□□□□ -2.02
SMAD4-203ENST00000585448 DNAH6Q9C0G6 4158 aa2.44□□□□□ -2.02
SMAD4-203ENST00000585448 PRKDCP78527 4128 aaKnown RBP2.43□□□□□ -2.02
SMAD4-203ENST00000585448 MAST4O15021 2626 aa2.42□□□□□ -2.02
SMAD4-203ENST00000585448 FLNAP21333 2647 aaKnown RBP2.41□□□□□ -2.02
SMAD4-203ENST00000585448 SACSQ9NZJ4 4579 aa2.41□□□□□ -2.02
SMAD4-203ENST00000585448 NOTCH1P46531 2555 aa2.4□□□□□ -2.02
SMAD4-203ENST00000585448 TEP1Q99973 2627 aaKnown RBP2.39□□□□□ -2.03
SMAD4-203ENST00000585448 DNAH7Q8WXX0 4024 aa2.39□□□□□ -2.03
SMAD4-203ENST00000585448 FLNBO75369 2602 aaKnown RBP2.36□□□□□ -2.03
SMAD4-203ENST00000585448 KRTAP8-1Q8IUC2 63 aa2.36□□□□□ -2.03
SMAD4-203ENST00000585448 NSD1Q96L73 2696 aaPredicted RBP2.36□□□□□ -2.03
SMAD4-203ENST00000585448 USP24Q9UPU5 2620 aa2.36□□□□□ -2.03
SMAD4-203ENST00000585448 APOBP04114 4563 aaKnown RBP2.34□□□□□ -2.04
SMAD4-203ENST00000585448 STAB1Q9NY15 2570 aa2.33□□□□□ -2.04
SMAD4-203ENST00000585448 KRTAP10-4P60372 401 aaPredicted RBP2.32□□□□□ -2.04
SMAD4-203ENST00000585448 MGAM2Q2M2H8 2515 aa2.31□□□□□ -2.04
SMAD4-203ENST00000585448 J3QKU1 62 aa2.31□□□□□ -2.04
SMAD4-203ENST00000585448 HECTD4Q9Y4D8 3996 aa2.3□□□□□ -2.04
SMAD4-203ENST00000585448 KMT2AQ03164 3969 aa2.3□□□□□ -2.04
SMAD4-203ENST00000585448 IGSF10Q6WRI0 2623 aa2.3□□□□□ -2.04
SMAD4-203ENST00000585448 LRP1Q07954 4544 aaKnown RBP2.29□□□□□ -2.04
SMAD4-203ENST00000585448 PKHD1L1Q86WI1 4243 aa2.26□□□□□ -2.05
SMAD4-203ENST00000585448 SMR3BP02814 79 aaPredicted RBP2.26□□□□□ -2.05
SMAD4-203ENST00000585448 FLNCQ14315 2725 aa2.26□□□□□ -2.05
SMAD4-203ENST00000585448 TENM1Q9UKZ4 2725 aa2.25□□□□□ -2.05
SMAD4-203ENST00000585448 STARD9Q9P2P6 4700 aa2.25□□□□□ -2.05
SMAD4-203ENST00000585448 KRTAP5-8O75690 187 aa2.25□□□□□ -2.05
SMAD4-203ENST00000585448 PKD1P98161 4303 aa2.24□□□□□ -2.05
SMAD4-203ENST00000585448 KRTAP12-3P60328 96 aa2.24□□□□□ -2.05
SMAD4-203ENST00000585448 LRP1BQ9NZR2 4599 aa2.23□□□□□ -2.05
SMAD4-203ENST00000585448 KRTAP2-3P0C7H8 128 aa2.23□□□□□ -2.05
SMAD4-203ENST00000585448 KRTAP2-4Q9BYR9 128 aa2.23□□□□□ -2.05
SMAD4-203ENST00000585448 KRTAP2-1Q9BYU5 128 aa2.23□□□□□ -2.05
SMAD4-203ENST00000585448 ZNF469Q96JG9 3925 aaPredicted RBP2.21□□□□□ -2.06
SMAD4-203ENST00000585448 PLECQ15149 4684 aaKnown RBP2.21□□□□□ -2.06
SMAD4-203ENST00000585448 DYNC1H1Q14204 4646 aaKnown RBP2.21□□□□□ -2.06
SMAD4-203ENST00000585448 M0R2T5 61 aa2.2□□□□□ -2.06
SMAD4-203ENST00000585448 HSPG2P98160 4391 aa2.2□□□□□ -2.06
SMAD4-203ENST00000585448 DNAH5Q8TE73 4624 aa2.19□□□□□ -2.06
SMAD4-203ENST00000585448 PKHD1P08F94 4074 aa2.18□□□□□ -2.06
SMAD4-203ENST00000585448 FAT2Q9NYQ8 4349 aa2.18□□□□□ -2.06
SMAD4-203ENST00000585448 TNXBP22105 4242 aa2.16□□□□□ -2.06
SMAD4-203ENST00000585448 FAT3Q8TDW7 4589 aa2.16□□□□□ -2.06
SMAD4-203ENST00000585448 FLGP20930 4061 aaPredicted RBP2.15□□□□□ -2.07
SMAD4-203ENST00000585448 KRTAP5-7Q6L8G8 165 aa2.14□□□□□ -2.07
SMAD4-203ENST00000585448 SPRR2GQ9BYE4 73 aa2.14□□□□□ -2.07
SMAD4-203ENST00000585448 VPS13BQ7Z7G8 4022 aa2.12□□□□□ -2.07
SMAD4-203ENST00000585448 FAT1Q14517 4588 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms