RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 KRTAP1-4P0C5Y4 121 aa5.28□□□□□ -1.56
CCDC40-212ENST00000574799 NDUFAF8A1L188 74 aa5.27□□□□□ -1.57
CCDC40-212ENST00000574799 FAT3Q8TDW7 4589 aa5.27□□□□□ -1.57
CCDC40-212ENST00000574799 A0A1B0GVY2 172 aa5.26□□□□□ -1.57
CCDC40-212ENST00000574799 KRTAP10-4P60372 401 aaPredicted RBP5.25□□□□□ -1.57
CCDC40-212ENST00000574799 P0C880 135 aa5.24□□□□□ -1.57
CCDC40-212ENST00000574799 RYR1P21817 5038 aa5.24□□□□□ -1.57
CCDC40-212ENST00000574799 RPL37P61927 97 aaKnown RBP5.23□□□□□ -1.57
CCDC40-212ENST00000574799 COX6B2Q6YFQ2 88 aa5.22□□□□□ -1.57
CCDC40-212ENST00000574799 MYCBP2O75592 4640 aa5.21□□□□□ -1.58
CCDC40-212ENST00000574799 KRTAP17-1Q9BYP8 105 aa5.21□□□□□ -1.58
CCDC40-212ENST00000574799 C10orf95Q9H7T3 257 aa5.18□□□□□ -1.58
CCDC40-212ENST00000574799 C20orf166-AS1Q96NR2 134 aa5.16□□□□□ -1.58
CCDC40-212ENST00000574799 KIAA1109Q2LD37 5005 aa5.15□□□□□ -1.58
CCDC40-212ENST00000574799 ABCA13Q86UQ4 5058 aa5.12□□□□□ -1.59
CCDC40-212ENST00000574799 LPAP08519 4548 aa5.11□□□□□ -1.59
CCDC40-212ENST00000574799 SMR3BP02814 79 aaPredicted RBP5.09□□□□□ -1.59
CCDC40-212ENST00000574799 TPRXLQ17RH7 258 aa5.09□□□□□ -1.6
CCDC40-212ENST00000574799 KRTAP3-1Q9BYR8 98 aa5.07□□□□□ -1.6
CCDC40-212ENST00000574799 A0A0A0MQY5 61 aa5.04□□□□□ -1.6
CCDC40-212ENST00000574799 S4R3F8 94 aa5□□□□□ -1.61
CCDC40-212ENST00000574799 KRTAP13-4Q3LI77 160 aa4.97□□□□□ -1.61
CCDC40-212ENST00000574799 LUZP6Q538Z0 58 aa4.97□□□□□ -1.61
CCDC40-212ENST00000574799 RPS29P62273 56 aaKnown RBP4.95□□□□□ -1.62
CCDC40-212ENST00000574799 KRTAP15-1Q3LI76 137 aa4.95□□□□□ -1.62
CCDC40-212ENST00000574799 LRP2P98164 4655 aa4.93□□□□□ -1.62
CCDC40-212ENST00000574799 KRTAP10-6P60371 365 aaPredicted RBP4.92□□□□□ -1.62
CCDC40-212ENST00000574799 KRTAP10-8P60410 259 aa4.9□□□□□ -1.62
CCDC40-212ENST00000574799 KRTAP12-2P59991 146 aa4.9□□□□□ -1.63
CCDC40-212ENST00000574799 MT1HL1P0DM35 61 aa4.86□□□□□ -1.63
CCDC40-212ENST00000574799 Q5VSD8 79 aa4.85□□□□□ -1.63
CCDC40-212ENST00000574799 HERC2O95714 4834 aa4.83□□□□□ -1.64
CCDC40-212ENST00000574799 MUC17Q685J3 4493 aa4.83□□□□□ -1.64
CCDC40-212ENST00000574799 KRTAP4-5Q9BYR2 181 aa4.82□□□□□ -1.64
CCDC40-212ENST00000574799 KRTAP3-2Q9BYR7 98 aa4.81□□□□□ -1.64
CCDC40-212ENST00000574799 KRTAP12-1P59990 96 aa4.81□□□□□ -1.64
CCDC40-212ENST00000574799 PCLOQ9Y6V0 5065 aa4.81□□□□□ -1.64
CCDC40-212ENST00000574799 PLAC4Q8WY50 150 aa4.8□□□□□ -1.64
CCDC40-212ENST00000574799 M0QZ58 72 aa4.8□□□□□ -1.64
CCDC40-212ENST00000574799 KRTAP3-3Q9BYR6 98 aa4.8□□□□□ -1.64
CCDC40-212ENST00000574799 R4GN34 69 aa4.78□□□□□ -1.64
CCDC40-212ENST00000574799 BIRC6Q9NR09 4857 aa4.76□□□□□ -1.65
CCDC40-212ENST00000574799 MUC2Q02817 5179 aa4.75□□□□□ -1.65
CCDC40-212ENST00000574799 XP32Q5T750 250 aa4.74□□□□□ -1.65
CCDC40-212ENST00000574799 HERC1Q15751 4861 aa4.72□□□□□ -1.65
CCDC40-212ENST00000574799 CAMK2N1Q7Z7J9 78 aa4.69□□□□□ -1.66
CCDC40-212ENST00000574799 J3QL48 77 aa4.67□□□□□ -1.66
CCDC40-212ENST00000574799 HMCN2Q8NDA2 5059 aa4.63□□□□□ -1.67
CCDC40-212ENST00000574799 FLGP20930 4061 aaPredicted RBP4.63□□□□□ -1.67
CCDC40-212ENST00000574799 KRTAP4-1Q9BYQ7 146 aa4.54□□□□□ -1.68
CCDC40-212ENST00000574799 KRTAP19-2Q3LHN2 52 aa4.53□□□□□ -1.68
CCDC40-212ENST00000574799 PP632Q6XCG6 107 aa4.52□□□□□ -1.69
CCDC40-212ENST00000574799 FAT4Q6V0I7 4981 aa4.48□□□□□ -1.69
CCDC40-212ENST00000574799 UBR4Q5T4S7 5183 aa4.45□□□□□ -1.7
CCDC40-212ENST00000574799 SEC61BP60468 96 aaKnown RBP4.44□□□□□ -1.7
CCDC40-212ENST00000574799 RNF213Q63HN8 5207 aa4.44□□□□□ -1.7
CCDC40-212ENST00000574799 TNP1P09430 55 aa4.4□□□□□ -1.71
CCDC40-212ENST00000574799 LORP23490 312 aaPredicted RBP4.37□□□□□ -1.71
CCDC40-212ENST00000574799 LCE2CQ5TA81 110 aa4.27□□□□□ -1.73
CCDC40-212ENST00000574799 M0R2T5 61 aa4.22□□□□□ -1.73
CCDC40-212ENST00000574799 PRO2289Q9P1D8 64 aa4.19□□□□□ -1.74
CCDC40-212ENST00000574799 INE1O15225 51 aa4.08□□□□□ -1.76
CCDC40-212ENST00000574799 MT1HP80294 61 aa4.07□□□□□ -1.76
CCDC40-212ENST00000574799 KRTAP23-1A1A580 65 aa4.05□□□□□ -1.76
CCDC40-212ENST00000574799 SPRR5A0A1B0GTR4 108 aa4.05□□□□□ -1.76
CCDC40-212ENST00000574799 KRTAP9-8Q9BYQ0 159 aa4.01□□□□□ -1.77
CCDC40-212ENST00000574799 KRTAP19-1Q8IUB9 90 aa4□□□□□ -1.77
CCDC40-212ENST00000574799 LCE3AQ5TA76 89 aa3.99□□□□□ -1.77
CCDC40-212ENST00000574799 MT1FP04733 61 aa3.97□□□□□ -1.77
CCDC40-212ENST00000574799 MT2AP02795 61 aa3.94□□□□□ -1.78
CCDC40-212ENST00000574799 SPRR2GQ9BYE4 73 aa3.94□□□□□ -1.78
CCDC40-212ENST00000574799 FSIP2Q5CZC0 6907 aa3.93□□□□□ -1.78
CCDC40-212ENST00000574799 USH2AO75445 5202 aa3.9□□□□□ -1.79
CCDC40-212ENST00000574799 KRTAP10-10P60014 251 aa3.86□□□□□ -1.79
CCDC40-212ENST00000574799 KRTAP9-3Q9BYQ3 159 aa3.83□□□□□ -1.8
CCDC40-212ENST00000574799 KRTAP12-3P60328 96 aa3.82□□□□□ -1.8
CCDC40-212ENST00000574799 MT1BP07438 61 aa3.81□□□□□ -1.8
CCDC40-212ENST00000574799 LCE2AQ5TA79 106 aaPredicted RBP3.81□□□□□ -1.8
CCDC40-212ENST00000574799 KRTAP19-8Q3LI54 63 aa3.8□□□□□ -1.8
CCDC40-212ENST00000574799 KRTAP10-12P60413 245 aa3.76□□□□□ -1.81
CCDC40-212ENST00000574799 KRTAP8-1Q8IUC2 63 aa3.75□□□□□ -1.81
CCDC40-212ENST00000574799 KRTAP10-5P60370 271 aa3.75□□□□□ -1.81
CCDC40-212ENST00000574799 MT1XP80297 61 aa3.74□□□□□ -1.81
CCDC40-212ENST00000574799 KMT2DO14686 5537 aa3.73□□□□□ -1.81
CCDC40-212ENST00000574799 LCE2BO14633 110 aa3.73□□□□□ -1.81
CCDC40-212ENST00000574799 OBSCNQ5VST9 7968 aa3.68□□□□□ -1.82
CCDC40-212ENST00000574799 SSPOA2VEC9 5147 aa3.68□□□□□ -1.82
CCDC40-212ENST00000574799 KRTAP10-7P60409 375 aaPredicted RBP3.61□□□□□ -1.83
CCDC40-212ENST00000574799 LCE3CQ5T5A8 94 aa3.53□□□□□ -1.84
CCDC40-212ENST00000574799 SYNE1Q8NF91 8797 aaKnown RBP3.52□□□□□ -1.85
CCDC40-212ENST00000574799 KRTAP19-5Q3LI72 72 aa3.5□□□□□ -1.85
CCDC40-212ENST00000574799 KRTAP4-8A0A0G2JLE6 195 aa3.45□□□□□ -1.86
CCDC40-212ENST00000574799 KRTAP4-8Q9BYQ9 185 aa3.45□□□□□ -1.86
CCDC40-212ENST00000574799 FCGBPQ9Y6R7 5405 aaPredicted RBP3.38□□□□□ -1.87
CCDC40-212ENST00000574799 KRTAP19-7Q3SYF9 63 aa3.36□□□□□ -1.87
CCDC40-212ENST00000574799 KRTAP19-6Q3LI70 58 aa3.34□□□□□ -1.87
CCDC40-212ENST00000574799 KRTAP4-7Q9BYR0 210 aa3.34□□□□□ -1.88
CCDC40-212ENST00000574799 KRTAP9-6A8MVA2 160 aa3.33□□□□□ -1.88
CCDC40-212ENST00000574799 CRCT1Q9UGL9 99 aa3.3□□□□□ -1.88
CCDC40-212ENST00000574799 MUC12Q9UKN1 5478 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms