RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 A0A0D9SG42 100 aa8.88□□□□□ -0.99
VPS53-215ENST00000573028 KRTAP25-1Q3LHN0 102 aa8.86□□□□□ -0.99
VPS53-215ENST00000573028 MYCBP2O75592 4640 aa8.86□□□□□ -0.99
VPS53-215ENST00000573028 KRTAP10-8P60410 259 aa8.79□□□□□ -1
VPS53-215ENST00000573028 FAT3Q8TDW7 4589 aa8.79□□□□□ -1
VPS53-215ENST00000573028 HSPG2P98160 4391 aa8.78□□□□□ -1
VPS53-215ENST00000573028 KMT2CQ8NEZ4 4911 aaKnown RBP8.78□□□□□ -1
VPS53-215ENST00000573028 H3BS24 57 aa8.76□□□□□ -1.01
VPS53-215ENST00000573028 KRTAP13-4Q3LI77 160 aa8.76□□□□□ -1.01
VPS53-215ENST00000573028 KRTAP10-6P60371 365 aaPredicted RBP8.75□□□□□ -1.01
VPS53-215ENST00000573028 Q5VSD8 79 aa8.75□□□□□ -1.01
VPS53-215ENST00000573028 RPL37P61927 97 aaKnown RBP8.75□□□□□ -1.01
VPS53-215ENST00000573028 RYR2Q92736 4967 aa8.74□□□□□ -1.01
VPS53-215ENST00000573028 S4R3F8 94 aa8.74□□□□□ -1.01
VPS53-215ENST00000573028 XP32Q5T750 250 aa8.73□□□□□ -1.01
VPS53-215ENST00000573028 ROMO1P60602 79 aa8.68□□□□□ -1.02
VPS53-215ENST00000573028 P0C880 135 aa8.68□□□□□ -1.02
VPS53-215ENST00000573028 TNXBP22105 4242 aa8.67□□□□□ -1.02
VPS53-215ENST00000573028 KRTAP21-3Q3LHN1 58 aa8.64□□□□□ -1.03
VPS53-215ENST00000573028 C10orf95Q9H7T3 257 aa8.55□□□□□ -1.04
VPS53-215ENST00000573028 KRTAP17-1Q9BYP8 105 aa8.54□□□□□ -1.04
VPS53-215ENST00000573028 SPINT4Q6UDR6 99 aa8.54□□□□□ -1.04
VPS53-215ENST00000573028 LPAP08519 4548 aa8.5□□□□□ -1.05
VPS53-215ENST00000573028 TPRXLQ17RH7 258 aa8.5□□□□□ -1.05
VPS53-215ENST00000573028 KIAA1109Q2LD37 5005 aa8.49□□□□□ -1.05
VPS53-215ENST00000573028 KRTAP12-2P59991 146 aa8.49□□□□□ -1.05
VPS53-215ENST00000573028 LRP2P98164 4655 aa8.46□□□□□ -1.06
VPS53-215ENST00000573028 RYR1P21817 5038 aa8.44□□□□□ -1.06
VPS53-215ENST00000573028 MT1HL1P0DM35 61 aa8.44□□□□□ -1.06
VPS53-215ENST00000573028 RYR3Q15413 4870 aa8.43□□□□□ -1.06
VPS53-215ENST00000573028 KRTAP12-1P59990 96 aa8.37□□□□□ -1.07
VPS53-215ENST00000573028 M0QZ58 72 aa8.25□□□□□ -1.09
VPS53-215ENST00000573028 ABCA13Q86UQ4 5058 aa8.2□□□□□ -1.1
VPS53-215ENST00000573028 R4GN34 69 aa8.19□□□□□ -1.1
VPS53-215ENST00000573028 EPPK1P58107 5090 aaKnown RBP8.14□□□□□ -1.11
VPS53-215ENST00000573028 KRTAP4-5Q9BYR2 181 aa8.12□□□□□ -1.11
VPS53-215ENST00000573028 NDUFAF8A1L188 74 aa8.1□□□□□ -1.11
VPS53-215ENST00000573028 KRTAP15-1Q3LI76 137 aa8.07□□□□□ -1.12
VPS53-215ENST00000573028 LORP23490 312 aaPredicted RBP8.06□□□□□ -1.12
VPS53-215ENST00000573028 SEC61BP60468 96 aaKnown RBP8.01□□□□□ -1.13
VPS53-215ENST00000573028 KRTAP4-1Q9BYQ7 146 aa7.97□□□□□ -1.13
VPS53-215ENST00000573028 LCE2BO14633 110 aa7.96□□□□□ -1.14
VPS53-215ENST00000573028 MUC17Q685J3 4493 aa7.88□□□□□ -1.15
VPS53-215ENST00000573028 CAMK2N1Q7Z7J9 78 aa7.84□□□□□ -1.15
VPS53-215ENST00000573028 MUC2Q02817 5179 aa7.83□□□□□ -1.16
VPS53-215ENST00000573028 LCE2CQ5TA81 110 aa7.79□□□□□ -1.16
VPS53-215ENST00000573028 PLAC4Q8WY50 150 aa7.76□□□□□ -1.17
VPS53-215ENST00000573028 HERC2O95714 4834 aa7.74□□□□□ -1.17
VPS53-215ENST00000573028 KRTAP19-2Q3LHN2 52 aa7.69□□□□□ -1.18
VPS53-215ENST00000573028 LCE2AQ5TA79 106 aaPredicted RBP7.62□□□□□ -1.19
VPS53-215ENST00000573028 PP632Q6XCG6 107 aa7.53□□□□□ -1.2
VPS53-215ENST00000573028 FLGP20930 4061 aaPredicted RBP7.49□□□□□ -1.21
VPS53-215ENST00000573028 LUZP6Q538Z0 58 aa7.48□□□□□ -1.21
VPS53-215ENST00000573028 TNP1P09430 55 aa7.45□□□□□ -1.22
VPS53-215ENST00000573028 PCLOQ9Y6V0 5065 aa7.45□□□□□ -1.22
VPS53-215ENST00000573028 FAT4Q6V0I7 4981 aa7.44□□□□□ -1.22
VPS53-215ENST00000573028 HERC1Q15751 4861 aa7.44□□□□□ -1.22
VPS53-215ENST00000573028 BIRC6Q9NR09 4857 aa7.4□□□□□ -1.22
VPS53-215ENST00000573028 M0R2T5 61 aa7.34□□□□□ -1.23
VPS53-215ENST00000573028 A0A0A0MQY5 61 aa7.33□□□□□ -1.24
VPS53-215ENST00000573028 HMCN2Q8NDA2 5059 aa7.23□□□□□ -1.25
VPS53-215ENST00000573028 RNF213Q63HN8 5207 aa7.21□□□□□ -1.26
VPS53-215ENST00000573028 KRTAP19-1Q8IUB9 90 aa7.18□□□□□ -1.26
VPS53-215ENST00000573028 SPRR2GQ9BYE4 73 aa7.14□□□□□ -1.27
VPS53-215ENST00000573028 KRTAP10-10P60014 251 aa7.12□□□□□ -1.27
VPS53-215ENST00000573028 KRTAP23-1A1A580 65 aa7.12□□□□□ -1.27
VPS53-215ENST00000573028 LCE3AQ5TA76 89 aa7.07□□□□□ -1.28
VPS53-215ENST00000573028 UBR4Q5T4S7 5183 aa7.07□□□□□ -1.28
VPS53-215ENST00000573028 MT1HP80294 61 aa7.06□□□□□ -1.28
VPS53-215ENST00000573028 MT1FP04733 61 aa7.03□□□□□ -1.28
VPS53-215ENST00000573028 SPRR5A0A1B0GTR4 108 aa7.01□□□□□ -1.29
VPS53-215ENST00000573028 MT2AP02795 61 aa7□□□□□ -1.29
VPS53-215ENST00000573028 KRTAP9-8Q9BYQ0 159 aa6.89□□□□□ -1.31
VPS53-215ENST00000573028 MT1BP07438 61 aa6.78□□□□□ -1.32
VPS53-215ENST00000573028 KRTAP10-5P60370 271 aa6.77□□□□□ -1.33
VPS53-215ENST00000573028 KRTAP19-8Q3LI54 63 aa6.77□□□□□ -1.33
VPS53-215ENST00000573028 MT1XP80297 61 aa6.76□□□□□ -1.33
VPS53-215ENST00000573028 KRTAP8-1Q8IUC2 63 aa6.76□□□□□ -1.33
VPS53-215ENST00000573028 KRTAP10-12P60413 245 aa6.72□□□□□ -1.33
VPS53-215ENST00000573028 KRTAP12-3P60328 96 aa6.71□□□□□ -1.34
VPS53-215ENST00000573028 KRTAP10-7P60409 375 aaPredicted RBP6.67□□□□□ -1.34
VPS53-215ENST00000573028 KRTAP9-3Q9BYQ3 159 aa6.58□□□□□ -1.36
VPS53-215ENST00000573028 USH2AO75445 5202 aa6.5□□□□□ -1.37
VPS53-215ENST00000573028 PRO2289Q9P1D8 64 aa6.5□□□□□ -1.37
VPS53-215ENST00000573028 KMT2DO14686 5537 aa6.46□□□□□ -1.38
VPS53-215ENST00000573028 KRTAP19-5Q3LI72 72 aa6.4□□□□□ -1.38
VPS53-215ENST00000573028 KRTAP4-8A0A0G2JLE6 195 aa6.3□□□□□ -1.4
VPS53-215ENST00000573028 KRTAP4-8Q9BYQ9 185 aa6.3□□□□□ -1.4
VPS53-215ENST00000573028 INE1O15225 51 aa6.29□□□□□ -1.4
VPS53-215ENST00000573028 LCE3CQ5T5A8 94 aa6.27□□□□□ -1.41
VPS53-215ENST00000573028 KRTAP4-7Q9BYR0 210 aa6.12□□□□□ -1.43
VPS53-215ENST00000573028 KRTAP9-6A8MVA2 160 aa6.11□□□□□ -1.43
VPS53-215ENST00000573028 KRTAP19-7Q3SYF9 63 aa6.02□□□□□ -1.45
VPS53-215ENST00000573028 FSIP2Q5CZC0 6907 aa6.01□□□□□ -1.45
VPS53-215ENST00000573028 MT1LQ93083 61 aa5.86□□□□□ -1.47
VPS53-215ENST00000573028 MT1EP04732 61 aa5.83□□□□□ -1.48
VPS53-215ENST00000573028 KRTAP2-3P0C7H8 128 aa5.8□□□□□ -1.48
VPS53-215ENST00000573028 KRTAP2-4Q9BYR9 128 aa5.8□□□□□ -1.48
VPS53-215ENST00000573028 KRTAP2-1Q9BYU5 128 aa5.8□□□□□ -1.48
VPS53-215ENST00000573028 SSPOA2VEC9 5147 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms