RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 LCA10Q71F78 164 aa6.13□□□□□ -1.43
CLK3-224ENST00000568605 KRTAP9-3Q9BYQ3 159 aa6.12□□□□□ -1.43
CLK3-224ENST00000568605 A8MUN3 132 aa6.11□□□□□ -1.43
CLK3-224ENST00000568605 FAM236AA0A1B0GUQ0 79 aa6.09□□□□□ -1.43
CLK3-224ENST00000568605 FAM236BA0A1B0GV22 79 aa6.09□□□□□ -1.43
CLK3-224ENST00000568605 MT-ATP8P03928 68 aa6.08□□□□□ -1.44
CLK3-224ENST00000568605 SMIM20Q8N5G0 67 aa6.07□□□□□ -1.44
CLK3-224ENST00000568605 KLKP1Q107X0 134 aa6.05□□□□□ -1.44
CLK3-224ENST00000568605 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.03□□□□□ -1.44
CLK3-224ENST00000568605 NDUFC1O43677 76 aa6.02□□□□□ -1.45
CLK3-224ENST00000568605 USH2AO75445 5202 aa6.02□□□□□ -1.45
CLK3-224ENST00000568605 TRAV7A0A075B6U4 112 aa6□□□□□ -1.45
CLK3-224ENST00000568605 DMAC1Q96GE9 116 aa5.95□□□□□ -1.46
CLK3-224ENST00000568605 SSPOA2VEC9 5147 aa5.94□□□□□ -1.46
CLK3-224ENST00000568605 H0YAA0 97 aa5.91□□□□□ -1.46
CLK3-224ENST00000568605 CRIPTQ9P021 101 aa5.91□□□□□ -1.46
CLK3-224ENST00000568605 LCE3BQ5TA77 95 aa5.9□□□□□ -1.46
CLK3-224ENST00000568605 KRTAP19-1Q8IUB9 90 aa5.9□□□□□ -1.46
CLK3-224ENST00000568605 SERP2Q8N6R1 65 aa5.87□□□□□ -1.47
CLK3-224ENST00000568605 SPRR2GQ9BYE4 73 aa5.87□□□□□ -1.47
CLK3-224ENST00000568605 KRTAP19-6Q3LI70 58 aa5.86□□□□□ -1.47
CLK3-224ENST00000568605 ACYP2P14621 99 aa5.85□□□□□ -1.47
CLK3-224ENST00000568605 Q5VV11 94 aa5.84□□□□□ -1.47
CLK3-224ENST00000568605 SNURFQ9Y675 71 aa5.84□□□□□ -1.47
CLK3-224ENST00000568605 ADM2Q7Z4H4 148 aa5.83□□□□□ -1.48
CLK3-224ENST00000568605 C20orf197Q8N268 126 aa5.82□□□□□ -1.48
CLK3-224ENST00000568605 SPTSSBQ8NFR3 76 aa5.81□□□□□ -1.48
CLK3-224ENST00000568605 KRTAP19-8Q3LI54 63 aa5.79□□□□□ -1.48
CLK3-224ENST00000568605 CHKB-CPT1BH3BT56 60 aa5.78□□□□□ -1.48
CLK3-224ENST00000568605 PCP4P48539 62 aa5.78□□□□□ -1.48
CLK3-224ENST00000568605 SPANXA2-OT1Q8N9U9 137 aa5.78□□□□□ -1.48
CLK3-224ENST00000568605 FCGBPQ9Y6R7 5405 aaPredicted RBP5.76□□□□□ -1.49
CLK3-224ENST00000568605 MT1BP07438 61 aa5.75□□□□□ -1.49
CLK3-224ENST00000568605 KRTAP4-12Q9BQ66 201 aa5.75□□□□□ -1.49
CLK3-224ENST00000568605 KRTAP4-8A0A0G2JLE6 195 aa5.72□□□□□ -1.49
CLK3-224ENST00000568605 COX7CP15954 63 aa5.72□□□□□ -1.49
CLK3-224ENST00000568605 KRTAP9-9Q9BYP9 154 aa5.72□□□□□ -1.49
CLK3-224ENST00000568605 KRTAP9-4Q9BYQ2 154 aa5.72□□□□□ -1.49
CLK3-224ENST00000568605 R4GN34 69 aa5.72□□□□□ -1.49
CLK3-224ENST00000568605 H3BS24 57 aa5.7□□□□□ -1.5
CLK3-224ENST00000568605 A6NN06 94 aa5.69□□□□□ -1.5
CLK3-224ENST00000568605 P0C880 135 aa5.68□□□□□ -1.5
CLK3-224ENST00000568605 KRTAP9-7A8MTY7 169 aa5.67□□□□□ -1.5
CLK3-224ENST00000568605 M0QZ58 72 aa5.66□□□□□ -1.5
CLK3-224ENST00000568605 MACF1Q9UPN3 7388 aaKnown RBP5.63□□□□□ -1.51
CLK3-224ENST00000568605 KRTAP10-5P60370 271 aa5.62□□□□□ -1.51
CLK3-224ENST00000568605 ANAPC13Q9BS18 74 aa5.62□□□□□ -1.51
CLK3-224ENST00000568605 PLAC4Q8WY50 150 aa5.61□□□□□ -1.51
CLK3-224ENST00000568605 COA5Q86WW8 74 aa5.59□□□□□ -1.51
CLK3-224ENST00000568605 H7BZZ5 65 aa5.58□□□□□ -1.52
CLK3-224ENST00000568605 LINC01554Q52M75 96 aa5.56□□□□□ -1.52
CLK3-224ENST00000568605 PRO2289Q9P1D8 64 aa5.56□□□□□ -1.52
CLK3-224ENST00000568605 KRTAP4-7Q9BYR0 210 aa5.55□□□□□ -1.52
CLK3-224ENST00000568605 CYSTM1Q9H1C7 97 aa5.53□□□□□ -1.52
CLK3-224ENST00000568605 SEC61GP60059 68 aa5.51□□□□□ -1.53
CLK3-224ENST00000568605 LCE1DQ5T752 114 aa5.49□□□□□ -1.53
CLK3-224ENST00000568605 SERP1Q9Y6X1 66 aa5.48□□□□□ -1.53
CLK3-224ENST00000568605 KRTAP6-3Q3LI67 103 aa5.46□□□□□ -1.54
CLK3-224ENST00000568605 SYNE2Q8WXH0 6885 aaKnown RBP5.46□□□□□ -1.54
CLK3-224ENST00000568605 ATP5EP56381 51 aaPredicted RBP5.45□□□□□ -1.54
CLK3-224ENST00000568605 CCDC179H3BU77 68 aa5.44□□□□□ -1.54
CLK3-224ENST00000568605 MT1XP80297 61 aa5.44□□□□□ -1.54
CLK3-224ENST00000568605 KRTAP13-4Q3LI77 160 aa5.35□□□□□ -1.55
CLK3-224ENST00000568605 A0A1B0GU69 56 aa5.34□□□□□ -1.55
CLK3-224ENST00000568605 TMEM258P61165 79 aa5.34□□□□□ -1.55
CLK3-224ENST00000568605 KRTAP4-9Q9BYQ8 210 aa5.34□□□□□ -1.55
CLK3-224ENST00000568605 A0A1B0GU33 70 aa5.33□□□□□ -1.56
CLK3-224ENST00000568605 KRTAP12-2P59991 146 aa5.32□□□□□ -1.56
CLK3-224ENST00000568605 CAMK2N1Q7Z7J9 78 aa5.3□□□□□ -1.56
CLK3-224ENST00000568605 KRTAP4-2Q9BYR5 136 aa5.29□□□□□ -1.56
CLK3-224ENST00000568605 KRTAP5-9P26371 169 aa5.28□□□□□ -1.56
CLK3-224ENST00000568605 PRR15LQ9BU68 103 aa5.28□□□□□ -1.56
CLK3-224ENST00000568605 A0A0D9SG42 100 aa5.26□□□□□ -1.57
CLK3-224ENST00000568605 SPATA8Q6RVD6 105 aa5.26□□□□□ -1.57
CLK3-224ENST00000568605 SMIM26A0A096LP01 95 aa5.23□□□□□ -1.57
CLK3-224ENST00000568605 KRTAP8-1Q8IUC2 63 aa5.23□□□□□ -1.57
CLK3-224ENST00000568605 SPINT4Q6UDR6 99 aa5.19□□□□□ -1.58
CLK3-224ENST00000568605 SPRR2FQ96RM1 72 aa5.19□□□□□ -1.58
CLK3-224ENST00000568605 KRTAP10-7P60409 375 aaPredicted RBP5.18□□□□□ -1.58
CLK3-224ENST00000568605 KRTAP10-12P60413 245 aa5.18□□□□□ -1.58
CLK3-224ENST00000568605 KMT2DO14686 5537 aa5.18□□□□□ -1.58
CLK3-224ENST00000568605 LINC01558Q9Y6Z2 57 aa5.17□□□□□ -1.58
CLK3-224ENST00000568605 MUC12Q9UKN1 5478 aa5.16□□□□□ -1.58
CLK3-224ENST00000568605 KRTAP12-1P59990 96 aa5.14□□□□□ -1.59
CLK3-224ENST00000568605 NEBP20929 6669 aa5.12□□□□□ -1.59
CLK3-224ENST00000568605 KRTAP4-11Q9BYQ6 195 aa5.11□□□□□ -1.59
CLK3-224ENST00000568605 A8MU10 97 aa5.09□□□□□ -1.59
CLK3-224ENST00000568605 SPRR2EP22531 72 aa5.07□□□□□ -1.6
CLK3-224ENST00000568605 SPRR2BP35325 72 aa5.07□□□□□ -1.6
CLK3-224ENST00000568605 SPRR2AP35326 72 aa5.07□□□□□ -1.6
CLK3-224ENST00000568605 UQCR11O14957 56 aa5.06□□□□□ -1.6
CLK3-224ENST00000568605 V9GYY9 64 aa5.05□□□□□ -1.6
CLK3-224ENST00000568605 KRTAP20-1Q3LI63 56 aa5.01□□□□□ -1.61
CLK3-224ENST00000568605 MDN1Q9NU22 5596 aa4.98□□□□□ -1.61
CLK3-224ENST00000568605 LCE1AQ5T7P2 110 aa4.98□□□□□ -1.61
CLK3-224ENST00000568605 MIR22HGQ0VDD5 57 aa4.95□□□□□ -1.62
CLK3-224ENST00000568605 Q1T7F1 81 aa4.95□□□□□ -1.62
CLK3-224ENST00000568605 KRTAP5-3Q6L8H2 238 aa4.95□□□□□ -1.62
CLK3-224ENST00000568605 RPS28P62857 69 aaKnown RBP4.93□□□□□ -1.62
CLK3-224ENST00000568605 TNP1P09430 55 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms