RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 COX6B2Q6YFQ2 88 aa9.47□□□□□ -0.89
SMPD3-211ENST00000568373 CDC42SE1Q9NRR8 79 aa9.46□□□□□ -0.89
SMPD3-211ENST00000568373 SPTSSBQ8NFR3 76 aa9.44□□□□□ -0.9
SMPD3-211ENST00000568373 TPRXLQ17RH7 258 aa9.43□□□□□ -0.9
SMPD3-211ENST00000568373 A6NN06 94 aa9.41□□□□□ -0.9
SMPD3-211ENST00000568373 HERC1Q15751 4861 aa9.4□□□□□ -0.9
SMPD3-211ENST00000568373 J3QL48 77 aa9.39□□□□□ -0.91
SMPD3-211ENST00000568373 LRP2P98164 4655 aa9.34□□□□□ -0.91
SMPD3-211ENST00000568373 RBM12B-AS1Q9P1G2 102 aa9.3□□□□□ -0.92
SMPD3-211ENST00000568373 LPAP08519 4548 aa9.29□□□□□ -0.92
SMPD3-211ENST00000568373 UQCR11O14957 56 aa9.26□□□□□ -0.93
SMPD3-211ENST00000568373 SPATA8Q6RVD6 105 aa9.22□□□□□ -0.93
SMPD3-211ENST00000568373 MIR22HGQ0VDD5 57 aa9.19□□□□□ -0.94
SMPD3-211ENST00000568373 KRTAP3-3Q9BYR6 98 aa9.17□□□□□ -0.94
SMPD3-211ENST00000568373 S4R3F8 94 aa9.15□□□□□ -0.94
SMPD3-211ENST00000568373 H1FX-AS1Q4G0G2 97 aa9.12□□□□□ -0.95
SMPD3-211ENST00000568373 HMCN2Q8NDA2 5059 aa9.11□□□□□ -0.95
SMPD3-211ENST00000568373 A0A1B0GU33 70 aa9.08□□□□□ -0.96
SMPD3-211ENST00000568373 SEC61BP60468 96 aaKnown RBP9.08□□□□□ -0.96
SMPD3-211ENST00000568373 H0YAA0 97 aa9.03□□□□□ -0.96
SMPD3-211ENST00000568373 MUC17Q685J3 4493 aa8.98□□□□□ -0.97
SMPD3-211ENST00000568373 KRTAP10-6P60371 365 aaPredicted RBP8.96□□□□□ -0.97
SMPD3-211ENST00000568373 KRTAP3-2Q9BYR7 98 aa8.94□□□□□ -0.98
SMPD3-211ENST00000568373 PRAC1Q96KF2 57 aa8.91□□□□□ -0.98
SMPD3-211ENST00000568373 KRTAP4-1Q9BYQ7 146 aa8.9□□□□□ -0.98
SMPD3-211ENST00000568373 CSAG1Q6PB30 78 aa8.89□□□□□ -0.99
SMPD3-211ENST00000568373 UBR4Q5T4S7 5183 aa8.87□□□□□ -0.99
SMPD3-211ENST00000568373 ADM2Q7Z4H4 148 aa8.86□□□□□ -0.99
SMPD3-211ENST00000568373 MUC2Q02817 5179 aa8.84□□□□□ -0.99
SMPD3-211ENST00000568373 P0C880 135 aa8.84□□□□□ -0.99
SMPD3-211ENST00000568373 LINC01554Q52M75 96 aa8.81□□□□□ -1
SMPD3-211ENST00000568373 KRTAP13-4Q3LI77 160 aa8.79□□□□□ -1
SMPD3-211ENST00000568373 RNF213Q63HN8 5207 aa8.76□□□□□ -1.01
SMPD3-211ENST00000568373 KRTAP19-2Q3LHN2 52 aa8.73□□□□□ -1.01
SMPD3-211ENST00000568373 K7ERS5 55 aa8.68□□□□□ -1.02
SMPD3-211ENST00000568373 A0A0D9SG42 100 aa8.66□□□□□ -1.02
SMPD3-211ENST00000568373 M0QZ58 72 aa8.6□□□□□ -1.03
SMPD3-211ENST00000568373 FLGP20930 4061 aaPredicted RBP8.57□□□□□ -1.04
SMPD3-211ENST00000568373 KRTAP12-2P59991 146 aa8.47□□□□□ -1.05
SMPD3-211ENST00000568373 KRTAP12-1P59990 96 aa8.46□□□□□ -1.05
SMPD3-211ENST00000568373 R4GN34 69 aa8.46□□□□□ -1.05
SMPD3-211ENST00000568373 FAT4Q6V0I7 4981 aa8.44□□□□□ -1.06
SMPD3-211ENST00000568373 KRTAP25-1Q3LHN0 102 aa8.42□□□□□ -1.06
SMPD3-211ENST00000568373 SPINT4Q6UDR6 99 aa8.42□□□□□ -1.06
SMPD3-211ENST00000568373 LORP23490 312 aaPredicted RBP8.41□□□□□ -1.06
SMPD3-211ENST00000568373 ROMO1P60602 79 aa8.41□□□□□ -1.06
SMPD3-211ENST00000568373 LCE2CQ5TA81 110 aa8.36□□□□□ -1.07
SMPD3-211ENST00000568373 H3BS24 57 aa8.35□□□□□ -1.07
SMPD3-211ENST00000568373 CRIPTQ9P021 101 aa8.23□□□□□ -1.09
SMPD3-211ENST00000568373 MT1HP80294 61 aa8.17□□□□□ -1.1
SMPD3-211ENST00000568373 M0R2T5 61 aa8.12□□□□□ -1.11
SMPD3-211ENST00000568373 C10orf95Q9H7T3 257 aa8.04□□□□□ -1.12
SMPD3-211ENST00000568373 CAMK2N1Q7Z7J9 78 aa7.98□□□□□ -1.13
SMPD3-211ENST00000568373 SPRR2GQ9BYE4 73 aa7.96□□□□□ -1.13
SMPD3-211ENST00000568373 LCE2AQ5TA79 106 aaPredicted RBP7.94□□□□□ -1.14
SMPD3-211ENST00000568373 MT2AP02795 61 aa7.93□□□□□ -1.14
SMPD3-211ENST00000568373 KRTAP19-1Q8IUB9 90 aa7.92□□□□□ -1.14
SMPD3-211ENST00000568373 KRTAP9-8Q9BYQ0 159 aa7.92□□□□□ -1.14
SMPD3-211ENST00000568373 MT1FP04733 61 aa7.91□□□□□ -1.14
SMPD3-211ENST00000568373 KRTAP10-10P60014 251 aa7.88□□□□□ -1.15
SMPD3-211ENST00000568373 PLAC4Q8WY50 150 aa7.78□□□□□ -1.16
SMPD3-211ENST00000568373 KRTAP15-1Q3LI76 137 aa7.75□□□□□ -1.17
SMPD3-211ENST00000568373 KRTAP19-8Q3LI54 63 aa7.68□□□□□ -1.18
SMPD3-211ENST00000568373 TNP1P09430 55 aa7.64□□□□□ -1.19
SMPD3-211ENST00000568373 PP632Q6XCG6 107 aa7.63□□□□□ -1.19
SMPD3-211ENST00000568373 NDUFAF8A1L188 74 aa7.62□□□□□ -1.19
SMPD3-211ENST00000568373 KRTAP9-3Q9BYQ3 159 aa7.61□□□□□ -1.19
SMPD3-211ENST00000568373 MT1BP07438 61 aa7.57□□□□□ -1.2
SMPD3-211ENST00000568373 KRTAP23-1A1A580 65 aa7.5□□□□□ -1.21
SMPD3-211ENST00000568373 KRTAP10-5P60370 271 aa7.42□□□□□ -1.22
SMPD3-211ENST00000568373 MT1XP80297 61 aa7.42□□□□□ -1.22
SMPD3-211ENST00000568373 FSIP2Q5CZC0 6907 aa7.41□□□□□ -1.22
SMPD3-211ENST00000568373 USH2AO75445 5202 aa7.4□□□□□ -1.22
SMPD3-211ENST00000568373 LCE2BO14633 110 aa7.36□□□□□ -1.23
SMPD3-211ENST00000568373 LCE3AQ5TA76 89 aa7.28□□□□□ -1.24
SMPD3-211ENST00000568373 PRO2289Q9P1D8 64 aa7.25□□□□□ -1.25
SMPD3-211ENST00000568373 LCE2DQ5TA82 110 aaPredicted RBP7.24□□□□□ -1.25
SMPD3-211ENST00000568373 KRTAP9-2Q9BYQ4 174 aa7.21□□□□□ -1.26
SMPD3-211ENST00000568373 SSPOA2VEC9 5147 aa7.17□□□□□ -1.26
SMPD3-211ENST00000568373 KRTAP10-7P60409 375 aaPredicted RBP7.16□□□□□ -1.26
SMPD3-211ENST00000568373 KRTAP10-12P60413 245 aa7.16□□□□□ -1.26
SMPD3-211ENST00000568373 KRTAP8-1Q8IUC2 63 aa7.13□□□□□ -1.27
SMPD3-211ENST00000568373 LUZP6Q538Z0 58 aa7.02□□□□□ -1.29
SMPD3-211ENST00000568373 KRTAP12-3P60328 96 aa6.96□□□□□ -1.29
SMPD3-211ENST00000568373 SPRR5A0A1B0GTR4 108 aa6.94□□□□□ -1.3
SMPD3-211ENST00000568373 FCGBPQ9Y6R7 5405 aaPredicted RBP6.9□□□□□ -1.3
SMPD3-211ENST00000568373 CRCT1Q9UGL9 99 aa6.89□□□□□ -1.31
SMPD3-211ENST00000568373 A0A0A0MQY5 61 aa6.87□□□□□ -1.31
SMPD3-211ENST00000568373 KRTAP19-6Q3LI70 58 aa6.87□□□□□ -1.31
SMPD3-211ENST00000568373 KMT2DO14686 5537 aa6.8□□□□□ -1.32
SMPD3-211ENST00000568373 KRTAP19-5Q3LI72 72 aa6.8□□□□□ -1.32
SMPD3-211ENST00000568373 KRTAP4-8A0A0G2JLE6 195 aa6.78□□□□□ -1.32
SMPD3-211ENST00000568373 KRTAP4-8Q9BYQ9 185 aa6.78□□□□□ -1.32
SMPD3-211ENST00000568373 KRTAP9-6A0A140TA67 174 aa6.72□□□□□ -1.33
SMPD3-211ENST00000568373 MACF1Q9UPN3 7388 aaKnown RBP6.64□□□□□ -1.35
SMPD3-211ENST00000568373 KRTAP19-7Q3SYF9 63 aa6.62□□□□□ -1.35
SMPD3-211ENST00000568373 SYNE2Q8WXH0 6885 aaKnown RBP6.54□□□□□ -1.36
SMPD3-211ENST00000568373 LCE3CQ5T5A8 94 aa6.53□□□□□ -1.36
SMPD3-211ENST00000568373 MT1EP04732 61 aa6.46□□□□□ -1.37
SMPD3-211ENST00000568373 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms