RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 MINOS1Q5TGZ0 78 aa0.97□□□□□ -2.25
TRAV28-201ENST00000557548 Q5VSD8 79 aa0.97□□□□□ -2.25
TRAV28-201ENST00000557548 LINC00308Q8TCZ7 52 aa0.97□□□□□ -2.25
TRAV28-201ENST00000557548 PCLOQ9Y6V0 5065 aa0.97□□□□□ -2.25
TRAV28-201ENST00000557548 PRB3Q04118 309 aaPredicted RBP0.96□□□□□ -2.26
TRAV28-201ENST00000557548 DEFB108BQ8NET1 73 aa0.96□□□□□ -2.26
TRAV28-201ENST00000557548 STAB2Q8WWQ8 2551 aa0.96□□□□□ -2.26
TRAV28-201ENST00000557548 STARD9Q9P2P6 4700 aa0.96□□□□□ -2.26
TRAV28-201ENST00000557548 RYR2Q92736 4967 aa0.95□□□□□ -2.26
TRAV28-201ENST00000557548 H0YAA0 97 aa0.95□□□□□ -2.26
TRAV28-201ENST00000557548 SPRR1AP35321 89 aa0.95□□□□□ -2.26
TRAV28-201ENST00000557548 SNRPGP62308 76 aaKnown RBP0.95□□□□□ -2.26
TRAV28-201ENST00000557548 DEFB105AQ8NG35 78 aa0.95□□□□□ -2.26
TRAV28-201ENST00000557548 C6orf48Q9UBA6 75 aa0.95□□□□□ -2.26
TRAV28-201ENST00000557548 APLNQ9ULZ1 77 aa0.95□□□□□ -2.26
TRAV28-201ENST00000557548 A0A0D9SG42 100 aa0.94□□□□□ -2.26
TRAV28-201ENST00000557548 H1FX-AS1Q4G0G2 97 aa0.94□□□□□ -2.26
TRAV28-201ENST00000557548 DNAH9Q9NYC9 4486 aa0.93□□□□□ -2.26
TRAV28-201ENST00000557548 BIRC6Q9NR09 4857 aa0.93□□□□□ -2.26
TRAV28-201ENST00000557548 KIAA1109Q2LD37 5005 aa0.93□□□□□ -2.26
TRAV28-201ENST00000557548 IAPPP10997 89 aa0.93□□□□□ -2.26
TRAV28-201ENST00000557548 WFDC13Q8IUB5 93 aa0.93□□□□□ -2.26
TRAV28-201ENST00000557548 KMT2AQ03164 3969 aa0.92□□□□□ -2.26
TRAV28-201ENST00000557548 SPRR1BP22528 89 aa0.92□□□□□ -2.26
TRAV28-201ENST00000557548 LELP1Q5T871 98 aa0.92□□□□□ -2.26
TRAV28-201ENST00000557548 SMIM2Q9BVW6 85 aa0.92□□□□□ -2.26
TRAV28-201ENST00000557548 HUWE1Q7Z6Z7 4374 aaKnown RBP0.92□□□□□ -2.26
TRAV28-201ENST00000557548 DYNC2H1Q8NCM8 4307 aaKnown RBP0.91□□□□□ -2.26
TRAV28-201ENST00000557548 RPS27P42677 84 aaKnown RBP0.91□□□□□ -2.26
TRAV28-201ENST00000557548 ABCA13Q86UQ4 5058 aa0.91□□□□□ -2.26
TRAV28-201ENST00000557548 HECTD4Q9Y4D8 3996 aa0.9□□□□□ -2.26
TRAV28-201ENST00000557548 ALMS1Q8TCU4 4167 aa0.9□□□□□ -2.26
TRAV28-201ENST00000557548 H3BUX3 64 aa0.9□□□□□ -2.27
TRAV28-201ENST00000557548 NDUFA1O15239 70 aa0.9□□□□□ -2.27
TRAV28-201ENST00000557548 SACSQ9NZJ4 4579 aa0.89□□□□□ -2.27
TRAV28-201ENST00000557548 DNAH1Q9P2D7 4330 aa0.89□□□□□ -2.27
TRAV28-201ENST00000557548 DEFB130BP0DP73 79 aa0.89□□□□□ -2.27
TRAV28-201ENST00000557548 DEFB130AP0DP74 79 aa0.89□□□□□ -2.27
TRAV28-201ENST00000557548 DEFB136Q30KP8 78 aa0.89□□□□□ -2.27
TRAV28-201ENST00000557548 HERC2O95714 4834 aa0.89□□□□□ -2.27
TRAV28-201ENST00000557548 PKD1P98161 4303 aa0.88□□□□□ -2.27
TRAV28-201ENST00000557548 LINC01590Q5TEZ4 76 aa0.88□□□□□ -2.27
TRAV28-201ENST00000557548 KAAG1Q9UBP8 84 aa0.88□□□□□ -2.27
TRAV28-201ENST00000557548 KLK9Q2XQG4 91 aa0.87□□□□□ -2.27
TRAV28-201ENST00000557548 LEAP2Q969E1 77 aa0.87□□□□□ -2.27
TRAV28-201ENST00000557548 TTTY10Q9BZA0 68 aa0.87□□□□□ -2.27
TRAV28-201ENST00000557548 AHNAK2Q8IVF2 5795 aa0.87□□□□□ -2.27
TRAV28-201ENST00000557548 PLECQ15149 4684 aaKnown RBP0.86□□□□□ -2.27
TRAV28-201ENST00000557548 PKHD1P08F94 4074 aa0.86□□□□□ -2.27
TRAV28-201ENST00000557548 H3BSH0 61 aa0.86□□□□□ -2.27
TRAV28-201ENST00000557548 H3BUA1 57 aa0.86□□□□□ -2.27
TRAV28-201ENST00000557548 VPS13DQ5THJ4 4388 aa0.85□□□□□ -2.27
TRAV28-201ENST00000557548 RYR1P21817 5038 aa0.85□□□□□ -2.27
TRAV28-201ENST00000557548 WT1-ASQ06250 92 aa0.85□□□□□ -2.27
TRAV28-201ENST00000557548 WFDC10BQ8IUB3 73 aa0.85□□□□□ -2.27
TRAV28-201ENST00000557548 FAT2Q9NYQ8 4349 aa0.84□□□□□ -2.27
TRAV28-201ENST00000557548 DNAH6Q9C0G6 4158 aa0.84□□□□□ -2.27
TRAV28-201ENST00000557548 DNAH2Q9P225 4427 aa0.84□□□□□ -2.28
TRAV28-201ENST00000557548 DNAH10Q8IVF4 4471 aa0.83□□□□□ -2.28
TRAV28-201ENST00000557548 HSPG2P98160 4391 aa0.83□□□□□ -2.28
TRAV28-201ENST00000557548 APOBP04114 4563 aaKnown RBP0.82□□□□□ -2.28
TRAV28-201ENST00000557548 DNAH17Q9UFH2 4485 aa0.82□□□□□ -2.28
TRAV28-201ENST00000557548 UBR4Q5T4S7 5183 aa0.82□□□□□ -2.28
TRAV28-201ENST00000557548 DEFB4AO15263 64 aa0.82□□□□□ -2.28
TRAV28-201ENST00000557548 APELAP0DMC3 54 aa0.82□□□□□ -2.28
TRAV28-201ENST00000557548 DEFB135Q30KP9 77 aa0.82□□□□□ -2.28
TRAV28-201ENST00000557548 RPL39P5Q59GN2 51 aa0.82□□□□□ -2.28
TRAV28-201ENST00000557548 SRRM2Q9UQ35 2752 aaKnown RBP0.82□□□□□ -2.28
TRAV28-201ENST00000557548 HERC1Q15751 4861 aa0.81□□□□□ -2.28
TRAV28-201ENST00000557548 IGLV5-48A0A075B6I7 105 aa0.81□□□□□ -2.28
TRAV28-201ENST00000557548 DEFB131AP59861 70 aa0.81□□□□□ -2.28
TRAV28-201ENST00000557548 DEFB1P60022 68 aa0.81□□□□□ -2.28
TRAV28-201ENST00000557548 DMBT1Q9UGM3 2413 aaPredicted RBP0.81□□□□□ -2.28
TRAV28-201ENST00000557548 LRP1Q07954 4544 aaKnown RBP0.81□□□□□ -2.28
TRAV28-201ENST00000557548 MYCBP2O75592 4640 aa0.8□□□□□ -2.28
TRAV28-201ENST00000557548 DNAH11Q96DT5 4516 aa0.8□□□□□ -2.28
TRAV28-201ENST00000557548 DYNC1H1Q14204 4646 aaKnown RBP0.8□□□□□ -2.28
TRAV28-201ENST00000557548 RNF213Q63HN8 5207 aa0.8□□□□□ -2.28
TRAV28-201ENST00000557548 S4R3F8 94 aa0.8□□□□□ -2.28
TRAV28-201ENST00000557548 DNAH5Q8TE73 4624 aa0.8□□□□□ -2.28
TRAV28-201ENST00000557548 FAT3Q8TDW7 4589 aa0.79□□□□□ -2.28
TRAV28-201ENST00000557548 SMR3BP02814 79 aaPredicted RBP0.79□□□□□ -2.28
TRAV28-201ENST00000557548 MT1HL1P0DM35 61 aa0.79□□□□□ -2.28
TRAV28-201ENST00000557548 PRLHP81277 87 aa0.79□□□□□ -2.28
TRAV28-201ENST00000557548 LRP1BQ9NZR2 4599 aa0.78□□□□□ -2.28
TRAV28-201ENST00000557548 K7EIM0 57 aa0.78□□□□□ -2.28
TRAV28-201ENST00000557548 ARHGAP5-AS1Q96IT6 56 aa0.78□□□□□ -2.28
TRAV28-201ENST00000557548 NOP10Q9NPE3 64 aaKnown RBP0.78□□□□□ -2.28
TRAV28-201ENST00000557548 VPS13BQ7Z7G8 4022 aa0.78□□□□□ -2.29
TRAV28-201ENST00000557548 LPAP08519 4548 aa0.77□□□□□ -2.29
TRAV28-201ENST00000557548 MMP24-AS1A0A0U1RRL7 71 aa0.77□□□□□ -2.29
TRAV28-201ENST00000557548 TMEM167AQ8TBQ9 72 aa0.77□□□□□ -2.29
TRAV28-201ENST00000557548 PKHD1L1Q86WI1 4243 aa0.77□□□□□ -2.29
TRAV28-201ENST00000557548 FAT1Q14517 4588 aa0.76□□□□□ -2.29
TRAV28-201ENST00000557548 A8MTW9 85 aa0.76□□□□□ -2.29
TRAV28-201ENST00000557548 RHPN1-AS1Q9BWJ2 59 aa0.76□□□□□ -2.29
TRAV28-201ENST00000557548 HMCN2Q8NDA2 5059 aa0.76□□□□□ -2.29
TRAV28-201ENST00000557548 LRP2P98164 4655 aa0.75□□□□□ -2.29
TRAV28-201ENST00000557548 POLR2KP53803 58 aaKnown RBP0.75□□□□□ -2.29
TRAV28-201ENST00000557548 MUC2Q02817 5179 aa0.74□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms