RNA–Protein interactions for RNA: ENST00000555353.5

FOXN3-209, Transcript of forkhead box N3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene FOXN3, Length 1,595 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-209ENST00000555353 PCP4P48539 62 aa10□□□□□ -0.81
FOXN3-209ENST00000555353 DMAC1Q96GE9 116 aa10□□□□□ -0.81
FOXN3-209ENST00000555353 KRTAP9-8Q9BYQ0 159 aa9.99□□□□□ -0.81
FOXN3-209ENST00000555353 ACYP2P14621 99 aa9.94□□□□□ -0.82
FOXN3-209ENST00000555353 S4R3F8 94 aa9.92□□□□□ -0.82
FOXN3-209ENST00000555353 MT2AP02795 61 aa9.89□□□□□ -0.83
FOXN3-209ENST00000555353 ATP5EP56381 51 aaPredicted RBP9.86□□□□□ -0.83
FOXN3-209ENST00000555353 TMEM258P61165 79 aa9.85□□□□□ -0.83
FOXN3-209ENST00000555353 KRTAP10-10P60014 251 aa9.82□□□□□ -0.84
FOXN3-209ENST00000555353 LCA10Q71F78 164 aa9.82□□□□□ -0.84
FOXN3-209ENST00000555353 MT1FP04733 61 aa9.81□□□□□ -0.84
FOXN3-209ENST00000555353 CHKB-CPT1BH3BT56 60 aa9.8□□□□□ -0.84
FOXN3-209ENST00000555353 KRTAP9-6A0A140TA67 174 aa9.78□□□□□ -0.84
FOXN3-209ENST00000555353 FSIP2Q5CZC0 6907 aa9.77□□□□□ -0.84
FOXN3-209ENST00000555353 CSAG1Q6PB30 78 aa9.76□□□□□ -0.85
FOXN3-209ENST00000555353 COA5Q86WW8 74 aa9.72□□□□□ -0.85
FOXN3-209ENST00000555353 SPTSSBQ8NFR3 76 aa9.71□□□□□ -0.85
FOXN3-209ENST00000555353 CRCT1Q9UGL9 99 aa9.71□□□□□ -0.85
FOXN3-209ENST00000555353 KRTAP3-3Q9BYR6 98 aa9.71□□□□□ -0.86
FOXN3-209ENST00000555353 KRTAP9-3Q9BYQ3 159 aa9.67□□□□□ -0.86
FOXN3-209ENST00000555353 LCE2BO14633 110 aa9.55□□□□□ -0.88
FOXN3-209ENST00000555353 SERP1Q9Y6X1 66 aa9.54□□□□□ -0.88
FOXN3-209ENST00000555353 USH2AO75445 5202 aa9.49□□□□□ -0.89
FOXN3-209ENST00000555353 H0YAA0 97 aa9.48□□□□□ -0.89
FOXN3-209ENST00000555353 ADM2Q7Z4H4 148 aa9.4□□□□□ -0.9
FOXN3-209ENST00000555353 SEC61GP60059 68 aa9.36□□□□□ -0.91
FOXN3-209ENST00000555353 SSPOA2VEC9 5147 aa9.35□□□□□ -0.91
FOXN3-209ENST00000555353 RPS28P62857 69 aaKnown RBP9.34□□□□□ -0.91
FOXN3-209ENST00000555353 KRTAP19-1Q8IUB9 90 aa9.29□□□□□ -0.92
FOXN3-209ENST00000555353 KRTAP3-2Q9BYR7 98 aa9.27□□□□□ -0.93
FOXN3-209ENST00000555353 A0A1B0GU69 56 aa9.25□□□□□ -0.93
FOXN3-209ENST00000555353 CRIPTQ9P021 101 aa9.25□□□□□ -0.93
FOXN3-209ENST00000555353 SMIM26A0A096LP01 95 aa9.24□□□□□ -0.93
FOXN3-209ENST00000555353 P0C880 135 aa9.24□□□□□ -0.93
FOXN3-209ENST00000555353 SPRR2GQ9BYE4 73 aa9.24□□□□□ -0.93
FOXN3-209ENST00000555353 LINC01558Q9Y6Z2 57 aa9.23□□□□□ -0.93
FOXN3-209ENST00000555353 V9GYY9 64 aa9.22□□□□□ -0.93
FOXN3-209ENST00000555353 PRR15LQ9BU68 103 aa9.21□□□□□ -0.93
FOXN3-209ENST00000555353 KRTAP19-6Q3LI70 58 aa9.18□□□□□ -0.94
FOXN3-209ENST00000555353 Q5VV11 94 aa9.14□□□□□ -0.95
FOXN3-209ENST00000555353 R4GN34 69 aa9.14□□□□□ -0.95
FOXN3-209ENST00000555353 Q1T7F1 81 aa9.13□□□□□ -0.95
FOXN3-209ENST00000555353 FCGBPQ9Y6R7 5405 aaPredicted RBP9.12□□□□□ -0.95
FOXN3-209ENST00000555353 KRTAP19-8Q3LI54 63 aa9.12□□□□□ -0.95
FOXN3-209ENST00000555353 M0QZ58 72 aa9.08□□□□□ -0.96
FOXN3-209ENST00000555353 MT1BP07438 61 aa9.07□□□□□ -0.96
FOXN3-209ENST00000555353 A0A1B0GU33 70 aa9.07□□□□□ -0.96
FOXN3-209ENST00000555353 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.02□□□□□ -0.97
FOXN3-209ENST00000555353 PSPHP1O15172 72 aa8.99□□□□□ -0.97
FOXN3-209ENST00000555353 A6NN06 94 aa8.91□□□□□ -0.98
FOXN3-209ENST00000555353 LINC01554Q52M75 96 aa8.91□□□□□ -0.98
FOXN3-209ENST00000555353 UQCR11O14957 56 aa8.9□□□□□ -0.98
FOXN3-209ENST00000555353 KRTAP13-4Q3LI77 160 aa8.9□□□□□ -0.98
FOXN3-209ENST00000555353 SPATA8Q6RVD6 105 aa8.89□□□□□ -0.99
FOXN3-209ENST00000555353 KRTAP9-7A8MTY7 169 aa8.82□□□□□ -1
FOXN3-209ENST00000555353 KRTAP10-5P60370 271 aa8.82□□□□□ -1
FOXN3-209ENST00000555353 MACF1Q9UPN3 7388 aaKnown RBP8.82□□□□□ -1
FOXN3-209ENST00000555353 PLAC4Q8WY50 150 aa8.79□□□□□ -1
FOXN3-209ENST00000555353 A0A0D9SG42 100 aa8.78□□□□□ -1
FOXN3-209ENST00000555353 A6NED7 52 aa8.76□□□□□ -1.01
FOXN3-209ENST00000555353 MIR22HGQ0VDD5 57 aa8.75□□□□□ -1.01
FOXN3-209ENST00000555353 A8MU10 97 aa8.69□□□□□ -1.02
FOXN3-209ENST00000555353 PRO2289Q9P1D8 64 aa8.66□□□□□ -1.02
FOXN3-209ENST00000555353 SYNE2Q8WXH0 6885 aaKnown RBP8.66□□□□□ -1.02
FOXN3-209ENST00000555353 SPINT4Q6UDR6 99 aa8.63□□□□□ -1.03
FOXN3-209ENST00000555353 MT1XP80297 61 aa8.6□□□□□ -1.03
FOXN3-209ENST00000555353 KRTAP12-1P59990 96 aa8.59□□□□□ -1.03
FOXN3-209ENST00000555353 KRTAP12-2P59991 146 aa8.53□□□□□ -1.04
FOXN3-209ENST00000555353 KRTAP6-3Q3LI67 103 aa8.53□□□□□ -1.04
FOXN3-209ENST00000555353 CAMK2N1Q7Z7J9 78 aa8.53□□□□□ -1.04
FOXN3-209ENST00000555353 CDC42SE1Q9NRR8 79 aa8.53□□□□□ -1.04
FOXN3-209ENST00000555353 K7ERS5 55 aa8.52□□□□□ -1.05
FOXN3-209ENST00000555353 BRK1Q8WUW1 75 aa8.36□□□□□ -1.07
FOXN3-209ENST00000555353 SVIPQ8NHG7 77 aa8.31□□□□□ -1.08
FOXN3-209ENST00000555353 KRTAP5-9P26371 169 aa8.26□□□□□ -1.09
FOXN3-209ENST00000555353 KMT2DO14686 5537 aa8.24□□□□□ -1.09
FOXN3-209ENST00000555353 KRTAP10-7P60409 375 aaPredicted RBP8.21□□□□□ -1.1
FOXN3-209ENST00000555353 KRTAP8-1Q8IUC2 63 aa8.19□□□□□ -1.1
FOXN3-209ENST00000555353 KRTAP10-12P60413 245 aa8.17□□□□□ -1.1
FOXN3-209ENST00000555353 MUC12Q9UKN1 5478 aa8.16□□□□□ -1.1
FOXN3-209ENST00000555353 C10orf95Q9H7T3 257 aa8.14□□□□□ -1.11
FOXN3-209ENST00000555353 KRTAP4-8A0A0G2JLE6 195 aa8.13□□□□□ -1.11
FOXN3-209ENST00000555353 SPRR2FQ96RM1 72 aa8.13□□□□□ -1.11
FOXN3-209ENST00000555353 KRTAP4-8Q9BYQ9 185 aa8.13□□□□□ -1.11
FOXN3-209ENST00000555353 NEBP20929 6669 aa8.09□□□□□ -1.11
FOXN3-209ENST00000555353 TNP1P09430 55 aa8.05□□□□□ -1.12
FOXN3-209ENST00000555353 ROMO1P60602 79 aa8.01□□□□□ -1.13
FOXN3-209ENST00000555353 PRO0628Q9UI54 55 aa7.97□□□□□ -1.13
FOXN3-209ENST00000555353 MDN1Q9NU22 5596 aa7.97□□□□□ -1.13
FOXN3-209ENST00000555353 KRTAP25-1Q3LHN0 102 aa7.95□□□□□ -1.14
FOXN3-209ENST00000555353 SPRR2EP22531 72 aa7.93□□□□□ -1.14
FOXN3-209ENST00000555353 SPRR2BP35325 72 aa7.93□□□□□ -1.14
FOXN3-209ENST00000555353 SPRR2AP35326 72 aa7.93□□□□□ -1.14
FOXN3-209ENST00000555353 PMAIP1Q13794 54 aa7.91□□□□□ -1.14
FOXN3-209ENST00000555353 LCE1AQ5T7P2 110 aa7.84□□□□□ -1.15
FOXN3-209ENST00000555353 KRTAP20-1Q3LI63 56 aa7.78□□□□□ -1.16
FOXN3-209ENST00000555353 LCE3AQ5TA76 89 aa7.7□□□□□ -1.18
FOXN3-209ENST00000555353 KRTAP23-1A1A580 65 aa7.68□□□□□ -1.18
FOXN3-209ENST00000555353 SPRR2DP22532 72 aa7.67□□□□□ -1.18
FOXN3-209ENST00000555353 KRTAP19-7Q3SYF9 63 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms