RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 HUWE1Q7Z6Z7 4374 aaKnown RBP2.81□□□□□ -1.96
SYNE2-216ENST00000555002 SPRR2FQ96RM1 72 aa2.81□□□□□ -1.96
SYNE2-216ENST00000555002 KRTAP10-7P60409 375 aaPredicted RBP2.81□□□□□ -1.96
SYNE2-216ENST00000555002 MT3P25713 68 aa2.8□□□□□ -1.96
SYNE2-216ENST00000555002 DNAH7Q8WXX0 4024 aa2.8□□□□□ -1.96
SYNE2-216ENST00000555002 MUC3AQ02505 3323 aa2.78□□□□□ -1.96
SYNE2-216ENST00000555002 DNAH1Q9P2D7 4330 aa2.77□□□□□ -1.97
SYNE2-216ENST00000555002 CSMD1Q96PZ7 3565 aa2.77□□□□□ -1.97
SYNE2-216ENST00000555002 RELNP78509 3460 aa2.74□□□□□ -1.97
SYNE2-216ENST00000555002 ZNF469Q96JG9 3925 aaPredicted RBP2.71□□□□□ -1.98
SYNE2-216ENST00000555002 KRTAP19-5Q3LI72 72 aa2.7□□□□□ -1.98
SYNE2-216ENST00000555002 CSMD3Q7Z407 3707 aa2.69□□□□□ -1.98
SYNE2-216ENST00000555002 SPRR2EP22531 72 aa2.68□□□□□ -1.98
SYNE2-216ENST00000555002 SPRR2BP35325 72 aa2.68□□□□□ -1.98
SYNE2-216ENST00000555002 SPRR2AP35326 72 aa2.68□□□□□ -1.98
SYNE2-216ENST00000555002 ANK2Q01484 3957 aa2.67□□□□□ -1.98
SYNE2-216ENST00000555002 KRTAP10-4P60372 401 aaPredicted RBP2.67□□□□□ -1.98
SYNE2-216ENST00000555002 CUBNO60494 3623 aa2.65□□□□□ -1.98
SYNE2-216ENST00000555002 LCE3BQ5TA77 95 aa2.65□□□□□ -1.98
SYNE2-216ENST00000555002 SVEP1Q4LDE5 3571 aa2.64□□□□□ -1.99
SYNE2-216ENST00000555002 MT1HP80294 61 aa2.63□□□□□ -1.99
SYNE2-216ENST00000555002 LCE3CQ5T5A8 94 aa2.62□□□□□ -1.99
SYNE2-216ENST00000555002 DNAH2Q9P225 4427 aa2.6□□□□□ -1.99
SYNE2-216ENST00000555002 MT2AP02795 61 aa2.59□□□□□ -1.99
SYNE2-216ENST00000555002 SPRR2DP22532 72 aa2.59□□□□□ -1.99
SYNE2-216ENST00000555002 KRTAP4-1Q9BYQ7 146 aa2.59□□□□□ -2
SYNE2-216ENST00000555002 MT1FP04733 61 aa2.55□□□□□ -2
SYNE2-216ENST00000555002 KMT2AQ03164 3969 aa2.54□□□□□ -2
SYNE2-216ENST00000555002 ANK3Q12955 4377 aaKnown RBP2.52□□□□□ -2.01
SYNE2-216ENST00000555002 VPS13BQ7Z7G8 4022 aa2.51□□□□□ -2.01
SYNE2-216ENST00000555002 LCE2BO14633 110 aa2.51□□□□□ -2.01
SYNE2-216ENST00000555002 KRTAP12-4P60329 112 aa2.5□□□□□ -2.01
SYNE2-216ENST00000555002 MT1GP13640 62 aa2.5□□□□□ -2.01
SYNE2-216ENST00000555002 DNAH6Q9C0G6 4158 aa2.5□□□□□ -2.01
SYNE2-216ENST00000555002 SPRR2GQ9BYE4 73 aa2.5□□□□□ -2.01
SYNE2-216ENST00000555002 DNAH10Q8IVF4 4471 aa2.44□□□□□ -2.02
SYNE2-216ENST00000555002 FRAS1Q86XX4 4008 aa2.44□□□□□ -2.02
SYNE2-216ENST00000555002 PRKDCP78527 4128 aaKnown RBP2.42□□□□□ -2.02
SYNE2-216ENST00000555002 LCE2CQ5TA81 110 aa2.42□□□□□ -2.02
SYNE2-216ENST00000555002 CSMD2Q7Z408 3487 aa2.42□□□□□ -2.02
SYNE2-216ENST00000555002 FLGP20930 4061 aaPredicted RBP2.4□□□□□ -2.02
SYNE2-216ENST00000555002 DNAH11Q96DT5 4516 aa2.39□□□□□ -2.03
SYNE2-216ENST00000555002 LRP1Q07954 4544 aaKnown RBP2.38□□□□□ -2.03
SYNE2-216ENST00000555002 MT4P47944 62 aa2.38□□□□□ -2.03
SYNE2-216ENST00000555002 LCE2DQ5TA82 110 aaPredicted RBP2.37□□□□□ -2.03
SYNE2-216ENST00000555002 SPRR5A0A1B0GTR4 108 aa2.37□□□□□ -2.03
SYNE2-216ENST00000555002 VPS13DQ5THJ4 4388 aa2.37□□□□□ -2.03
SYNE2-216ENST00000555002 LCE3EQ5T5B0 92 aa2.37□□□□□ -2.03
SYNE2-216ENST00000555002 DNAH17Q9UFH2 4485 aa2.37□□□□□ -2.03
SYNE2-216ENST00000555002 LCE3DQ9BYE3 92 aa2.36□□□□□ -2.03
SYNE2-216ENST00000555002 PKHD1P08F94 4074 aa2.34□□□□□ -2.03
SYNE2-216ENST00000555002 FAT2Q9NYQ8 4349 aa2.32□□□□□ -2.04
SYNE2-216ENST00000555002 KRTAP19-1Q8IUB9 90 aa2.31□□□□□ -2.04
SYNE2-216ENST00000555002 MT1XP80297 61 aa2.31□□□□□ -2.04
SYNE2-216ENST00000555002 LCE1BQ5T7P3 118 aa2.31□□□□□ -2.04
SYNE2-216ENST00000555002 RYR1P21817 5038 aa2.3□□□□□ -2.04
SYNE2-216ENST00000555002 PKHD1L1Q86WI1 4243 aa2.29□□□□□ -2.04
SYNE2-216ENST00000555002 LCE1DQ5T752 114 aa2.28□□□□□ -2.04
SYNE2-216ENST00000555002 KRTAP4-8A0A0G2JLE6 195 aa2.27□□□□□ -2.05
SYNE2-216ENST00000555002 KRTAP4-8Q9BYQ9 185 aa2.27□□□□□ -2.05
SYNE2-216ENST00000555002 KRTAP19-8Q3LI54 63 aa2.25□□□□□ -2.05
SYNE2-216ENST00000555002 DYNC2H1Q8NCM8 4307 aaKnown RBP2.23□□□□□ -2.05
SYNE2-216ENST00000555002 DNHD1Q96M86 4753 aa2.22□□□□□ -2.05
SYNE2-216ENST00000555002 PRM1P04553 51 aa2.22□□□□□ -2.05
SYNE2-216ENST00000555002 PLECQ15149 4684 aaKnown RBP2.22□□□□□ -2.05
SYNE2-216ENST00000555002 DYNC1H1Q14204 4646 aaKnown RBP2.21□□□□□ -2.06
SYNE2-216ENST00000555002 DNAH9Q9NYC9 4486 aa2.2□□□□□ -2.06
SYNE2-216ENST00000555002 KRTAP19-3Q7Z4W3 81 aa2.2□□□□□ -2.06
SYNE2-216ENST00000555002 STARD9Q9P2P6 4700 aa2.19□□□□□ -2.06
SYNE2-216ENST00000555002 KRTAP4-7Q9BYR0 210 aa2.18□□□□□ -2.06
SYNE2-216ENST00000555002 MT1BP07438 61 aa2.18□□□□□ -2.06
SYNE2-216ENST00000555002 DNAH5Q8TE73 4624 aa2.18□□□□□ -2.06
SYNE2-216ENST00000555002 LCE5AQ5TCM9 118 aa2.16□□□□□ -2.06
SYNE2-216ENST00000555002 MT1LQ93083 61 aa2.15□□□□□ -2.07
SYNE2-216ENST00000555002 PKD1P98161 4303 aa2.15□□□□□ -2.07
SYNE2-216ENST00000555002 DNAH8Q96JB1 4490 aa2.14□□□□□ -2.07
SYNE2-216ENST00000555002 LOC100996750A0A140TA64 210 aa2.14□□□□□ -2.07
SYNE2-216ENST00000555002 KRTAP9-3Q9BYQ3 159 aa2.13□□□□□ -2.07
SYNE2-216ENST00000555002 SACSQ9NZJ4 4579 aa2.12□□□□□ -2.07
SYNE2-216ENST00000555002 PCLOQ9Y6V0 5065 aa2.12□□□□□ -2.07
SYNE2-216ENST00000555002 FAT1Q14517 4588 aa2.12□□□□□ -2.07
SYNE2-216ENST00000555002 RYR2Q92736 4967 aa2.12□□□□□ -2.07
SYNE2-216ENST00000555002 APOBP04114 4563 aaKnown RBP2.11□□□□□ -2.07
SYNE2-216ENST00000555002 LCE1CQ5T751 118 aa2.11□□□□□ -2.07
SYNE2-216ENST00000555002 LCE1EQ5T753 118 aa2.11□□□□□ -2.07
SYNE2-216ENST00000555002 LCE1FQ5T754 118 aa2.11□□□□□ -2.07
SYNE2-216ENST00000555002 LCE1AQ5T7P2 110 aa2.11□□□□□ -2.07
SYNE2-216ENST00000555002 KRTAP9-8Q9BYQ0 159 aa2.11□□□□□ -2.07
SYNE2-216ENST00000555002 HSPG2P98160 4391 aa2.1□□□□□ -2.07
SYNE2-216ENST00000555002 MT1EP04732 61 aa2.1□□□□□ -2.07
SYNE2-216ENST00000555002 RYR3Q15413 4870 aa2.1□□□□□ -2.07
SYNE2-216ENST00000555002 KRTAP17-1Q9BYP8 105 aa2.1□□□□□ -2.07
SYNE2-216ENST00000555002 MT1MQ8N339 61 aa2.1□□□□□ -2.07
SYNE2-216ENST00000555002 KIAA1109Q2LD37 5005 aa2.09□□□□□ -2.08
SYNE2-216ENST00000555002 BIRC6Q9NR09 4857 aa2.09□□□□□ -2.08
SYNE2-216ENST00000555002 FAT3Q8TDW7 4589 aa2.08□□□□□ -2.08
SYNE2-216ENST00000555002 KRTAP20-1Q3LI63 56 aa2.08□□□□□ -2.08
SYNE2-216ENST00000555002 KRTAP4-3Q9BYR4 195 aa2.08□□□□□ -2.08
SYNE2-216ENST00000555002 MYCBP2O75592 4640 aa2.07□□□□□ -2.08
SYNE2-216ENST00000555002 KRTAP9-2Q9BYQ4 174 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms